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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25797 LG6 27298487 27299044 PREDICTED: putative dehydration-responsive element-binding protein 2H
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 27298655 missense_variant p.Glu130Asp
A/G 27298751 synonymous_variant p.Ile98Ile
T/C 27298925 synonymous_variant p.Arg40Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25797.1
MLVKDHNRGDGSKSLAYTLARWKEYNAWLESSNEAEKAVRKVPAKGSKKGCMKGKGGPENTLCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFSTAISAALAYDEAAKAMYGSVARLNFPNLEVSALSEESSRNSPAGSQCGSALVISESSECMIFPNSSEGDKAKDDDMEGLSLSLSVKHEVV*


CDS Sequence:
>Vu_25797.1
ATGTTAGTGAAAGACCACAATAGAGGGGATGGATCCAAGTCTCTGGCCTATACACTGGCGAGATGGAAAGAGTACAATGCTTGGCTTGAATCTAGCAATGAGGCTGAGAAAGCAGTTAGAAAAGTTCCTGCCAAAGGATCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAGAACACACTCTGTAACTACAGAGGAGTTAGGCAAAGAACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAGTAGGCTCTGGTTGGGTACTTTTTCCACTGCCATTAGTGCTGCTCTGGCTTATGATGAAGCAGCTAAGGCAATGTATGGTTCTGTTGCACGTCTTAACTTTCCCAACCTTGAAGTTTCAGCTTTATCTGAGGAATCATCAAGAAATTCACCAGCTGGTAGTCAATGTGGTTCTGCATTGGTGATATCAGAGAGTTCTGAATGTATGATATTTCCAAATAGCTCGGAGGGAGACAAAGCTAAGGATGATGACATGGAAGGCCTATCCTTATCCTTAAGTGTTAAACATGAGGTAGTGTAG


Promoter Sequence:
>Vu_25797::LG6:27299044-27301044(-)
AGGGAGGCTTCCTCCTCCTTTCCGTTTCTGTTTCGTCTTACAGGAGGAAAGAGATCTTGGCGGTTTGCGGCATAAGGGCAGTGACGCCATGATTTAGCGAAAGCAGCGGCAATATCGAGTTTGAGTTTAGGGTTCCTGTTGTTTTCTGATTTTGGGGATTAGGGTTTGCTGAAATTGGGAAATTAGGGATTTCTGGTGTAATTGATTTTTTATTCGAATTGAATTGGTGATTTGCGTATTGTTTCTGCGTATGGGTACAACATTTCTGGATTGTTTTGGGTTAGATTTCTCGTCGTAGGAGAGAGAGTGAGACTTTCTGTAATTGAATTTAATTAATTCTACTTTAAAAAAGTTTGTATCCCTAATCAATTTCTTTTTTTCAATTATAAATAAAAAGACCTAAATTCCTAAATGGGGCTTTCCCAACTTTGCCCTCACTTTAAACTCTATTTTTTAATTTAAAATTAAAAAAAAAGTTCAGTCACTTTTTAATGCCACGTAACAAAAAACTACACACTCAACATATCCTATTTAACGCTGATCAATTTGACGGAAAGGTCCTATTTGATTCAATTTTACAAAAATAAGGACCCAATTGAGATGCAAAAAAAAAAGAGTCTTAGTTGAGATTTTAAACAAAAATAGAGACCTATTAAGACATTAAACCTGAATATAAGCTTTTATAGTTGATAATGAAATTCTTGAAGTACATGGTCCAGCCAAAAGTTAAGATTTGAATAAACTTTTATGTGAGAATTATTTTAAGAATTTTGAACACACAAGGTTAATTTTTCCTTTTAATATTTTTTATTATAAGTTTTGTTTTTTTTAATCTTATTACTTAATTATAAAAATAATCATATACTATACCTTTACTGAATTTTATGAAAAATATTTTAAAGTCATCAATAGTGTGTATATTTTCTTAACAATATAAAAAATAGATTGATGTGTTATATGTTATTTCACTCAAAAGAAAATATAAAAAAAATGTAAAAATGGTAAATGTTATATAATTGTAGAAAAAGAAAGGCAAAAAAAAAATGTAGTGTAAGAATATTAGGAATTGAATTGTATCAAAATGAAATTGTTCATATAAACATAGTTGATGCTGTACAGAGGTTTCTGATGTTTGTTTGCATCGTCTGTAGAATCTTAGCAAAGTCGGCGACAGCTGAACCCTACTTTGATTTGCCCCAATTGAATCATGCCATGATTGACGCTTGTTGTAATTGTTTCCTCTTCATACACCAACTGGTCATATTAAAGTTTCTAAATTTAACGCGTAATCAGAATTTGCTCCCACAAATGTCATCAGGGTGACTCTTATTTTGATTCCGGTTAGGAAGATTTTGGTTACCACTGAGGTCAATCTTTCATAAAAGAGGTTAGTTTTTGTTTTCTGGGTAAGTCAATGTCACTTGTTTCATGCATTCACTAACTTTGCATTACATGCGTGGTTTCTTTTTTATCAGTGAATGTCATGTTTCTTTAAATTTTAGGACTGATGAACCTAGAATTAATAATTGCCAATTGTATGGGTGAAACATGTAAGAGGTGATTAATCACTGATATGGAAAGGACTTTGAAATGTTTGTGCTTGCGTTTTAAATATGCATTCCTTGTTAATCACTATATCAAGAATAACAAGTTATCTATTTAGAATCTAATTATGATGTGGTGTCAGTGCAGAGGGTTTTTGTAGTGCTATTCATCTGCAAGTTATTCACAAATAATTCAACATGTATGGTCAATTTGTTAACTTTTGTGCTTACCATTTAAAAAAATCATAACTAGGAGGGATTATGATTGACAGACGGGTAAAAATCCTTACACTGATAACGCATGAAAATTAAACATGTTTATCTGTTGTTCTCTTTTAAGATGAATATAGTATATTACATGTATAAACCTTTGGTCTTGTTTCTAATTATGCAAGGGGTGTGATTCAAGTGTTGTTTTCGCATTTCTACTGGTGAGGATTGCAACTTTGCATACTG


Gene Sequence:
>Vu_25797(-)
ATGTTAGTGAAAGACCACAATAGAGGGGATGGATCCAAGTCTCTGGCCTATACACTGGCGAGATGGAAAGAGTACAATGCTTGGCTTGAATCTAGCAATGAGGCTGAGAAAGCAGTTAGAAAAGTTCCTGCCAAAGGATCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAGAACACACTCTGTAACTACAGAGGAGTTAGGCAAAGAACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAGTAGGCTCTGGTTGGGTACTTTTTCCACTGCCATTAGTGCTGCTCTGGCTTATGATGAAGCAGCTAAGGCAATGTATGGTTCTGTTGCACGTCTTAACTTTCCCAACCTTGAAGTTTCAGCTTTATCTGAGGAATCATCAAGAAATTCACCAGCTGGTAGTCAATGTGGTTCTGCATTGGTGATATCAGAGAGTTCTGAATGTATGATATTTCCAAATAGCTCGGAGGGAGACAAAGCTAAGGATGATGACATGGAAGGCCTATCCTTATCCTTAAGTGTTAAACATGAGGTAGTGTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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