Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_26571 LG7 7998543 8000883 uncharacterized membrane protein At1g16860-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of cellulose biosynthetic process, negative regulation of cellulose biosynthetic process, negative regulation of cellulose biosynthetic process, negative regulation of cellulose biosynthetic process
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane
SNP Position Effect Amino acid change
A/G 7998585 missense_variant p.Ser229Pro
T/C 7998629 missense_variant p.Gln214Arg
G/A 7998638 missense_variant p.Pro211Leu
A/T 7998659 missense_variant p.Ile204Asn
A/G 7998715 synonymous_variant p.Phe185Phe
T/A 7998835 stop_lost p.Ter145Tyrext*?
C/T 7998855 missense_variant p.Val139Ile
G/T 7998957 downstream_gene_variant
T/C 7998996 downstream_gene_variant
G/C 7999047 downstream_gene_variant
T/G 7999133 downstream_gene_variant
T/C 7999184 downstream_gene_variant
A/C 7999336 downstream_gene_variant
C/T 7999433 downstream_gene_variant
A/T 7999478 intron_variant
A/G 7999496 intron_variant
G/A 7999517 synonymous_variant p.Ala118Ala
G/A 7999548 missense_variant p.Ser108Phe
A/C 7999549 missense_variant p.Ser108Ala
G/C 7999554 stop_gained p.Ser106*
C/T 7999585 missense_variant p.Glu96Lys
C/T 7999598 synonymous_variant p.Gln91Gln
C/T 7999620 splice_acceptor_variant&intron_variant
C/T 7999664 intron_variant
C/G 7999696 intron_variant
G/A 7999702 intron_variant
C/G 7999750 intron_variant
G/T 7999861 intron_variant
T/A 8000034 missense_variant p.Glu49Val
A/C 8000051 stop_gained p.Tyr43*
A/G 8000118 missense_variant p.Ile21Thr
T/A 8000119 missense_variant p.Ile21Phe
A/T 8000122 missense_variant p.Tyr20Asn
A/T 8000201 intron_variant
G/C 8000235 intron_variant
T/A 8000253 intron_variant
T/A 8000254 intron_variant
G/A 8000481 intron_variant
T/C 8000509 intron_variant
C/T 8000522 intron_variant
G/A 8000543 intron_variant
C/T 8000548 intron_variant
A/G 8000586 intron_variant
G/A 8000591 intron_variant
G/C 8000603 intron_variant
C/T 8000618 intron_variant
G/C 8000627 intron_variant
G/A 8000659 intron_variant
C/T 8000666 intron_variant
G/A 8000668 intron_variant
G/C 8000689 intron_variant
G/A 8000693 intron_variant
T/C 8000698 intron_variant
T/G 8000705 intron_variant
C/T 8000723 intron_variant
A/G 8000797 intron_variant
C/A 8000866 synonymous_variant p.Val6Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_26571.1
MGSVKVFGLQCPQRPVVDFYISDFQSRLRALVKTGYGARVTPYVDDSIEIDVSPDNKDMSPEFLRWLRDRNTSSDDRMMQLKEGYIKEGSTVSVMGVVQRNDNVLIIVPPPEPLTTGCQWAKCGAMQNLIYGLNLSSNRLTGEILKEIRNLKMLRTLDLSHNNLTGSIEVLGELISLVELNISYNFFRGLVPNTLMKLLNCPLSSFLGNPGLCIRCSASDCLACSERSSLKSCDENLLNGKA*


CDS Sequence:
>Vu_26571.1
ATGGGTAGCGTGAAGGTGTTCGGTCTCCAATGTCCACAGAGGCCAGTGGTGGACTTCTATATTTCTGATTTCCAATCTAGACTGAGAGCATTGGTTAAAACAGGCTATGGTGCAAGAGTGACTCCTTATGTTGACGATTCTATTGAAATTGATGTTAGCCCTGACAATAAAGACATGTCCCCAGAGTTCCTTCGGTGGTTGAGAGACAGAAATACTTCAAGTGATGATCGAATGATGCAATTAAAAGAAGGGTACATCAAAGAAGGTAGCACAGTTAGCGTAATGGGAGTTGTTCAAAGAAATGACAATGTACTTATCATTGTCCCTCCTCCTGAACCTTTGACGACCGGATGCCAGTGGGCTAAATGTGGAGCAATGCAGAACTTGATCTATGGTTTGAATCTAAGTTCAAATAGGTTGACTGGTGAAATTCTTAAAGAGATTAGGAACCTGAAAATGTTGCGAACACTGGATCTGTCTCATAACAATTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCATCTCCTTAGTGGAACTCAATATTTCATACAATTTTTTTCGTGGTCTTGTACCAAACACGCTGATGAAGTTGCTTAATTGTCCCTTGTCATCGTTCCTGGGCAATCCTGGCCTATGCATCAGATGTTCAGCGTCAGATTGCTTGGCTTGCTCGGAAAGAAGCTCTCTAAAATCATGCGATGAAAATCTACTAAACGGAAAGGCTTGA


Promoter Sequence:
>Vu_26571::LG7:8000883-8002883(-)
TGAGAGAGTTGAAGATGCTCTTTTCAGATTGGAGAAGAAGGGAAACAAGAATGGCATTGGCTTTGAAACTGAAGATTTTGATGATGAGTCAATTGATGAAAATTGAATGGAATCTTCTTCATAAGAATAGGGACTACTTTTCTATGTGTATTTTTTTTTATATTTTGTAATCATGCTATTAAGTGACCTCTGGGTTTAAGTACCGTTATCGGTTTTATTTTGAAATGAAATGAAAATTTATTTTAGTAAACGATCTGTGAATTGTGAGTGTTGATTGCTTTGTATGTGGACTAACCCTCAATCTAGTTGAGAAGAGAAGATTCTGTAGTTATGATATTGATCAAAAACTGATCACGGGTTTAAAAGTGCAAATTTCAGTACACTGCTAACTTGAATCGATTAAGGAAGAAGTAAAAAGAAAAAATTTCATGTCTCATTTTAAAGAAAAAAGAATCATAAGAGCGTCACTTTTTTCGTATTGGCGAAAGAAAAAAACGTCTAAGCCCCATCGAATACGACATTCTATTAAGCACACAATTAATGCTCCCATTTACTTCAATTCCCTTCACGTTCCTGCCCTGCATCCTTCGACGTTCTATGGGAGGGGAGAAAAGAAAAAAGATCCGAAAGTGTGCTACTTTTTTATACTGGCAGAAGAAGAAAACGTCGAATTCCAACGGAATTCAACGTTCTATTGATGTTGTCGTGTTTAAAAGAAAAAAGTAAAAAGAATTAAAAAGGTAGAAACTTTTTGCTTCCAATACTACGTCCAAGCCCCTTCAAATTCGATGTAACCTTTGCAATTTATAAGAAACAATTAATAAAAAAGGCGCGTTGTTTTAAGAGAAAACATCGAATGGTTTGGGACATTTACGTTGTTTTTAAACATAACGTCAAATTTTTTTTGTATTTGACGTGAAATTTATTTATTGAATGTAAAAACAAAACACAGTCTCACTGTTTGTTCGTGATTCCATTTCTGCTTGAAATTTCTTCTTGGTGGACTGCGATAAAGAAAGAAGGTTATTTTTAAGTTGTTTCTGTCTTTGTAATGTCATTTTGTTCTCATTTCTAAGGTTGATCGATTGTTTTTCGTTTATCTTTAGGCTGTTTTTCATACGTGGTAAGCGAACTTCATCATCTTCTCTAGTTACACCATTTGAAGTATGTTTTTTTTTTCTTAAATTACTCTTACGTATGATGTATGTGCTCGTGTTTGTGTTGTGTTTGTCGATTCTGGACGTATGATATATGTATAATGATACTATGATAGTTTTTTTTTTCCTTCAACGTATGATATTTGTGTTCGTTCATGGTCAGCGAACTTCATCATCTTCTCTAGTGACACCATTTCAAGTTTGTTTTTTTTTTCCTTCAATATCTCTTACGTATGATATATGTGTTCGTGTTTGTCAATTCTGGACGTATGATATATCTATAATGATAGATATTTGTGTTTGTGTACCTATACTATGATAGTTTATTTTTTTTCCTTCAACGTATGATAGGTATTTATTTTTGGTTCTCTACGTAAGTTAGTTTTTTTTTTCGTGGATTCTTTGCTTTTAGTGTAGTAGTATGGATCGAAGCTGGATTCATCAGCGTCGCATTAGTGAAGAGTATGAGCAAGGGATTTCTGAGTTCATACAATAATCGAACAGTTGTTATTGACCGTTCGGTCATGTCTCGTACTCAGTCATTAATCGGTTTCGGTCTAGTGGAATAACTATTCATTCATGACCATTCGTTCTAGTCATAGTTTTAGATATTGAACTAGTATTCGGTCTAGATAGAGTATCCCATACAATCTAAGTGCTCGGTATAGTATAAGCTTTCGTTCTAAGTTTTTAAGGGATTAGTTTGAGCTATGAGCGTTCGGTTTAGGGTTTACAGATTTGGGCTAAGTTTCTAGTAGTCAGTTTTCTATAGTGGTCGGCCAGTAATAGCGTTTGGTTAAATTCTTCTGTTATCTCGTATAAACCGTTCGATTTTTCTCTCAG


Gene Sequence:
>Vu_26571(-)
ATGGGTAGCGTGAAGGTGTTCGGTCTCCAATGTCCACAGGTTTTCTTTTTATTATGATTGGCAATGTAGTTGATGTATGATTTGTATGTTAAGTGGTAAAGATATATGTTTTAAAATATTGTGGAAGAGAATTCCAAGGAGGAATGTCTCGTGTATGGTTGTGAAATTGTAAAGTATGAATATGGATATGCTAACTTGATGTTCATCCTGATATTCTGTGATTACTCATTCTCAAGTAGAGAGGAGTAACTCATGTCTGAGAATGGCAGGAGGTCCTACCCCCTCAGGGTGCCGAGGTAGGTATTATGGGATTAACCTTGGGTAGTAGCTTGATTGGTGTCAGCTGTTTCACTACCACAATGGCAAGGACGTCTATAGCTACATATTCATAATAAACTACTCCTAAAAATGGCTTATACAGATTGGTTTGTTAAGTTTTTGAAGCTTATTGTTCTCTGAGTCTTCAAGCTAATTAAAGGAGATAAAGTTATTATTATTATTATTATAACTTTCCAAGTAAACAATTCAAGTAATGCCTTTATCCCCTTGCTCTTGACCGCCCAATTTTTTGGGGACTTTGGCTTCATGCCTTGAAGGCTTTATCTGCTATTCACTAAGTAAATATTCTCAAATTGTCACTAAGAATAACTTCATGTACTAGACCTGCATTTGAAATTCTTTTTGCTATCTAATTATTATATCTCAAGTATTTTAATATTTACCTTGACATTTATATAATGCAGAGGCCAGTGGTGGACTTCTATATTTCTGATTTCCAATCTAGACTGAGAGCATTGGTTAAAACAGGCTATGGTGCAAGAGTGACTCCTTATGTTGACGATTCTATTGAAATTGATGTTAGCCCTGACAATAAAGACATGTCCCCAGAGTTCCTTCGGTGGTTGAGAGACAGAAATACTTCAAGTGATGATCGAATGATGCAATTAAAAGAAGGGTAAAGTTCTTCCCTTTGCGTAAGAGTTTAAATCTCCAGGTTATGCATTTGTCTAACGGGAAGTTGTCAAGGTTAAATCCTTTTCAATAGTTGTTCAGGAGAGGCAAAAGCAGCTATTTTTCATAGCGTGTTGCTTTGTGTAACGTATCTGCGTATTGGTAATATACTAACTGTAGCCGTGTACATAATTCATAATTCATGTCATGCATAGTGGTACTAATGGTGACCATATGGGCTCTTAAGTTGGGGTGACCCTCGGTAGGTGGGTAAGATATTCTTATGAGACTTCCATTGTTCCTTTTGTGTAGGTACATCAAAGAAGGTAGCACAGTTAGCGTAATGGGAGTTGTTCAAAGAAATGACAATGTACTTATCATTGTCCCTCCTCCTGAACCTTTGACGACCGGATGCCAGTGGGCTAAATGTATATTTTCAGTTAGCCTTGAGGGTTTTATTTTGAGATGTGAAGACACATCAAAGATTGATGTCATTCCAGTGTAGTTGCGCTCTCCAGAAACCCCCATTTTGATATTCTTCTTTGAAGAAGTATTTTCTTACCACGGCTTAAAAATATGGTGGTTCGAGTTTGTATTCTTGTAAGTGTTATTGGTAAGCGTGATGGGTCTGCAACTGACATCGGTCATTTTCTTTTTCCTACTCTCAACTCCTACTTTGTTGTATAGCTAATGAAAATTCGTATTCGTTTATTATTCTGAGGCTCTTTTAATGGGTGTGGTTTTTTGAACTGAAGCAACCTTATTAAATTACTTCTGCATCTTCTGTCCGAAAAGCAAAACGTGACGAAGGATTACGAGGATAAACGTAATTATAACAATAAAATCCACGAATCTGGAACCTTTCGAGAAAATATACGAAACATTCAAGAATACTAAAAGTGCAATTGAAATGGTTGAGCGAGAATTGCTTTAGTGAGGGCCTCCCATCTTTCCTGTCGGAATTCAAAATGATTTCTGAGCTACAACTTGGTGTGGCAATCTGTTTGGAGGCAAAATTCCTATATCAGGTGGAGCAATGCAGAACTTGATCTATGGTTTGAATCTAAGTTCAAATAGGTTGACTGGTGAAATTCTTAAAGAGATTAGGAACCTGAAAATGTTGCGAACACTGGATCTGTCTCATAACAATTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCATCTCCTTAGTGGAACTCAATATTTCATACAATTTTTTTCGTGGTCTTGTACCAAACACGCTGATGAAGTTGCTTAATTGTCCCTTGTCATCGTTCCTGGGCAATCCTGGCCTATGCATCAGATGTTCAGCGTCAGATTGCTTGGCTTGCTCGGAAAGAAGCTCTCTAAAATCATGCGATGAAAATCTACTAAACGGAAAGGCTTGA