Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25854 LG6 28173403 28174801 PREDICTED: receptor-like kinase TMK3
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 28173407 missense_variant p.His2Arg
C/A 28173409 missense_variant p.Leu3Met
A/G 28173435 synonymous_variant p.Leu11Leu
A/G,T 28173487 stop_gained p.Arg29*
G/T 28173492 missense_variant p.Met30Ile
G/T 28173535 missense_variant p.Asp45Tyr
G/T 28173755 intron_variant
C/A 28173771 intron_variant
T/A 28173786 intron_variant
T/C 28173845 intron_variant
A/C 28173850 intron_variant
T/G 28173867 intron_variant
T/C 28173882 intron_variant
C/A,T 28173895 intron_variant
A/T 28173900 intron_variant
C/T 28173920 intron_variant
G/A 28173931 intron_variant
C/T 28173991 intron_variant
G/A 28174024 intron_variant
T/C 28174026 intron_variant
T/C 28174060 splice_region_variant&intron_variant
T/C 28174066 splice_region_variant&synonymous_variant p.Asp94Asp
C/T 28174103 missense_variant p.Arg107Trp
G/A 28174121 missense_variant p.Ala113Thr
T/C 28174129 synonymous_variant p.Asn115Asn
C/T 28174175 missense_variant p.Leu131Phe
G/T 28174211 stop_gained p.Gly143*
A/G 28174224 missense_variant p.Asp147Gly
G/A 28174230 missense_variant p.Cys149Tyr
C/T 28174237 synonymous_variant p.Pro151Pro
C/T 28174294 synonymous_variant p.Ser170Ser
A/G 28174308 missense_variant p.Tyr175Cys
T/C,* 28174381 intron_variant
C/G 28174390 intron_variant
T/G 28174394 intron_variant
C/G 28174396 intron_variant
G/A 28174439 intron_variant
G/C 28174450 intron_variant
T/C 28174455 intron_variant
A/C 28174464 intron_variant
T/C 28174465 intron_variant
T/C 28174467 intron_variant
T/C 28174470 intron_variant
T/A 28174474 intron_variant
C/T 28174479 intron_variant
G/A 28174498 intron_variant
T/C 28174503 intron_variant
T/C 28174519 intron_variant
A/C 28174539 intron_variant
G/A 28174555 intron_variant
A/G 28174580 intron_variant
A/T 28174599 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25854.1
MHLFHWKSLQLEPLSWKRRLNIALDVARRMEYLHSLAHQIFIHRDLKSSNILLGYDFREKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAAEYAVIGKVTTKADVFSFGVVLMELLIGLMALDEDRPEESQYLASWFWHVKSDKEKLMTAVDPALDIKEEMFDIVSIIAELAGHCTTREPNQRPDMSHVVLPENKETHPQRKNHEFGKEQNVKN*


CDS Sequence:
>Vu_25854.1
ATGCATCTGTTCCATTGGAAGAGCTTGCAACTAGAGCCACTCTCTTGGAAGAGGAGGCTCAATATCGCCTTGGATGTTGCTAGAAGAATGGAGTATCTTCATAGCCTGGCACATCAGATCTTCATTCACAGAGATCTTAAATCATCAAATATTTTGCTTGGGTATGACTTTAGAGAAAAAGTCTCGGATTTTGGATTGGTAAAACTTGCCCCTGATGGCAAAAAATCTGTAGTGACCAGGCTTGCTGGTACATTTGGATACTTGGCAGCAGAATATGCAGTGATAGGAAAAGTTACCACCAAAGCAGATGTTTTCAGTTTCGGCGTTGTTCTAATGGAGCTGTTAATTGGATTAATGGCACTTGATGAAGATAGACCTGAGGAAAGCCAGTACTTGGCATCGTGGTTCTGGCATGTAAAATCAGACAAGGAGAAACTAATGACTGCTGTTGACCCTGCCCTTGACATAAAGGAAGAGATGTTCGATATTGTCTCCATCATTGCCGAGTTAGCTGGGCACTGCACTACCAGGGAACCAAACCAAAGGCCAGATATGAGTCATGTTGTCTTGCCTGAGAACAAAGAGACGCATCCTCAAAGAAAAAACCATGAATTTGGGAAAGAACAAAATGTGAAAAACTGA


Promoter Sequence:
>Vu_25854::LG6:28171403-28173403(+)
CTATCTTCCATAAATAATTGGGAATTGCAACAATTGGACGTTAGTAATGCCTTTCTACTCTGTCACTTGTCCGAGGAGGTTTACATGAAGATTCCTCAAGGTCTATATGGGTATGAATCCTCACAGTGTTGCAAGCTCAAAAAATCTCTCCATGGGCTAAAACAAGCAAGTCGAAAATGGTATGGGAAAATCTCTAACCTTCTTCTCTCATCAGGTTATTTCCAATCACATGCTGATCACAGCTTGTTTATCAAGCATGAAAAAGGGAAATTTACTGGTTTGGGGGAACTCAAATATTTTCCACTGAAATAACAAAGCTCAAGCATATACTTCAATCCAATTTTTGAATTAAAGATTTGGGGGAACTCAAATATTTTCTAGGATTAGAAGTAAGCAGGTATGATGATGACATCTTTGTATCTCAACGAAAATACTACCTTAAGTTGCTTTCTGATTCAGGATTATTGGGTTGTAAACCGAGTTCCACTCTTATGGATACCTCTCTTCGTTTAAAACAAGCTAATTTGAGTGAATTACTTGATGATCCCCTATCCTATAGGCACCTCATTGGTCGTTTGATTTATCTCACAACGACTCGTCCAGACATCGTCTTTGCGACTCAACAATTAAGTCAGTTCATGGTAAATCCTGCAAAGTCTCATTTAGGTGCTGCAAAAAGAGTTATTAAATACTTGAAAGGTTGTCCAAACAAGGCGCTCTACTTCCAACGAAATTCTCCTATACACCTAATTGGGTTTAGTGATGCCGATTGGGCAACTTGCGTCTCCACACGCAGATCAGTCACAGGTTATTGTTTCTTCATAGGGAACTCTTTAATTTCTTGGAAAACCAAAAAATAGAATAATGTGTCTCGTTCTTCCTCTGAAGCAGGATATAGAGCCCTTGCTACTAGTACCTGTGAGTTGCAATGGTTAACTTACCTTCTCAATGATCTCAAAATCTAGTGTTCTAAGTCAACAACACTTTATTGTGATAATCAAAGTGCTTTATACATTGCTGCAAATCCAGTATTTCATGAAAGAACAAAACACTTGGAGATAGATTGTCATTTGGTTCGAGAAAAGGCACAAGCAGGATTAATGAAGCTTCTTCCAGTTCCATCATCTCGGCAACTTGCTGATATCTTCATTAAAGCTCTTCCTCCTCGGCTATTCCATGCAAACTTGTCCGAGCTAGAGATGGTTGACACTCCTTTCCAGCTTGCGGGAGGCTAACAAACTTGTACAATATGTTTTTTATAACAAACTTACAATCTTGCACCACTGCATATTTTTCGTTTTGTTATTTTGTCCGTTCTGTCATTTGTTATTTTGTTCGTTCTATCATTTGCTATTTTTTCTATTCTACTATTAGAATTCTAGAATAGAAGGGACTATTGTATATGAATATTGGATCATCGTTTACTGTAATATTGATTATTCATCATTGTTAAACACTTTCTCCTTTTATCATCTTTCGTTATAAATATATTACTTTAACCTTTTAAATTTATTGGTGAAATTCATTACAATACACACATTTCTCTTTAATAACATGAGATTCGAGAGAAAAGAGATGCATATATAAGAATAAGTTAGGTTTTTAAAATAAACAAGTGTTGTAAAATAATAAATTATCTTTAGGGTTAAATATGTTTTTAGTCCCTTAAGTATCACACGATTTTGGTTTTAGTCCCTATTCGAAACTTTGATGGGTTTTAATCCTCGTAGTTTTGAAACTATTAATATTAGTCCTTAAAAATGGATGGCGTTAAATTTTAGTAGATGTGGCAAACGGCGATATCCAACTGCGCTCTGCACTCTCTGCCACGTTGACCAATAAGAATACGTGGCCATTCTCGTTCTTCCTCTCTCACACGGCGAAGATCTAGGTTTTCGCTACAGTGCTCTTCCGGCATTTGGTATCTCTTTTGGGTTATTCAGTTGAAGGTAATGAGAGGATTCTGGTTTATGAGTATATGCCACAAGGGGCTCTGAGTA


Gene Sequence:
>Vu_25854(+)
ATGCATCTGTTCCATTGGAAGAGCTTGCAACTAGAGCCACTCTCTTGGAAGAGGAGGCTCAATATCGCCTTGGATGTTGCTAGAAGAATGGAGTATCTTCATAGCCTGGCACATCAGATCTTCATTCACAGAGATCTTAAATCATCAAATATTTTGCTTGGGTATGACTTTAGAGAAAAAGTCTCGGATTTTGGATTGGTAAAACTTGCCCCTGATGGCAAAAAATCTGTAGTGACCAGGCTTGCTGGTACATTTGGATACTTGGCAGCAGAATATGCAGGTAATTTTGTATTTTTTTATTTTGAAAATCTTTTATAATAGGAAATTTTATAATATTCCCGAATTTAATCAGGTTATTTTTTCTGTGACTTCTGTTGATTCTGTATGCTATTGCATGCTCTGTTGATTCTCTCTCTCTCTCTATATATATATATATATATAGTCATAATGGGAAATCTTGAAAATAAGTGAATACAATTTTAAAAATTTTCACAGAAAACAGAGAGAAATATCTCACCAGGGAGGATAGACTTAGTATGATTCTGCATGATATAATTATCAGGGACCATATTGAAACTTTTACAGACCCAAATGCATGATCCTGATGTGTTTGACACACTAGATTACACTGATTTCTTCTTTTTATATTATATATTTTAGTGATAGGAAAAGTTACCACCAAAGCAGATGTTTTCAGTTTCGGCGTTGTTCTAATGGAGCTGTTAATTGGATTAATGGCACTTGATGAAGATAGACCTGAGGAAAGCCAGTACTTGGCATCGTGGTTCTGGCATGTAAAATCAGACAAGGAGAAACTAATGACTGCTGTTGACCCTGCCCTTGACATAAAGGAAGAGATGTTCGATATTGTCTCCATCATTGCCGAGTTAGCTGGGCACTGCACTACCAGGGAACCAAACCAAAGGCCAGATATGAGTCATGTTGTGAATGTGAGTAGTGAGGGTGAGGGAGGAAGAATGAGAATGGCCACTTCAGTGTCAGATTTTTATTGACCAGCAACGTGGCAGAAAGTGCAGAGCACAGTTGGACATTGCCGTTTGATATTTTTACTAAAACTTAACGCCGTCCATTTTTGAGGATTAATACTAATAGTTTTAAAACTACGAGGACTAAAAACCATCAAAGTTTCGAGTAGGGACTAAAACCAAAATCGTGTAATACTTAAGGGACGAAAAACATATTTAACCCTTATCTTTATTATTTCATGAAAAAAATAAGTATAATAGTTAAATATTCCTTGGTTAAAATATATCTCTTGTGAGTAGTCTCTTCTCTTCCTCATGACATTATCAACCTCTAGGTCTTGCCTGAGAACAAAGAGACGCATCCTCAAAGAAAAAACCATGAATTTGGGAAAGAACAAAATGTGAAAAACTGA