Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_26422	LG7	4148401	4149912	PREDICTED: uncharacterized protein LOC108323021 isoform X1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	4148914	synonymous_variant	p.Leu333Leu
A/G	4148915	missense_variant	p.Leu333Ser
C/T	4148920	synonymous_variant	p.Glu331Glu
T/C	4148952	missense_variant	p.Thr321Ala
G/A	4149086	missense_variant	p.Ser276Phe
T/C	4149089	missense_variant	p.Lys275Arg
A/T	4149092	stop_gained	p.Leu274*
C/A	4149536	missense_variant	p.Arg126Ile
A/G	4149706	synonymous_variant	p.Asn69Asn
C/T	4149822	missense_variant	p.Glu31Lys
T/A	4149828	missense_variant	p.Met29Leu
A/T	4149829	missense_variant	p.His28Gln

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_26422.1

MEERKYVCKYCSKRFPCGKSLGGHIRTHMTEERSNADADIFIKSDGVKKKRDLWCEDVVGNPIYGLRENPKKTMRFVHSGSRRGCGSGVAGANNEKEKFCKECGKGFPSLKALCGHMASHSDKEKRTIKFEDSDKKLKLVMDSQSDTETCPPSHPRRSKRMRVKTINLSNHPFPSSSPSSYSVPLPNGSSPVSEVEQEQEEVARCLMMLSRDSSFKGRFASVAECSDNNSVVLEAKSSSPDIRIGVSNGNYNFVSNNAYDLVDNKLFRVNDIKLKSVEFGASDNSGSRYFKHGPKTKMVDSDVSNDQFKWPKVGDKSSKYTATLVKKSVMEELDYDGTDGTARKFDSRKRSNYDYSLDNNPVGGSSKKIANGFGNEVYENSTKGWKYESLEGERDYDSFDYSIEESHENSSETESYPAPSSHNSKALNGKKSTSKAKKKLKSKKSRDHECPICYKIFRSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVDE*

CDS Sequence:
>Vu_26422.1

ATGGAGGAGAGGAAGTATGTTTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGGACCCATATGACTGAGGAAAGAAGTAATGCTGATGCTGACATCTTCATCAAGTCGGATGGTGTCAAGAAGAAGAGAGATTTATGGTGCGAAGATGTTGTCGGGAACCCCATTTATGGCCTCAGAGAGAATCCCAAGAAAACAATGAGGTTTGTGCATTCCGGCTCTCGTCGTGGTTGTGGTAGTGGTGTTGCCGGTGCCAACAATGAAAAGGAGAAGTTCTGCAAAGAATGCGGGAAAGGTTTCCCATCGCTGAAAGCTCTATGTGGTCACATGGCTAGTCACTCCGATAAAGAGAAGAGAACCATCAAGTTTGAAGACAGTGACAAGAAACTGAAATTGGTTATGGACAGTCAATCTGACACCGAGACCTGTCCTCCATCTCATCCAAGGAGATCCAAGAGAATGAGGGTCAAGACCATTAACCTTTCCAATCACCCTTTTCCTTCCTCTTCTCCTTCTTCTTATTCTGTTCCGTTGCCCAATGGCTCTTCACCCGTTTCAGAGGTAGAGCAGGAGCAAGAAGAGGTTGCTAGGTGCTTGATGATGCTGTCTAGAGATTCTAGCTTCAAGGGTCGTTTTGCTTCGGTTGCCGAATGTTCTGATAACAACTCAGTTGTTCTAGAAGCAAAATCATCCTCTCCTGATATTCGGATTGGTGTCAGCAATGGTAATTATAACTTTGTCTCTAATAATGCTTATGATCTTGTTGACAACAAGTTGTTTAGAGTTAATGATATCAAGTTAAAGTCTGTTGAGTTTGGTGCTTCTGATAATTCAGGTTCTAGATATTTCAAACACGGTCCCAAAACCAAAATGGTTGACTCAGATGTCTCCAATGATCAATTTAAGTGGCCCAAAGTGGGAGATAAGTCAAGCAAATACACTGCAACTTTGGTGAAGAAGTCAGTGATGGAGGAGTTGGATTATGATGGAACAGATGGAACTGCAAGGAAGTTTGATTCCAGAAAGAGAAGCAACTATGATTATTCTCTTGATAACAATCCAGTTGGTGGTTCTAGCAAGAAGATAGCAAATGGTTTTGGCAATGAAGTATATGAGAATAGTACAAAAGGTTGGAAATACGAGTCTTTGGAGGGTGAAAGGGACTATGATTCTTTTGATTATTCCATTGAGGAGAGCCATGAAAACAGTTCAGAGACAGAATCTTATCCTGCTCCCAGCTCTCATAACAGTAAGGCCCTCAATGGGAAGAAGTCCACCAGCAAGGCCAAGAAGAAGTTGAAGTCTAAGAAAAGCAGGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGTCAAGCCTTGGGAGGACACAAAAGATCTCATTTCATTGGTGGTTCTGAAGAAAACACTTTGGTGATCAAACAAGCTGCTCCTGTTGTTCCATGCTTGATTGATCTAAATCTACCTGCTCCTGTTGACGAATAA

Promoter Sequence:
>Vu_26422::LG7:4149912-4151912(-)

GGAGGAGGGAGAACAAGTAACGTCCATCCGGTCGTCAACGTCCATCCAGTCTTCAGTACTACCAAGAATGTTTTATGGAGGAACCTCTGAACCTAACTAGAACACTACTAAAATTAACTTTAAGTTGAAAAGATTGTTTAGAATAATTCTTTTAGATAACGCGTGGAAAAGTATAAAATAAAATAGTTGAAAACATGAAAACATATTATACGAAATTGATGATATTTATTAACAAAGAACTATTTGTGAAATATATATTTTGCTAGTATACACTTGTATATCTTTTTTTAATAAGATAAGTTCTTAAAACATCTTAATATATTAAATTGTACAATATTGTACATGTTTCTTCTATTACATATTATTGGTGTTATTTCTCATTTTAAAGATAATATTTGTTAATTACTTAAGGTTCACTGTAAAGTTGAGGACAAGGATTTAGGACCAAGTATTTAAAAATAGATTGACTAAAATTCAATACTTTTAAAATGAGAAAAATGTGAACATTAATGCTTTGACAAATAAAAAGATATTTAACTTTTTAGCATAAAAATGGAGATTGTAATATTTGTAGGGAAGGAAAGTGTAATTTTTATACAATGAGAGAAGAGTATATTGCAACTCTCAAAGTAAAAAAAGTAAAGATATTAATGAATATGCGAGAAGCAAAAACGTACATAAGAAAAGTTGTAAAACAAATTTCTAAGTGGATGGTATAAATGAAAATACAATGTGGAAAGAATAGTTCTTTCTTCTTTTTTTTCCAAAATTGGCATGGACTTAATAGTGCATAAAAACATAAAGGTTGCACCTTTGTCAAAATTCAATCATCAATACGATTTTTATGGTATGCATATTAATTTTAACAAATGTATCATTGATAATTTGTAATTGTGTGATAGTTTCAAAATATTGTCATTTTTTTTAATTTAACTAATTTATATTGTTAGTGTATAACTTTTTGTGTCAATAAATTAACATGGTAATATAGTACATGTTTGTTCTATGATAAATTGGTTGAAGATATATGCAGACTTTGAATTTGAATTTGAATCCAAAGATAGAAAAAGAAAAAGCAATAGAGAGTGAGATGAAGAAATAATTTATTGGACAGCTAGAGAAGTTCAACAACAAATCTCCACTTGATCTGAAAAGATGAAAGGTAAGTAAATGCAATTTGAAGAAGTTATGAGGAAAACTAGGTATGAAAGGCTTTGCATCGGAATAAAGACACGTTAAATGCAATTAAATATGATTTTGAATGGAGGGGACAAATTCAGCTGTATGAGCTTAGAAGCAAGACAATCTAAGACATAGTTTGGATGTTTCAGTTTTAGTGTGTCATATGTGGCACCAAAGCCTAGAGATCCTCAAAACAATCCACAAATCTTGATCGTTCAATGAACTCCCAATGGTTCTCAGACAGTTACACGTGCAGCCTATAGTTCCTTTTCTCATTTAATTTGATTTATTTTCTTTCGCATGCATGGAATTCTCCTCCAACTACTACACCCAACACAAGATAAACCATAAAACCAAAGAGCAAAATCACAGTGTAGATTGATTAGCTCTCATATTACAATGAATAACTATGGTGGAAGCCACTGCTAGTGACAACTACCATCGAATTTGATCCCTTTTTATTTTTATTTGTGACTACATATACCCTTTAAATTTTGAGCATTCTATAGGGAAACGGAAATTAAGGGGTCTCTCCCCTTTTTGTGGGTTGGATCTTGTACTTATGGAACTGTCACATCTGACCATTTTGATTCTCTTCTGATAATCATCATCACCACCTGGTTAAAAAGCAAGCAACTTGGTGATCTGAATTTTGTCCCTTTCTCTTCTCTGTTCTTTCCTTCTTTCACCGTTTTAGGTGGGGCTGGAAACGTGATGATCATGGATTGAATGCTATGTTGTCCTTGCAGATTTGAGGTTTGCGACATAGTTTGTTGGGTATATCTGGTTTCTGCGTCAGATTCACGTCACGTCAGTCC

Gene Sequence:

>Vu_26422(-)