Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_26000 LG6 32075915 32077865 myb-related protein 2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to light stimulus, regulation of transcription, DNA-templated
Cellular Component   located in   mitochondrion, mitochondrion, mitochondrion, mitochondrion, mitochondrion, mitochondrion
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
A/G 32075949 missense_variant p.Leu180Pro
C/T 32075956 missense_variant p.Asp178Asn
G/A 32075974 synonymous_variant p.Leu172Leu
C/T 32075986 missense_variant p.Val168Met
A/G 32075996 synonymous_variant p.Cys164Cys
G/T 32076005 stop_gained p.Tyr161*
G/T 32076017 stop_gained p.Cys157*
C/T 32076025 missense_variant p.Ala155Thr
A/T 32076030 missense_variant p.Val153Asp
G/A 32076040 missense_variant p.Arg150Cys
C/T 32076045 missense_variant p.Arg148Gln
C/T 32076058 missense_variant p.Glu144Lys
C/A 32076060 missense_variant p.Gly143Val
G/A 32076067 missense_variant p.Arg141Cys
G/A 32076079 splice_region_variant&synonymous_variant p.Leu137Leu
A/G 32076085 splice_region_variant&intron_variant
A/T 32076090 upstream_gene_variant
C/G 32076101 upstream_gene_variant
A/G 32076103 upstream_gene_variant
A/G 32076106 upstream_gene_variant
A/G 32076110 upstream_gene_variant
C/T 32076119 upstream_gene_variant
C/A 32076122 upstream_gene_variant
T/G 32076123 upstream_gene_variant
A/G 32076134 upstream_gene_variant
T/G 32076136 upstream_gene_variant
C/T 32076145 missense_variant&splice_region_variant p.Val136Ile
T/G 32076158 missense_variant p.Glu131Asp
C/T 32076190 missense_variant p.Gly121Arg
C/A 32076204 missense_variant p.Gly116Val
C/T 32076205 missense_variant p.Gly116Ser
G/T 32076212 synonymous_variant p.Thr113Thr
C/T 32076220 splice_acceptor_variant&intron_variant
G/A 32076224 splice_region_variant&intron_variant
A/G 32076227 splice_region_variant&intron_variant
A/G 32076236 upstream_gene_variant
A/T 32076237 upstream_gene_variant
G/A 32076240 upstream_gene_variant
C/T 32076241 upstream_gene_variant
T/C,A 32076258 upstream_gene_variant
T/C 32076259 upstream_gene_variant
A/G 32076264 upstream_gene_variant
A/G 32076265 upstream_gene_variant
A/G 32076276 upstream_gene_variant
G/A 32076280 upstream_gene_variant
C/T 32076283 upstream_gene_variant
A/T 32076287 upstream_gene_variant
C/T 32076289 upstream_gene_variant
G/A 32076303 upstream_gene_variant
G/T 32076306 upstream_gene_variant
A/C 32076311 upstream_gene_variant
T/C 32076335 upstream_gene_variant
G/A 32076350 upstream_gene_variant
G/A 32076355 upstream_gene_variant
A/G 32076368 upstream_gene_variant
G/A 32076379 upstream_gene_variant
A/C 32076399 upstream_gene_variant
C/T 32076410 missense_variant&splice_region_variant p.Gly111Ser
G/T 32076412 missense_variant&splice_region_variant p.Ser110Tyr
A/G 32076424 missense_variant p.Ile106Thr
A/G 32076426 synonymous_variant p.His105His
A/G 32076438 synonymous_variant p.His101His
G/T 32076451 missense_variant p.Pro97His
A/G 32076465 synonymous_variant p.Ser92Ser
C/A 32076488 stop_gained p.Gly85*
A/T 32076492 missense_variant p.His83Gln
T/G 32076500 missense_variant p.Met81Leu
G/A 32076546 upstream_gene_variant
G/A 32076582 upstream_gene_variant
T/A 32076585 upstream_gene_variant
G/A 32076588 upstream_gene_variant
T/G 32076597 upstream_gene_variant
C/A,* 32076608 upstream_gene_variant
G/C,A 32076611 upstream_gene_variant
G/A 32076628 upstream_gene_variant
A/G 32076634 upstream_gene_variant
C/T 32076635 upstream_gene_variant
C/T 32076650 upstream_gene_variant
C/G 32076662 upstream_gene_variant
C/T 32076667 upstream_gene_variant
G/A 32076669 upstream_gene_variant
G/A 32076670 upstream_gene_variant
C/T 32076685 splice_region_variant&intron_variant
C/T 32076689 splice_donor_variant&intron_variant
C/T 32076710 missense_variant p.Arg68Gln
G/A 32076714 missense_variant p.Arg67Cys
G/A 32076715 synonymous_variant p.Arg66Arg
G/A 32076717 missense_variant p.Arg66Cys
T/C 32076722 missense_variant p.Lys64Arg
C/T 32076724 synonymous_variant p.Gly63Gly
C/T 32076740 missense_variant p.Cys58Tyr
T/C 32076744 missense_variant p.Ser57Gly
C/T 32076745 stop_gained p.Trp56*
C/T 32076755 missense_variant p.Cys53Tyr
T/C 32076764 missense_variant p.His50Arg
C/T 32076770 missense_variant p.Arg48Gln
C/T 32076773 missense_variant p.Arg47His
A/G 32076775 synonymous_variant p.Cys46Cys
T/G 32076780 synonymous_variant p.Arg45Arg
C/T 32076812 missense_variant p.Ser34Asn
C/T 32076868 upstream_gene_variant
C/T 32076871 upstream_gene_variant
C/G 32076892 upstream_gene_variant
C/T 32076897 upstream_gene_variant
T/G 32076906 upstream_gene_variant
T/G 32076920 upstream_gene_variant
A/C 32076930 upstream_gene_variant
G/A 32076953 missense_variant&splice_region_variant p.Arg30Trp
T/C 32076969 synonymous_variant p.Arg24Arg
C/T 32076976 stop_retained_variant p.Ter22Ter
T/A,* 32077007 missense_variant p.Ser12Cys
T/A 32077008 synonymous_variant p.Gly11Gly
C/T 32077012 missense_variant p.Arg10Lys
A/G 32077029 synonymous_variant p.Asp4Asp
G/A 32077043 splice_region_variant&intron_variant
G/A 32077055 upstream_gene_variant
C/T 32077056 upstream_gene_variant
G/T 32077087 upstream_gene_variant
T/G 32077100 upstream_gene_variant
C/A 32077101 upstream_gene_variant
G/C 32077113 upstream_gene_variant
G/A 32077115 upstream_gene_variant
C/T,A 32077132 upstream_gene_variant
T/C 32077167 upstream_gene_variant
C/T 32077174 upstream_gene_variant
T/C 32077176 upstream_gene_variant
T/C,A 32077178 upstream_gene_variant
T/C 32077179 upstream_gene_variant
A/C 32077188 upstream_gene_variant
G/A 32077195 upstream_gene_variant
G/C 32077196 upstream_gene_variant
C/T 32077199 upstream_gene_variant
A/G 32077200 upstream_gene_variant
T/C 32077227 upstream_gene_variant
T/C 32077265 upstream_gene_variant
A/G 32077271 upstream_gene_variant
T/C 32077285 upstream_gene_variant
G/A 32077287 upstream_gene_variant
T/C 32077300 upstream_gene_variant
C/T 32077306 upstream_gene_variant
T/C 32077317 upstream_gene_variant
C/T 32077319 upstream_gene_variant
G/A 32077330 upstream_gene_variant
G/A 32077331 upstream_gene_variant
G/A 32077348 upstream_gene_variant
A/G 32077352 upstream_gene_variant
A/C 32077385 upstream_gene_variant
T/A 32077462 upstream_gene_variant
A/G 32077557 upstream_gene_variant
T/C 32077590 upstream_gene_variant
T/A 32077620 upstream_gene_variant
A/C 32077679 upstream_gene_variant
C/A 32077763 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_26000.1
MRVLIGEETEEEVEGGGADGGAEVDLGGSSGADAVAVGEGGERHEGVVEDIALVDLGVVEEDLGRDAVEESDDFRVEYSPHMQHQGKNIHSSSRMPIPYERHVFLHIGNGSEATPKTVMKLMGISGLTLYHLKSHLQVLILSRSGENVGRTRDWVPAICSSVYGGCHGSVIWLLEKMKDDILGAMFGASSAF*


CDS Sequence:
>Vu_26000.1
ATGAGGGTCTTGATCGGTGAGGAGACGGAAGAGGAAGTTGAAGGAGGCGGAGCCGACGGAGGTGCTGAAGTCGACCTTGGAGGATCTTCCGGCGCAGACGCAGTAGCTGTCGGTGAAGGAGGTGAAAGGCATGAAGGTGTCGTCGAGGACATCGCGCTTGTCGACCTTGGAGTTGTCGAAGAGGATTTGGGAAGAGACGCCGTCGAGGAGAGCGATGACTTTAGGGTTGAATACTCTCCTCATATGCAACATCAAGGAAAGAACATTCATTCTTCTTCTAGAATGCCAATCCCTTATGAGAGACATGTGTTCCTTCATATTGGAAATGGATCTGAGGCAACACCCAAAACGGTAATGAAACTCATGGGGATTTCAGGGCTTACTTTGTATCATCTGAAGAGCCATCTTCAGGTTCTGATTTTGTCTCGCAGTGGTGAAAATGTTGGGCGAACTCGCGATTGGGTTCCTGCAATTTGCAGTTCTGTCTACGGTGGCTGTCATGGAAGCGTGATTTGGTTACTGGAGAAAATGAAGGATGACATTCTAGGAGCAATGTTTGGTGCTAGCAGTGCTTTTTGA


Promoter Sequence:
>Vu_26000::LG6:32077865-32079865(-)
AGTGCACTACCTAAGAGCTTCAAGGCTCTAAAATGTGTGGGACAGAGAATCGCTGCTTCCCTATAATACTCACAGGCACTCAAAACCATCCCTTCACCCTCAAGGGCGATGCCGAGGTTGACATAAATCTGGGGAAGCAAGTAAGCCCATTGGTTGCCACCAGCCTCAGCAGACTCAAGAGCCAAGAGGAACTCCTCCTTGGCCTCCTTGTACCTGCCAAGAACATACAAACAATTCCCAGCTCTGAAATGAGGCCTCACATCCACAGGTTGCAACTCACAAGCCCTCTTGAAACTAACCAATGACTCCTTAAACAACTGATGCTCATACAAAACTCTCCCAATTGCCATGTGCCCATCAAAAGCCTCTTCTCTTGACCTAGCACCATCAGCTCTCCCTCTCAACGCTCCCAATTCCTTCAAAAAAACTGTATAATCCTGCCCTGACTCCTCCCAAAACACTCTCTTCTCCGTAATCTCGGAAGAGGGCCCTAATTCGCGAGACCACCCGGCATCTGAATATGCGTCAAAGTTGTCATTCTTCAATTTCCCACCTTCCTTTGACTGCTTCGTCTTCAGCCTCTTCACAAGAAGCTCCAAATCATCCACAATCTTCCACGTCTCATCGAACACGATCCCGTGGTTTGGCGACACCGCCCAGGCGGCCGTCCGCTGTTTCTTCTGGGTCTCCACCGCCATTCTCTCGTCCACGATCGACGAGGATGACGCCTCAGACGCTGCAAGGGGCTCCTTCACAGCGTCTGCCACGAGGTCGAGCCCAAGCGCGTCGAAATCACGGTCGACGTCACCGGCGCCGTCGTCGTACGTGCGCAACAGACCCTCGTACGTGAGACCCTTGTCGCCGTCGATGAATTCGCCGTACGTCCGGAACACCTCGTCAAGGATCGCGCTGATTTGTTCGTCGCTGAACTTCACCCTAGGGTTCACTGCACCCACCAGCGACGCCATTTCCTCACGGTTGAGACCCCCATCACGGTTCGCGTCGAATTGATTGAAAATTCGCCGAACCTTCTCCGATCTGGTGCCCCTCGTCGCCATTTCCGGAGTCAGAATGGAAGCTTAGTGGCGGCAGGTGCGATGGGTCTGTGCCAGTGACGTTGTATCTGGGGAAATTAAAATAAAACAAAAACCTAATTTTTTTTTATAAGAGCTTGAAATTGGAACCCCCAATGAAATGTTTTGGGGTCATTAGGATTTGGGATTGGAATCAGAAGGCGTTGCTTGTGGTTGATGATAATGATGACTGGTGGTTGGTTGTGTTGTGGGGTTGGGATTACCAGTCAGAGGGACCATTTCAAAGGGGGCATGATTTTTCAATTCGGAACCCTAATTTTATGTTTCGAATCTTTTGTTGAGATTTGGGGTTCTGTTAGGGTTGGACCTGATTGTTGGTGATGATGATGATGGATGGGTTGTGTGTGGGTGGGAGCAAAAGGGATGAATGATGGGACCAATTCTAAAGGCAGTGATTTTTTTAGGTTTTGAAAATTAAAACCCTAAATTGCTTTTTGATATCATTAGGTGTTGATTTGGGATTTAGGATCCACCCATTAGCTGTGTTTATGGTTATTTTCGGTTTTGATTTGTCAATTTCAACTCAAGCTGTAAAGGGGGTGATTATTGAAGAAGAAATAGAACTCCCACACTTTATCTATATCAATCTTAATACTTTTTTCTTATTATAGTTTATATGACGTGATTATAATGGTGGGGCTTAATTAGTTATTTTGAGTTAAGTAATGATCATTATGGGTAGGTAATAAATAAATACTACATCTGTCAACCAAAATTTCCTCTAAATAATTTATTTTATGCTAATCATTGCATTATTTCAATTAATGGGTTTTATTCTATAGAATATAAAGTTATTAGCTTTTGTCTTTGTATGCAGAAAAGTTATACATTGTCCAACAACTTGAGTTTTTAGTGTACACTTTAAACTCGTTAATTTTATAATAAAAACCTATTGCGCATTTATAA


Gene Sequence:
>Vu_26000(-)
ATGAGTGCATAATTCTCACTCTTCATAAGGTCAAGTAACATTTAAAACAAGAAATGCTAGAAAGAAAAAATAATAATACTAAATAAATTATAAGTTAAATATGGTTTTACTTTTATAGTTAAACAAACTTTATTATTTAGTTTAATTTCTTAAAAATTATATTTTTTTTAAATAATGTATTAATGTTAATGAACATTGAAAAAAAGAGAAAAGAATAAATGTCACCATATTAAATTGTCATAGATAGTAATAAAAAGTTGTATTATGGAATATCAAGGAGAGCGGATGGGAATAAGTTCCCTCTCCTCTTATAGAAAGAATTTATTTTCATTTTCATACTTAAATTTAATATAATCAAATTTTGTCACATTTTTATTTTCATTTGGATAAGAGATATACACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGTTTAATGTCTCTTCAGGTTTCTATTTTTATCCAGAATCTCAAATAGGTCCTTTTTTTTCGGCATCTCAATTGAGTCCTTATGTTTTGTAAAACTAAAGCAATTAGAGGTCTTCCATCAAATTGGACAAATGACCGTTTAAGTTTGGATTATGACATGGTCAGTGTATTATTTTAAATGATGTGCCAGTTTATACATGATTAACATGTATTTTATAATTTCTAAATTAAAAAATTGAGGGCAAATTGGGAAAAAGAAATTAAAGGCACTCCCTTTCTCTGAAATTGAGGAATGCGAAATTAGGGTTCGTGAGAGAAAAAAAATAGCCATTTTGTTTGCGGAGGGGTCTTGATCGGTGAGGAGACGGAAGAGGAAGTTGAAGGAGGCGGAGCCGACGGAGGTGCTGAAGTCGACCTTGGAGGATCTTCCGGTGAGCTGGTCCTCGAGGTCATCAAAGTGTTATGAGAGGTCGTTGAGGAAGAGCGGGATGAAGGAGGCGTGCTTAGAGGCGAGGAGATTGAGCTAGAAGGTCTTGAGGGCTCGGTGATGTCCTGGAAGGCGCAGACGCAGTAGCTGTCGGTGAAGGAGGTGAAAGGCATGAAGGTGTCGTCGAGGACATCGCGCTTGTCGACCTTGGAGTTGTCGAAGAGGATTTGGGAAGAGACGCCGTCGAGGAGAGCGATGACTTTAGGGTTTGAGGAAATGAAGGGACCGGGTGGGATGTTGATTCTGATGACAGTTGATTTGTCTTTTCTTATGCTTCACATTTTCTTGATTAGGTAGCAAAGTGATTCAGAAACAGAAGTATGATATTTGTTTCTATATGTTGTGAACTCATGGTGCTTATAAAGTGGCTTTTGCAGGTTGAATACTCTCCTCATATGCAACATCAAGGAAAGAACATTCATTCTTCTTCTAGAATGCCAATCCCTTATGAGAGACATGTGTTCCTTCATATTGGAAATGGATCTGGTGATTCTAGTCTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCCTAGACAATGAGTATTTAAAATATATATTTGTTGATCATCAAATCTTGAAGAGGATAGAGAACTTTTATACTTCTTTTTTATTAATTGAATGATTCCAAGAGCTATTTCTTTTTTTTGCAGAGGCAACACCCAAAACGGTAATGAAACTCATGGGGATTTCAGGGCTTACTTTGTATCATCTGAAGAGCCATCTTCAGGTAAATATAATTAGTTTTCTGAGTAGGGGTTTTTTTGGTTTTTGATTTGGGAATTTTCGTAGGTTCTGATTTTGTCTCGCAGTGGTGAAAATGTTGGGCGAACTCGCGATTGGGTTCCTGCAATTTGCAGTTCTGTCTACGGTGGCTGTCATGGAAGCGTGATTTGGTTACTGGAGAAAATGAAGGATGACATTCTAGGAGCAATGTTTGGTGCTAGCAGTGCTTTTTGA