Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_26691	LG7	12623404	12626403	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/G	12623425	synonymous_variant	p.Ile993Ile
T/A	12623433	missense_variant	p.Thr991Ser
T/C	12623440	synonymous_variant	p.Glu988Glu
A/T	12623456	stop_gained	p.Leu983*
A/T	12623457	missense_variant	p.Leu983Ile
A/G	12623458	synonymous_variant	p.His982His
T/A	12623474	missense_variant	p.Glu977Val
C/G	12623485	missense_variant	p.Gln973His
G/T	12623487	missense_variant	p.Gln973Lys
T/G,A	12623491	synonymous_variant	p.Ser971Ser
T/A	12623534	missense_variant	p.Lys957Met
A/G	12623687	missense_variant	p.Leu906Pro
C/T	12623710	synonymous_variant	p.Pro898Pro
T/G	12623716	synonymous_variant	p.Gly896Gly
A/G	12624030	missense_variant	p.Phe792Leu
G/C	12624067	missense_variant	p.Ile779Met
T/C	12624078	missense_variant	p.Arg776Gly
G/C	12624082	missense_variant	p.Asp774Glu
T/A	12624105	missense_variant	p.Thr767Ser
G/C	12624110	missense_variant	p.Thr765Ser
G/C	12624117	missense_variant	p.Gln763Glu
A/C	12624123	missense_variant	p.Leu761Val
G/A	12624142	synonymous_variant	p.Ala754Ala
T/G	12624163	synonymous_variant	p.Ile747Ile
T/A	12624178	synonymous_variant	p.Ser742Ser
A/G	12624180	missense_variant	p.Ser742Pro
A/C	12624243	missense_variant	p.Leu721Val
A/G	12624244	synonymous_variant	p.Pro720Pro
A/G	12624273	missense_variant	p.Ser711Pro
A/G	12624356	missense_variant	p.Leu683Ser
A/C	12624454	synonymous_variant	p.Leu650Leu
G/A	12624682	synonymous_variant	p.Pro574Pro
C/T	12624708	missense_variant	p.Asp566Asn
A/G	12624712	synonymous_variant	p.Leu564Leu
A/T	12624720	missense_variant	p.Leu562Ile
T/G	12624735	synonymous_variant	p.Arg557Arg
C/T	12624765	missense_variant	p.Glu547Lys
A/G	12624768	synonymous_variant	p.Leu546Leu
T/C	12624770	missense_variant	p.His545Arg
G/A	12624777	synonymous_variant	p.Leu543Leu
C/T	12624792	missense_variant	p.Asp538Asn
A/G	12624811	synonymous_variant	p.Ser531Ser
T/C	12624831	missense_variant	p.Asn525Asp
A/G	12624835	synonymous_variant	p.His523His
A/G	12624844	synonymous_variant	p.Asn520Asn
A/G	12624850	synonymous_variant	p.Ser518Ser
G/A	12624851	missense_variant	p.Ser518Phe
C/A	12624865	synonymous_variant	p.Ser513Ser
A/G	12624871	synonymous_variant	p.Asn511Asn
T/G	12624876	missense_variant	p.Lys510Gln
T/C	12624900	missense_variant	p.Ile502Val
T/A	12624908	missense_variant	p.Asn499Ile
C/A	12625072	synonymous_variant	p.Val444Val
A/T	12625104	missense_variant	p.Leu434Ile
T/G	12625109	missense_variant	p.Asp432Ala
A/G	12625688	missense_variant	p.Leu239Pro
A/G	12625713	missense_variant	p.Tyr231His
C/T	12625754	missense_variant	p.Gly217Glu
G/C	12625777	synonymous_variant	p.Leu209Leu
G/A	12625861	synonymous_variant	p.Tyr181Tyr
C/T	12625875	missense_variant	p.Ala177Thr
T/A	12625910	missense_variant	p.His165Leu
A/G	12625933	synonymous_variant	p.Asn157Asn
G/T	12625937	missense_variant	p.Ser156Tyr
C/G	12625959	missense_variant	p.Asp149His
A/G	12625966	synonymous_variant	p.Ser146Ser
C/T	12626024	missense_variant	p.Ser127Asn
C/T	12626044	synonymous_variant	p.Leu120Leu
C/A	12626052	missense_variant	p.Val118Leu
T/G	12626066	missense_variant	p.Lys113Thr
A/T	12626072	missense_variant	p.Leu111Gln
C/G	12626257	missense_variant	p.Arg49Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_26691.1

MLGFPFGIVFLLTAAFAVLCSCGHAPLGCNEEERQALLRIKGSFKDPSRLSSWEGTSCCQWKGVGCNNLTGHVVKLDLRNPCYPLQGDFQPNCKFYDHVLEAQHVHPSILLLKYLTYVDLSGNKFLSSSIPAFIQKLQHLQALYLSDSDFSGRIPSNLGNLTNLHVLDLSFNALLYADDFYWISQLSSLQYLYMSDVILDKAQNLLQSLNMLPSLIGIDLRNCGLDKLHTYQHISTTNLSRLQDLNLAENGLKTSFLDAFQNMTSIAVIDLSHNNLNSTPFWLETCANLDSLFLDSNALYGSLPSALQNLTSLVYLDLSQNKFDSVPGWLGELKGLQYLSLSGNDINHIEGSLASLLGNCCHLQQLNMSRNKIQSDALGNHIEFECIRHHLILLDLSHNECNGHLPAWLEQLENLRSLIMTDSNLEGSLPCDILTKLVNLENLVLSNNNFTGSLPDCIGELVSLKILILSSNHFDGIIPRSLVQLVSLTDLDLSRNSLNGTIPHNIGQLKNLSTLYLSENKLHGNIPFSLSQLLNLQDLDISLNHLENLVSDIRWPRQLVYLNLTDNRISGSLPQNISDSLPNVGYMLLGNNLISGPIPNSLCRIGSLYNLDLSGNMLIGEIPNCWSVTQKLGVINLASNRLSGVIPSSLGNLPTLAWLHLNNNSLHGGFPSSWRNLSQLLILNVGDNDLSGIIPSWMGNIFSSMQILRLSQNRLNGTIPLQLCQLSALQILDLSNNNLMGSIPHCIGNLTGMASKKNISLNQPTRTVEWYEQDVRVVIKGRELEYTRNLKFVVNLDLSNNNLVGSIPEGITSLRALLGLNLSHNRLSGHIPKRIGDMKSLESLDLSHDQLSGAISESITSLTWLSYLNLSYNNLSGQIPQGPQLSTLGDPSIYGGNPFLCGPPLLNKCFDDDFQGGDEDEEKDHKEDKLEKLWFYCVIALGYFMGFWAVTGSLLLKRSWRLAYFQYIDESTQRINESLTIHLATFKERLTGIVNRGAE*

CDS Sequence:
>Vu_26691.1

ATGTTGGGGTTTCCTTTTGGTATTGTTTTCCTTTTGACTGCAGCATTTGCGGTGTTATGTTCATGTGGACATGCACCACTTGGTTGCAATGAAGAAGAAAGGCAAGCTCTTCTAAGGATCAAAGGAAGCTTCAAAGATCCTTCAAGGCTTTCATCTTGGGAAGGAACTAGTTGTTGCCAATGGAAAGGCGTAGGTTGCAATAATCTTACAGGCCATGTTGTCAAGCTAGATCTCAGAAATCCTTGTTATCCCTTACAAGGAGATTTTCAACCAAACTGTAAGTTTTACGATCATGTCCTCGAAGCTCAACATGTTCACCCTTCTATATTGCTGCTTAAATATCTAACTTATGTAGATTTGAGTGGAAACAAATTTCTTAGTAGTTCAATACCAGCGTTCATTCAAAAGCTGCAGCATCTGCAAGCCCTTTATCTCTCTGATAGTGATTTTAGTGGTAGGATCCCGTCCAATCTTGGGAACCTCACAAATTTGCACGTTCTTGATTTGAGCTTCAATGCTCTTTTGTATGCGGATGACTTCTACTGGATTTCTCAACTTTCATCTCTCCAATACCTATACATGAGTGATGTGATTCTTGATAAAGCACAAAATTTGTTGCAGTCACTCAACATGCTTCCTTCTTTGATAGGAATAGATTTGAGAAATTGTGGACTTGATAAATTGCACACCTATCAACATATTAGCACCACAAACCTTTCCAGACTGCAAGACCTCAATCTAGCAGAAAATGGACTTAAGACTTCGTTTCTGGATGCTTTTCAAAATATGACTTCCATTGCAGTCATTGACCTTTCTCACAACAACCTGAATTCCACTCCCTTCTGGTTGGAAACCTGTGCTAACCTCGACAGTCTATTTCTTGATAGTAATGCTCTTTATGGCTCACTTCCATCTGCTTTGCAGAATCTGACTTCCCTGGTTTATCTCGACCTTTCACAAAACAAGTTTGATTCTGTTCCCGGGTGGTTAGGTGAGTTAAAGGGTCTTCAATATCTCAGTCTTTCAGGTAATGATATAAATCATATTGAGGGATCTCTGGCATCTCTTCTGGGAAACTGTTGCCATCTTCAACAATTAAATATGTCAAGAAACAAAATTCAAAGTGATGCACTTGGAAACCATATAGAGTTTGAATGCATTAGGCACCATTTAATACTTTTGGATTTAAGTCACAACGAATGTAATGGTCATTTGCCAGCATGGTTGGAACAGCTTGAAAATCTAAGATCGTTGATTATGACTGACAGTAATTTGGAGGGATCACTTCCTTGTGATATATTAACAAAACTTGTCAATCTGGAGAATTTGGTGCTTTCCAACAATAACTTCACCGGTTCTCTTCCTGACTGTATCGGGGAACTTGTCAGTTTAAAGATTTTAATTCTTTCTTCCAATCATTTTGATGGGATCATTCCAAGGAGTTTAGTGCAACTTGTAAGCCTAACAGATTTAGATCTTTCCCGAAACTCTTTAAATGGTACCATTCCTCACAATATTGGTCAACTTAAAAATTTGTCGACCCTCTATCTTTCTGAAAATAAGTTACATGGAAACATTCCTTTCAGTCTTAGTCAGCTTCTAAACCTTCAGGACTTAGACATATCCCTAAATCATTTGGAGAATTTGGTGTCTGACATAAGATGGCCCAGGCAACTTGTCTACTTAAATCTTACCGATAATCGTATCAGCGGGTCACTTCCCCAAAATATTTCTGATAGCTTGCCCAATGTCGGTTACATGCTTCTTGGAAACAACCTTATAAGTGGTCCCATTCCAAACTCATTGTGCAGAATAGGCTCCTTGTACAATCTTGACCTTTCAGGAAACATGTTAATTGGTGAAATTCCTAATTGTTGGAGTGTTACTCAAAAACTCGGTGTCATAAATTTGGCATCCAACAGATTATCCGGTGTCATTCCTAGCTCTCTTGGTAATCTACCCACGTTGGCATGGTTACATTTGAACAATAACAGCCTTCATGGGGGCTTTCCGTCATCTTGGAGAAATTTAAGTCAACTTTTAATTTTGAATGTTGGAGATAATGATTTGTCTGGGATTATCCCTTCATGGATGGGGAATATCTTTTCCTCGATGCAGATTCTAAGGCTATCGCAAAACAGGTTGAATGGAACAATTCCTTTACAATTATGCCAACTTTCTGCACTGCAAATTTTGGATCTTTCAAACAACAACTTGATGGGTTCAATCCCTCATTGCATAGGAAATCTCACAGGTATGGCCTCAAAAAAGAATATTTCTTTAAATCAACCTACTAGAACTGTTGAATGGTATGAACAAGACGTTAGAGTGGTCATCAAAGGAAGAGAACTTGAGTATACCAGAAATCTAAAATTTGTGGTAAACTTGGACTTGTCAAATAACAATTTGGTTGGATCTATTCCAGAAGGAATAACATCACTTCGTGCATTGCTTGGCCTAAATCTATCACACAATCGTTTGTCAGGACATATCCCCAAAAGAATTGGAGACATGAAATCACTAGAATCTCTTGACCTCTCTCATGACCAACTTTCTGGTGCAATTTCAGAAAGCATAACTAGTTTAACTTGGTTAAGTTACTTAAACTTGTCCTACAACAACCTTTCAGGACAAATCCCCCAAGGACCTCAATTATCAACCCTTGGTGATCCTTCTATTTATGGTGGAAACCCGTTTCTGTGTGGACCTCCACTTCTGAATAAGTGTTTTGATGATGATTTCCAAGGAGGTGATGAAGATGAAGAAAAAGATCACAAAGAGGATAAACTAGAGAAATTGTGGTTTTACTGTGTCATTGCACTTGGCTATTTTATGGGATTTTGGGCTGTGACGGGAAGCTTGTTATTGAAGAGAAGTTGGAGACTTGCTTACTTTCAATATATTGATGAGTCAACACAGAGGATAAATGAATCATTGACAATACATTTAGCAACTTTTAAGGAAAGATTGACAGGAATAGTGAATCGTGGTGCTGAGTGA

Promoter Sequence:
>Vu_26691::LG7:12626403-12628403(-)

CAAGAAAATATACTTTTTGCCTTATATATCCGGGTAAGTGAACTTTGTTAACATAATAATGTTCCATATGTGATTTTAATATTTAATAGTTACGTTATTATGAATTTCAGGCGCCATTGGCAACTTCTTGTTATGTCTGTGCAAGACAACTATGCTTTGTGGTTCTGCTCATTGCACAGGCCTCCTCCCACACAACTCAGACAAGCAATTGATTGGTAAGAACCTCAATGTTTGGACTTTCTTTGTTATATAACTGAATGCTAAAACATTTTTTTATATACAGTTCTATTCCAGCAAGTATGATGATGGACGGGAGATCAATTGCTAAGAGTAGAAAGATTGCTTGGATTTCTCTCAAGGTTTGACATATGCTAAAGTCTGACTTTGTTATAATTGTTTTATAACAAATGTTATTCACTAACTATTATCAACTGTGATGATATATTGTAGTGTAACAGACAAAATGGGTCATATGAGTGTGGATACTATGTAATGTATTGGATGACCCATATTGTTCGTTCTCACATCACAAGAAGCTGGGAAACGGTAATATTTAACTTTAACAAATTTTGATTTTTTAACAAATGTTGAATTCATATACACTAATTAAAATGAATTGTCTTTTGCAGAGATTCAAGACTACTACACCAGTTCCTGAGAAGTCACTACTATTCATTAGGAACGCTGCTGCGAAGTATATAGTTAGATTATACAATAGCTCTTAGATTTAGATTTAAACAATGCATTTGATTAGATAGAATTTTCTTAGACTCTCTACTTTATTTGATGTTGAAATACATTTGAACATGTGTTTGTTATGTTGAAATTGAATTTCTGTAAATGTTTTTATATGCAGGTCTGTTTTTGTGGTAATGGATATCACAAAAACAGACCTGCAATTTTAAAAAACTGCAGGGGAATATGCCGCGGTTCTAACCACAACCGCGGCATATAGTGCTTCGTTTTTTTTTACAAACGAGACATATGGCCGCGGTTTTGACACTAACCGCGGCATATTCGTCGGCCTATATGCCGCGGTTGAACCGCGGCATATAGTGCATTTTTTAATTTTTTTTTTAAATTTTTTTTAGGGTTTAGGCAGCGGTTCCCTAGACAACCGCGGCATATTCCGCAGCCTATATACCGCGATTCGAACCGCGGTATAAAGTGCCTGACTTACTACCGCGGCTGAATATGCCGCGGTTCAAGAACCGCGACGTATAGTGAAAATGAACCGCAGTAAAAGCCCTTCGCTGCACTAGTGTAGCAAATTTCCAGTATGCACTAGAAAACTGGAAAAGGCCTTTCTCTCTTATCTAATATTAAATCTAACAAACAGCATAGCTACAACCCATGCTTCGAACTTTCAGTAATAAACTGCGAAAACGAATACAAACGTGATATATTTTAAAATTAACCTTTCAATTTTATGTAATTTATCCTAGTTAAAATCCCTCTAACCCCTTCTATCACTAGATTCTATACATTACCAGCTCTACCCTTGTCAATCTCTCTTTTTGCCGTCATGTTTAACTGTTTTTTAAAAAGGTTTTTGTAATTTTTAGAACATGAATTTTGGTTTTTTCTCATTTTTTCTCTCTCTTTTTAACAGATTATTGCAAATGTTGCAAATGATTATCGAAGTACGGCATCTTAATTAGGTTGACGCATATTCATAAAGTCTACATATAAAACCTGTAAAATTACATGTAATATCCTTTATATATACATATCAGTATCTTCCGGTGCATAAGAATTATCTTAGACATTTAAATTTTATTAATAAAATTGCCGGCTTTGACCACAAAAGTCTAATAACCACAAAAATCAAACTTCAACACTTTGGCTTTGACCGCTTTACTAGTGGTGCCGAGTCATCAATATTTCAGTTTCCTGTTTTCGGAGTTTTATATGATAAACTAAGTGACGCCTATATATTGTCTACTTCGTTGATCCTCGCCAACTCTGTTCTTTGTTTTCTGACACTCTTCTCTGCAGAC

Gene Sequence:

>Vu_26691(-)