Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_26191	LG6	38397315	38399673	PREDICTED: zinc finger CCCH domain-containing protein 15	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, mRNA binding
Pathway	B 09143 Cell growth and death	C 04218 Cellular senescence [PATH:ko04218]

No SNPs found.

Sequence Details:

Protein Sequence:
>Vu_26191.1

MLNKDACSPSSNGGFGPAAVSGQLPSNGGYGSLYSALSNDNLPSLSANCSNGGGVSLYPYSDSTTQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRAANKELQKQLHLVIQASLESQYAAAGSGSSGQTQPTLFDVLHGFRSLHIGEGKENYADWNNNNNHNHNNILNNNNNKDLQEASDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSAALATNNNVTRNKGATRPRATATPPEAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER*

CDS Sequence:
>Vu_26191.1

Promoter Sequence:
>Vu_26191::LG6:38395315-38397315(+)

CACGTGGGAAAGAGTTTATGTATTGGCCATTGAGAAAGAAATCAACGTGAGGATTTTGAATAAGTGTTATTTTATTCAACAAACATTTTGATACCAGATTTTGATGGAGTAGCGATTAGAGGAAGAGGTTGTTGTAAATGTGATAAAGAAGCAATCCCTCTAACCAAATAGAAAGACCATGATTTCTTTTCTTTTCTTTTCTAAATGAATGTCAACCTGTCTTAATCCACTTCATGACTTGAAAATGGGAAACCAAAGCCTAGACCACCAGCCAGTACCCTCCTTCAAACTAACTTCAAATTCAAGCATTATATAATCAAATGCTGCCCTAACCGCAACTGCACCTTGAATACGCCCTCTAAACTGTCTTCGCCTCTTATATTATCTTTCTGTTAGAACCAAAGTTTATTTTTTCTATTTATGTCTATCTTCAAAACCAACAATAAATCATACAACGTGGACCCCCATCTACCAATTTTATGTCATTCACTTTTTACCACAAATAAAACCTATAACGTTTTATTTTCCCAACTTTATATGGATGTAATTTTTTATTTTCTTCTCCAAAGGGTTTTTTAAATATATGAATAATTTCTATGGTGATCATTAATATTATTTTGAATTTGTTAGCTGTTATTGTTGATAATACAAAAAATTAAAACATTTTTTATTAAAATATAAAATTTCATATTAACAGTGTATAACTTTTAATGAGAATGTTTATTACGCTATTTGACATATACAATGGTTTAGTAACCTCCGCACAATAGTTTCTGCATTAAGTAATAATTATTGATGTGAGCGCATATATGGATTTGACATTAAATGCAGATATTAGTTAATATATAGCAATAATTGAGAGTAAAATTGTAGTTTATAAAAGGAAAATATTACCTTGATACCCCTTTCTTTTCTCTTATTTCTACTTCAAAATCTCTAAAATCTCTGTTAATAATAAAAATATCATATTTAACTAATATAAAACAAAAAATTTAAATAAAATAATAATATTTATAGTTATTAATGGTAGTATAAAATATAATCGATGTCAAATTATGACCATCCTTTACAAAATATTGCTGAATTGAGATTAGATGAAATTAACCAGGTTGCAAAAATTAGTTACGGCAGCGAGAAACTGCATTTCTCCATAACTATTTTGTAAGAAAAAAAAATTAAAATTAAAATGAACCTTCTTTAGAATTTTTTTTTTATATAACTCCTCTGAATTTTAATTTTTAAATTGTTTATAATTAAAAATGAATTTACCAATAAGACTAAAAAATCACGCCATTACTATTACATAAGAGCAAAAGAGAAAGTATATCAATGGCCAATGCTTAAGCACGAAATTTAGTTTTAAGAAACACACCAATTTAAAATACCAAAAAAATCCTAAAAGGATGCAGCAGATCTAACGAATTGAGTAGGGGTAATTAGGGAAAAGAAAAAAGTTGAATAAGCTCCGAAAGAGCGTTCTGTTAGGAAGTGTGTCAGAGACGGTTTCTTTCTTTCTTTCCATGGCACCAAACACACTCGCCTCAACCATTACTACTATATAATCTCTTCTTCCACTTCTCTCTCTCTCTCTCAAATCGCTTTCTCTTTCTAAAATCTCCTCAGTCCTCGACAGAAGCTCAAGCAAACAGCGAGGTCAGTGATTTTCAAGAAATTCTCTGTTTATTCAATGAACAGTATCTTCTTTAATTCAATTTTAATTCCTCTATGTATTAACTTCATTATACATTAAGTAATTTGCATGGTCGACTTATCGATCATTTCATCGACATTTCTTGAATACAACTTAGTTCGACGTTTTCTTCGATCGCGCACTGTGATTCTTTAACAAATCGGTTATCAAATTATTATTATCTGAGTATAAATATGAATTAAGTGATGGCCGATGAAACATTTCAGTTAATGATCGTTCATCGCGTTGCGATTCCGCAATTCTTTTCATTTATAACTATCTTTGTCTGATTTTGCAGAATCAAGAAAAA

Gene Sequence:

>Vu_26191(+)

ATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAATGGCGGATTCGGCCCCGCTGCCGTCTCTGGTCAATTGCCGTCAAACGGAGGCTACGGTTCGCTGTACTCAGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCGAACTGCAGCAACGGAGGCGGCGTTTCGCTGTACCCATACTCGGACTCAACAACTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGTCAGCTCCGGGCAGCAAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGAGTCAGTACGCCGCCGCCGGCAGTGGATCCTCCGGCCAGACTCAACCGACGCTGTTCGACGTCTTGCATGGCTTCCGCAGCCTCCACATTGGGGAAGGCAAAGAGAATTATGCCGATTGGAATAACAACAATAATCATAATCACAACAATATTTTGAATAATAATAATAACAAGGACCTGCAGGAAGCGTCAGACGAGAGTCCAACGAGCGTGATGGAGAATAACGTGGTGGAGGTTGAGAGATTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTGCTGCTCTTGCCACCAATAATAATGTAACTCGCAATAAAGGTGCCACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTGTAAGGACACACGTGCTAACTATCTATATATGCTTGGGCTTTTTATGTTTTAGTTATTATTATTATTATTTGTCTTGATATGTGATTATTGCGTTTATCGTTATTTACCGTACTTGACGTGCTTGTTAGTTGCTAATTATTTTCCTTTCAAAAGAAGTAAAGCATTGCTTGTCTCTGTCATTACCTGGAGGTAGCTGCAACGAATGGAGTAGTTTGTGGTTGTTGTTTTCATTTGCGTGTGCTTGTTTTGCAAGTGTGCAACTCTAGTTAGCAATCGGGTTCGCAGGACCCATTAGCTCAAGTTGCTCTAAGCCATAAAGAAGTAGCCCGAGCCTTGCTGTGACAGTTGTAACCTGTTTGGTGGGTGGTGGCTGGCATAACCTGGGCTTTAGGGTCGTTAGGTGGGGCTCTAGCTTTTCGCGTTGTTTCCTTTTCTTGCGTGGGTCTCATGTCCCAGTTAAGTAAGATTAATTTTGATAAGGAGCCATACAGTTTTGGTATTGTATAGGGGTCAAATAATTGTTTTTCAACCTCTAAAAATTTTGAAATATAGAGAAATTGGCAAGACTGTTAGCCATACAACACACGTCCACTAAATATTGTTCTTTCATGTCTTGATTTGAAAAGATTTATAATAGTCAAGTTAGATATGTCATTCTGCTGCTAGCTGCTAGTGGTTTGGTATGTTCAACGTTTTGATAGCCACAAACAACAGTTTCTAATTAGTGTTAGATGACATAACCAATTTTAATTGGTAGAGTAGAGCTGATGCAAATATATTTTATTTATTATATGGAAATTTTTACTGTCAGCAAAAAACATAAAGAAGTCATTTTAGTAATTAAAGTATTCAGTGTGTGGAAAATATATATCTAGTTTGTGCACCGTGTACATAAATGAATAATTGGACATATGATATACATAACCATATCTAACAAACATTAAATAATTTTTGTATGAATCCACGTTATATCCTTTCCTCTCTTATACACTTATGCTCGTTTAGACGATGACATCTAAATTAAGAGAGAGTATAGTTCATCTTACTTAGAGGATGACACATAAGTTAAAAAGTCAGCTTAATTGGTTGAGCACAGTATGTATGAATTGTTATAAAAGCTTAAATATATTCAATGTTTATGGATGAAAAAATAACGAATCTAACATAAAAAATAGGAAGGAGTTTATTTTTTTATTATTATTGTAATTTATGCTACTTGATTGTTGTTGAAATTTTTGCATATGTTGCCATGGAATGGTACAGCAGAAGGTGTATGTGCGGGGAGGGCAGAAAGAGGAAGAGCCTCTGGAAATGGTAGTGTATAACCAAGGGATGTTCAAAACTGAGCTGTGTAATAAGTGGCAGGAAACTGGTACATGCCCATACGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACCGAGGTCTGCAGGATGGTCCTTGCGGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA