Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_26408 LG7 3888969 3891439 PREDICTED: probable WRKY transcription factor 4
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 3888988 3_prime_UTR_variant
T/A,* 3889007 3_prime_UTR_variant
T/G 3889010 3_prime_UTR_variant
A/G 3889397 intron_variant
T/C 3889428 intron_variant
G/T 3889561 synonymous_variant p.Pro338Pro
C/T 3889570 synonymous_variant p.Lys335Lys
C/A 3889578 missense_variant p.Val333Phe
T/C 3889589 missense_variant p.Tyr329Cys
C/T 3889598 stop_gained p.Trp326*
A/G 3889599 missense_variant p.Trp326Arg
C/T 3889600 synonymous_variant p.Arg325Arg
G/T 3889620 missense_variant p.Leu319Ile
A/C 3889643 missense_variant p.Val311Gly
T/C 3889658 missense_variant p.Glu306Gly
C/A 3889663 synonymous_variant p.Val304Val
C/T,G 3889700 missense_variant p.Gly292Ala
C/G,A 3889716 splice_region_variant&intron_variant
T/C 3889720 intron_variant
G/A 3889722 intron_variant
C/A 3889725 intron_variant
T/A 3889737 intron_variant
T/C 3889749 intron_variant
C/T 3889753 intron_variant
C/T 3889785 intron_variant
T/A 3889786 intron_variant
C/T 3889875 missense_variant p.Gly262Glu
T/A 3890022 missense_variant p.Glu213Val
T/G 3890150 synonymous_variant p.Pro170Pro
C/T 3890486 5_prime_UTR_variant
A/T 3891170 5_prime_UTR_premature_start_codon_gain_variant
C/T 3891218 5_prime_UTR_variant
T/C 3891221 5_prime_UTR_premature_start_codon_gain_variant
T/C 3891439 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_26408.1
MVGGGNGEGAPPSTAARPRSDLRPRATTESVFNGGDTAGYSPGPMTLLSSLFGDGDEYKSFSEFLAGAMMDPTPPWFFYDSPSQGHFGMTQQQMLAQVTSHSNVQIQAEDPFSAAVPATSLTQVSTTISTTAQHLITQPASVAASGVTESFGVSHSDKKMHSSAVIVDKPNDDGYNWRKYGQKHVKGSDFSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQRKTTKGTLTSTENSDKLKEERSSHSVSQMDLESGTSDSEEVGDHETEMDEKNDEPDPKRRNTEGRLQDPASLHRTVAEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTLANNSSTQLKAQNAMPDENMHGFRGSEQRPVASLRLKEEKIT*

>Vu_26408.2
MTQQQMLAQVTSHSNVQIQAEDPFSAAVPATSLTQVSTTISTTAQHLITQPASVAASGVTESFGVSHSDKKMHSSAVIVDKPNDDGYNWRKYGQKHVKGSDFSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQRKTTKGTLTSTENSDKLKEERSSHSVSQMDLESGTSDSEEVGDHETEMDEKNDEPDPKRRNTEGRLQDPASLHRTVAEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTLANNSSTQLKAQNAMPDENMHGFRGSEQRPVASLRLKEEKIT*


CDS Sequence:
>Vu_26408.1
ATGGTTGGCGGTGGAAATGGAGAGGGAGCTCCACCCTCGACGGCGGCGCGTCCCAGAAGTGATCTCCGCCCACGCGCTACCACAGAGAGCGTTTTCAACGGCGGGGACACTGCGGGGTATAGCCCCGGTCCCATGACTCTGCTTTCTAGCCTGTTCGGTGACGGCGATGAGTATAAGTCGTTCTCGGAGTTCCTCGCCGGCGCTATGATGGACCCCACCCCTCCTTGGTTCTTTTACGATTCACCTTCTCAAGGACACTTTGGAATGACACAGCAGCAAATGCTAGCACAGGTCACATCCCACTCCAATGTGCAAATTCAAGCTGAAGATCCATTCTCTGCAGCAGTTCCTGCTACCTCATTGACACAGGTTTCTACAACTATTTCCACCACTGCACAGCACCTGATAACACAACCTGCATCAGTGGCAGCTTCTGGGGTGACAGAATCCTTTGGTGTTTCTCACTCTGATAAAAAAATGCACTCTTCTGCTGTCATTGTTGACAAGCCAAATGATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACATGTAAAAGGTAGTGACTTCTCTCGAAGTTATTACAAATGCACACATCCAAATTGTCCTGTTAAGAAAAAGCTTGAGCGATCTCTTGAGGGTCATGTAACTGCAATTATCTACAAAGGAGAGCACAACCATCAACGTAAGACGACAAAAGGCACCCTAACATCAACTGAGAATTCAGATAAGTTGAAAGAAGAGAGGAGTTCTCACTCGGTGTCTCAGATGGATCTAGAATCTGGAACGAGTGACAGTGAGGAAGTAGGTGATCATGAAACTGAAATGGATGAGAAAAATGATGAACCTGATCCAAAGAGGAGAAACACAGAAGGCAGACTCCAGGATCCAGCCTCTTTGCATAGAACTGTGGCAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGGATCTCTTGGATGATGGATATAGGTGGCGCAAATATGGGCAGAAAGTTGTCAAGGGCAACCCCTATCCAAGGAGCTATTACAAGTGCACCACCCCAGGTTGCAATGTTCGGAAGCATGTTGAGAGGGCTTCGACGGATCCTAAAGCTGTAATAACAACATATGAAGGAAAACATAATCATGATGTACCAGCAGCTAAGACTAATAGTCACACACTTGCCAATAATAGTTCAACACAGCTGAAAGCACAAAATGCCATGCCTGATGAGAATATGCATGGTTTCAGGGGCAGTGAACAGCGACCTGTGGCAAGTCTAAGACTAAAGGAAGAGAAGATAACTTAG

>Vu_26408.2
ATGACACAGCAGCAAATGCTAGCACAGGTCACATCCCACTCCAATGTGCAAATTCAAGCTGAAGATCCATTCTCTGCAGCAGTTCCTGCTACCTCATTGACACAGGTTTCTACAACTATTTCCACCACTGCACAGCACCTGATAACACAACCTGCATCAGTGGCAGCTTCTGGGGTGACAGAATCCTTTGGTGTTTCTCACTCTGATAAAAAAATGCACTCTTCTGCTGTCATTGTTGACAAGCCAAATGATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACATGTAAAAGGTAGTGACTTCTCTCGAAGTTATTACAAATGCACACATCCAAATTGTCCTGTTAAGAAAAAGCTTGAGCGATCTCTTGAGGGTCATGTAACTGCAATTATCTACAAAGGAGAGCACAACCATCAACGTAAGACGACAAAAGGCACCCTAACATCAACTGAGAATTCAGATAAGTTGAAAGAAGAGAGGAGTTCTCACTCGGTGTCTCAGATGGATCTAGAATCTGGAACGAGTGACAGTGAGGAAGTAGGTGATCATGAAACTGAAATGGATGAGAAAAATGATGAACCTGATCCAAAGAGGAGAAACACAGAAGGCAGACTCCAGGATCCAGCCTCTTTGCATAGAACTGTGGCAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGGATCTCTTGGATGATGGATATAGGTGGCGCAAATATGGGCAGAAAGTTGTCAAGGGCAACCCCTATCCAAGGAGCTATTACAAGTGCACCACCCCAGGTTGCAATGTTCGGAAGCATGTTGAGAGGGCTTCGACGGATCCTAAAGCTGTAATAACAACATATGAAGGAAAACATAATCATGATGTACCAGCAGCTAAGACTAATAGTCACACACTTGCCAATAATAGTTCAACACAGCTGAAAGCACAAAATGCCATGCCTGATGAGAATATGCATGGTTTCAGGGGCAGTGAACAGCGACCTGTGGCAAGTCTAAGACTAAAGGAAGAGAAGATAACTTAG


Promoter Sequence:
>Vu_26408::LG7:3891439-3893439(-)
CAAAGACTCATTAAATGACTAAAAAGACGCATATAAGTAGAAAAATACTCATATTCAACAAATACATAAAAAAATCAAGCAAAAGGGTTAAAAGTCAACTAACGCAAATTTAGAAACTGATCAGTCCAAATTGGAAAGCTCGCCACATTGATCAATCTTAGACTCTTAGTTTTTTAATCAGACAAGAAACTCTCAGAAGTCAAAAAAACCCTAAAAATGATTTTTAAATAAATAATATTTTTAAAATAATAAAATTCATTCATAACAAAATTATTTATAATAAAATATTTTAATATTAAAATTATCAAGTTTCACTATTTTTAAATTACTATTTTAAAATATATTTTGTAAGTCTATAAAAACATCACAAATATTATATATATATATATAAATCTAACATGTATTAATGTTTTCAAAGAAATTACATTAGCAAATTATACCGCATATATTTTAATAAAAAATATAATAGTAGTTTAGTTACTTGCTTTATTTCTAAATAAAGTAGACGTAATACATCAATTAATTTCATGAAGATTTATTAGGAAACAAAGTATTTAACTTTCCTAAAAGTATAAGAAAATTGAATACAATGCAAAAAGTGAACCTGACGTGAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTGCGCCACAGATCCTCATTTGTTTGTTAAGCATAATTAATTTAATTGAATAAAGAATATTTCTGCGAAGCATTTTTTTAGTTTTATATATGATTTAATCCTTCTATCTACTTTTTTACCTGATAATTTGAAAGTAAAAACATTTATTATGTGAGATAATTTATAATCGAAACAAAGATCTTGAGTATTCTTCAACCCAAAAGATTATTTTTTAAATTACAAAAACTAAAAAGATCTTTTTTTTAAGTTTATAGAAATAGAAAAATAATTCTGAATTTGAAAATAAAAAAGTAATAAAAAAAATCAAAACTACCTATCACAATTCACACCAAAAGAAAATAGAATACGAGAGATCGTGAGAACTTTCCAAGTTGCATATATAAAGTATTGAAATAAGGCTTTCCCTCTTAAGCAACATATAAAAAAAATAGTCACTAATAATTTTTTTTTTCATAATTTAATATTAAATTTCAAATCCATACTTAGAGTAGAAAATAAAACTACCATGAGTAAAACCTGTTATAGAACGTTTATTTAGTCTTTACAGTTCTTTAAAATGATGTCTACATATGTCTAGTATATTAGACGCCGAGAAAATTGATGCGAAAATTATCTTATTACAATAAAAAAATTCCATTTATTGCTTCTACTAAATAATCCCATGTAAAAGAAATGGAATTTTTTTTAAAAATGAAAATAAATGACATTGTTATTGTTTAACTCTTTGTTACGTAATATTTTAAATAAAATAAAAACCAAGTAATTTATTTTTTAATTTAAAAAAAATCCGTGAACTTATCTTTATCATCCTCCTGTGGAGGCAAAACTTCTGAGTATTATGACAAAGGTTGTTGTCAGTTTTTGTGACTTGACTGAGTTTGGTCCTTATTTTATCTTCACAAAGACAAACAGAACGCAACAAAATTACTCCTTTCTCGCCACTGCCCCTCACGTTACCACTCACCATTGGTTCACCTTCACTAAATCCATGTAATTTCTAAACTCTTTTGAGGTCAAAATCGACAATGCTGAAATCCCTTCACCATTCGTCACGCATTGTTCCCATTTTTCTCGTAAATCATAATCAGAATGAAACACAAACAGCCGTCACTTGGAATTTTACTTTACATTCAAAACTAACTTCAAAATGCATAAATACACACTCATTTTTAACAGAAATCAAGCTTAGGTAAAATCAATTTAATGACATTTTTTTAACAGTGGACAATCTAACATGAACCTTGAACGAAATTGAAGGAAGTTATGTTTCACTGTTACTTAAATTACGGAATAATGTTCCTCGTGCTCAGGTTTATAGATCAGAAAGAAAATGATGATACCATT


Gene Sequence:
>Vu_26408(-)
ACGCAATTAAAAGAAATCAAATATATATAACTTTGTTGGTACGTGAGAGAAGAGAGAAGAGAAGATGACTGGGTTTTTTTCCTGCAGTGTCAGTGGCGTGGACTTTTTTTGCCGAAATTGAGAATTGAGTTTGAGATCCACGAAACCAAAAAAAGTCAAATCATCCGACCAGAACACCAGAATCATCGTATAACATGCACAGAGCATAAAGGTTGGATATTGATTAGGTTTGGTTGAAGATAGAAAAAAAAGAAAGACTTTTTAAAGTCTTGGTTCACTCAAGGTGAATGGTTGGCGGTGGAAATGGAGAGGGAGCTCCACCCTCGACGGCGGCGCGTCCCAGAAGTGATCTCCGCCCACGCGCTACCACAGAGAGCGTTTTCAACGGCGGGGACACTGCGGGGTATAGCCCCGGTCCCATGACTCTGCTTTCTAGCCTGTTCGGTGACGGCGATGAGTATAAGTCGTTCTCGGAGTTCCTCGCCGGCGCTATGATGGACCCCACCCCTCCTTGGTTCTTTTACGATTCACCTTCTCAAGTAACACATCTCATTTGCTATATTCCTTCCAACCGCATATTTATGCCTTTCCTAAATTTATGTAATCTTAGATTTTTATATAATTGATCTTCATTTTTAAATTAAGAAACATGATTAAATAAAATGTGTGGTTAAGTAGATTTTAGTTAGGATAAATGTTTCATGATAAACATATAGCCTTGAATTTTGGTTACTGCATATAGGTTTTCTTAAGTATGACTTTAAGAAAGTTGTCTTTAAAGTTCATTGAATTGATTAGGCGACATGGGGTAAGATTCCTTTTGGGGAAATCTTTATATGATGGAGATTACCACTATAAGGCAGAAGTTTCTTGTATTTCTCATTCATTTCACGTGACACCTACCAAAAGCAAGAGAAATTATTGTATGAGATTAACATGTATACACAGAAATTGTTATAAAATTATGCACCATCACTTTTTGGGATCCTAATCAATATTTTGCATAACATATTTAAAGCCTGTAATATACAGGGACACTTTGGAATGACACAGCAGCAAATGCTAGCACAGGTCACATCCCACTCCAATGTGCAAATTCAAGCTGAAGATCCATTCTCTGCAGCAGTTCCTGCTACCTCATTGACACAGGTTTCTACAACTATTTCCACCACTGCACAGCACCTGATAACACAACCTGCATCAGTGGCAGCTTCTGGGGTGACAGAATCCTTTGGTGTTTCTCACTCTGATAAAAAAATGCACTCTTCTGCTGTCATTGTTGACAAGCCAAATGATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACATGTAAAAGGTAGTGACTTCTCTCGAAGTTATTACAAATGCACACATCCAAATTGTCCTGTTAAGAAAAAGCTTGAGCGATCTCTTGAGGGTCATGTAACTGCAATTATCTACAAAGGAGAGCACAACCATCAACGTAAGACGACAAAAGGCACCCTAACATCAACTGAGAATTCAGATAAGTTGAAAGAAGAGAGGAGTTCTCACTCGGTGTCTCAGATGGATCTAGAATCTGGAACGAGTGACAGTGAGGAAGTAGGTGATCATGAAACTGAAATGGATGAGAAAAATGATGAACCTGATCCAAAGAGGAGGTAAGGGTTTAGTTCATATAAACCTGTTCATGGTGGGACAATTGTTTAGCCTTATGTGAATTTGGAAAGTTGTACTATTTGGCAGAAACACAGAAGGCAGACTCCAGGATCCAGCCTCTTTGCATAGAACTGTGGCAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGGATCTCTTGGATGATGGATATAGGTGGCGCAAATATGGGCAGAAAGTTGTCAAGGGCAACCCCTATCCAAGGTGATATTGCTTTTCCTCCACATTTTATTTGTTTCTTAACAAAATGGATTACAGTCTAGTAAGAACAGACAAATAGAGCCACTCATACATGCATTTGATTTAACATTGTACCCGACAACTTCCAACAAACATGGTTCCCATGATGCTTAGTTATTTCAAGTACTCAGTTATGCATGGTTTTATGATATATATAGGAGCTATTACAAGTGCACCACCCCAGGTTGCAATGTTCGGAAGCATGTTGAGAGGGCTTCGACGGATCCTAAAGCTGTAATAACAACATATGAAGGAAAACATAATCATGATGTACCAGCAGCTAAGACTAATAGTCACACACTTGCCAATAATAGTTCAACACAGCTGAAAGCACAAAATGCCATGCCTGATGAGAATATGCATGGTTTCAGGGGCAGTGAACAGCGACCTGTGGCAAGTCTAAGACTAAAGGAAGAGAAGATAACTTAGGTTTCTTCGTTTCTTAAGTTATATTGTATCTTTTTTCTCATAATTCCACATATATACAAAACATGTTAAACTCACACACTAGTAATATATAACACAAAAGCCATGCTGATATTCTGTAT