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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25762 LG6 26920891 26922238 PREDICTED: myb-related protein Myb4-like
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Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/C 26920964 missense_variant p.Phe211Val
G/C 26921647 intron_variant
C/T 26922126 missense_variant p.Arg38His
G/T 26922136 missense_variant p.Pro35Thr
G/T 26922140 synonymous_variant p.Gly33Gly
C/A 26922141 missense_variant p.Gly33Val
C/T 26922142 missense_variant p.Gly33Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25762.1
MVRAPYFDKNGTKKGAWCEEEDKKLIAYVQNHGHPNWRQLPKFAGLQRCGKSCRLRWMNYLRPNLKRGNYTPKEEQIITDLHKKHGNKWSLIAESLPGRTDNEIKNYWHSHLKKFQNSNNNSSCDEDLKSNGCKEFEMEMNEGHSVESHHILESSVSITSETSYTDHNSPCLSFCSSHTESTMNLCKEEESVASWETLDLGFSSNFWTEPFISENALDEDYFHISSYGTEPFYLW*


CDS Sequence:
>Vu_25762.1
ATGGTAAGAGCTCCCTATTTTGATAAAAATGGAACAAAGAAAGGAGCATGGTGTGAAGAAGAGGACAAGAAGCTTATTGCCTATGTTCAGAATCATGGCCACCCCAATTGGCGTCAACTTCCAAAGTTTGCAGGGTTGCAAAGATGTGGAAAAAGTTGCAGACTTCGATGGATGAATTACCTCAGGCCAAATCTAAAACGAGGGAACTACACCCCCAAGGAAGAGCAAATCATCACTGATTTGCATAAAAAGCATGGAAATAAATGGTCTCTGATTGCTGAAAGTTTACCCGGAAGAACAGACAATGAGATAAAGAACTATTGGCACAGCCACCTAAAGAAGTTCCAAAACAGCAACAATAACAGCTCTTGTGATGAAGATTTGAAGTCCAACGGATGCAAAGAGTTTGAAATGGAAATGAACGAGGGTCATAGTGTTGAATCTCACCACATTTTGGAAAGTTCAGTGTCAATTACCTCAGAAACTTCCTACACCGACCACAATTCCCCTTGTCTTTCATTTTGTTCAAGTCACACAGAATCAACCATGAACTTGTGCAAGGAAGAAGAAAGTGTTGCTTCATGGGAAACATTGGATTTAGGGTTTAGTAGCAATTTCTGGACCGAACCCTTTATTTCAGAAAACGCACTTGATGAAGACTATTTTCACATTTCCTCTTATGGGACAGAACCATTTTACTTATGGTAG


Promoter Sequence:
>Vu_25762::LG6:26922238-26924238(-)
GTTCAATTTAATTTTTTAACTTTAAAAATATATAAATTTAATTTTTTGAACCAAATTTTGTTAAATTTAAATAAATTAATTCAAAATTTTGGAAAAGAAACTAATTTTAATTTTTACTAAAAGGTAAAACACAAAAAAAACATATTTAACCTTTATATATTTAATATCATTGATTTTTTATAAATTTTAATTACATAAAACCTATGACGTTTAAAATACATTATTTTTAAAATTTTTTTATTAAGTAAAATAAAATAAATAATATATTTAAAATTATTGAATTTTATAAATTTTAATTACATAAGACCTACAACGCTTAAAATACGTTATTAACTAAAATAAAAGTAACAAATAGTAATAATGTGATAAAATATTAGTTTGGGGCTAGGAATAGTTATGTAATTTTTTTGCATTATCAGTGTCAACGTAATCATTTTTATGAATTGAAAAAAATGAAAAAAAATCCAGAGAATTCTTTTTTTATCGTCTACGTTGTGGATACCATTTATTATGAAGAGACCATCTTTCATTCGTTTGTTGTAAATTATTTCACTACAGTCACTGTAAAATTAGAATTTACATTTTTTTCCCTAAAGTTGATCACTGCAGTTCGATGTTTGATTTTTGTTAAAAGTGTGTAAAAATTTTATTTCAAGCAAAACTATTTCCAAAAAGATATACGGGACATAATAAATAAATAAATAAATAAATAATAAAAGAAGCGCACTGAGATATCGTATTATAGTCGATCTTAATTATTTTAGTACTCTAGCACTTTCCATGAATCATGGCATTGGCAAATAGGGCCCATACAGTAGAAAATGAAAATACCAAATAGGTCCCATACAGTGCATATAATATAATTTTGCTTTACATGTGTTTAAAAGAAAGTTAAAGTATTGGTTTTCCATTCCTTTATATAAAGGTTAAACATTTGGAAGAATATAATATTAAAATATTGGACTAAGTAGTCCAGTATCTTCATTTTCTTTTTATTCTTTACTTTTTTAACTCTTGTTAATTTATCTACCTTATTGTTTCTCCACTACTATGTTTTGTCTTTCTGGTAAGGTAAACCTACGTATGATAAACACTGTTTCAGATAATGATGAATATCTCAAAAAACTACTAAAATACTAAGAATTAAATTTTAAATTTGATTTTACTTGAAAAAAATAATCAACAAATATTATTAAAATATATTATAATTATAACGATAATATTATATTAAATTATATCGTATCACCAATCAGTTTCTCGTTGATCAAAGGATTAATGTTTTTGAAGGAATGTTGGAAGATCATTAGTAATATTAGGTTTTCGATAGACTGAACGGCTTTTCAAATATGTTGATCGATGATTCTAATATTAAACATCAGTATTACAAATTCAACATATTTACCGATAAAATATATTAATTGAGTTTTAGATCCTTTGAATTATGATTAAATCAGTTTTAAATAAAAATTCATTTCAAAATTTATAAATATAAAAATAAAATAAAGAATTAGATGGTTAAAGATTTGACACAAATACATACATTGAAAGAATATTAACTATGATTCTCAACCCTATATCCAAAACATAAATAATAAATTTTAAATCGAATATAAGAAAACGAAAATGAGGTTTTTATAAATTAAAACAAGTTCGTACTGATTGATGAACATGTTTCTTGGAAACATATAGGACCACTAAAGATACCGTAAAATAATGTGGGAAGAAGGAATGAAGATGTGGACAGTTGGACACTGTTGTCTTTCTCATGTGAATGGATGCAAAACTGTGTTTACAAGCAGTCTTAATAAAATGGAGTGGGTCCATGGGTCCATCCTTGGATTATATAAGTTCTGATTCATGATTGGAGATGTCAGAACACATGATACGCGTTTGTTTCAACTCCACTGTATCAAAAACAGAGGAACCCAATTCTCTTTTGCTTTCACCTCATTTCTCTACCTTAACTTGGCTCTCAGAAACAAACATATTCCAACACCACC


Gene Sequence:
>Vu_25762(-)
ATGGTAAGAGCTCCCTATTTTGATAAAAATGGAACAAAGAAAGGAGCATGGTGTGAAGAAGAGGACAAGAAGCTTATTGCCTATGTTCAGAATCATGGCCACCCCAATTGGCGTCAACTTCCAAAGTTTGCAGGTTTTACATCACTCTCATCAATCATCAGATCCATTTAGAGTTTCTTCATTCATCCTTTTTACTTTTCTGTCTAACAGGGTTGCAAAGATGTGGAAAAAGTTGCAGACTTCGATGGATGAATTACCTCAGGCCAAATCTAAAACGAGGGAACTACACCCCCAAGGAAGAGCAAATCATCACTGATTTGCATAAAAAGCATGGAAATAAGTACGCCTTTTGTTGCTTCTAATTAATTTTCAAAGTTTTAAGTTTTTAATTCATACTCACAATGTTTGTCATCGACTTTTACATTGCTGAAAATGTCGCCCACAAATATTCTGGATACTGTCGCAGCTACGGTTGTAATGAGTCAGAAAATCTTGATTTTAAAGTCCAAACCAGTTTTTAAAAGGATAAAGTTTATGTATCATAATGTTAATTAAAGTTTGACTTATGTAACAAAACGACAAATCTAATTTCAATTGAACGACAATGCTAACAAAAACGTCTGTGACAGTGTACAAAGGATTTGTATTTTTCAAAACCATGTTACTTACTTGCTTAATAATTCAATTTGGTCATGTCGTTTTGTTGATTTGATGAATAGTTTCCACTACAAGTATAGGCATCAAATATATGCACCAGTTCTAGTTTTGGTGTTACTGTTATGTATAAAAAGAGAAACAACTATTCAACATCTTCAGTTGTTTGACAATTGTTCATTACAATGAGAATTCAGTGAACAAAGGGTATTTTACTGATTTGTATTTGGTGTGAAATTTGTGTGATAGATGGTCTCTGATTGCTGAAAGTTTACCCGGAAGAACAGACAATGAGATAAAGAACTATTGGCACAGCCACCTAAAGAAGTTCCAAAACAGCAACAATAACAGCTCTTGTGATGAAGATTTGAAGTCCAACGGATGCAAAGAGTTTGAAATGGAAATGAACGAGGGTCATAGTGTTGAATCTCACCACATTTTGGAAAGTTCAGTGTCAATTACCTCAGAAACTTCCTACACCGACCACAATTCCCCTTGTCTTTCATTTTGTTCAAGTCACACAGAATCAACCATGAACTTGTGCAAGGAAGAAGAAAGTGTTGCTTCATGGGAAACATTGGATTTAGGGTTTAGTAGCAATTTCTGGACCGAACCCTTTATTTCAGAAAACGCACTTGATGAAGACTATTTTCACATTTCCTCTTATGGGACAGAACCATTTTACTTATGGTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
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