Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_25713	LG6	26193542	26194819	PREDICTED: ethylene-responsive transcription factor ERF054-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to heat, regulation of transcription, DNA-templated, response to heat, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus
Molecular Function	enables	transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, sequence-specific DNA binding

SNP	Position	Effect	Amino acid change
A/G	26193638	synonymous_variant	p.His394His
T/A	26193789	missense_variant	p.Gln344Leu
G/A	26193806	synonymous_variant	p.Thr338Thr
G/A	26193836	synonymous_variant	p.Thr328Thr
G/T	26193935	synonymous_variant	p.Ser295Ser
T/A	26194140	missense_variant	p.His227Leu
G/T	26194159	synonymous_variant	p.Arg221Arg
G/A	26194195	missense_variant	p.Pro209Ser
C/T	26194211	synonymous_variant	p.Gly203Gly
C/A	26194310	missense_variant	p.Gln170His
G/A	26194449	missense_variant	p.Pro124Leu
G/C	26194450	missense_variant	p.Pro124Ala
A/G	26194457	synonymous_variant	p.Phe121Phe
G/C	26194659	missense_variant	p.Ala54Gly
T/C	26194662	missense_variant	p.Asp53Gly
C/T	26194666	missense_variant	p.Asp52Asn
C/T	26194760	synonymous_variant	p.Glu20Glu
C/T	26194803	missense_variant	p.Gly6Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_25713.1

MASNSGKSGKEGVEETHHHEVFGESEGRDSEKEKGKCVDLSSGRRQWKPVFDDASISQRPLKKIRSPEHQSPNQQPSSSSSSMLSLQPPSSRIVFPFAFEGNQHPMPSFPHSFGTTNLPLFRPPLQPTQQMISFGSQQNMGYPQFLCPDSTVPNQQQLQQQQQQQQYQYQQQQQLLQYWNDALNLSPRGRMMMMMMNRSGHEGRPMLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEPSTPAPASSSNEGSTSTSSQNTKQPEPVPEETNTESEDMPPTETLAEENAETEEGVSQPQELVWGEWFNTIPAGWGPGSPVWDDLDHNNLLLHSQLPFVNQSHQEFHHDAAGASSQTQQDNNNAGPGSSSPSCSMRPFF*

CDS Sequence:
>Vu_25713.1

ATGGCGAGTAACAGTGGAAAGTCCGGCAAAGAGGGTGTTGAAGAGACCCATCATCACGAGGTGTTTGGTGAAAGTGAAGGCCGGGATTCGGAGAAAGAGAAGGGAAAGTGTGTGGATTTGAGCTCAGGGAGGAGACAATGGAAGCCAGTTTTTGATGATGCTTCTATCTCACAAAGGCCTCTCAAGAAAATCCGCAGCCCCGAACACCAAAGCCCCAATCAGCAACCTTCTTCATCATCTTCCTCTATGCTCTCTCTCCAACCTCCTTCATCGAGAATAGTGTTTCCTTTCGCTTTTGAAGGCAATCAACACCCAATGCCATCATTCCCACACTCATTCGGAACCACAAACTTGCCTCTTTTTCGTCCCCCTCTTCAGCCAACGCAACAAATGATATCGTTTGGGTCCCAACAGAACATGGGGTATCCACAATTCCTTTGCCCGGATTCCACCGTACCAAACCAACAACAGCTCCAGCAGCAGCAGCAACAACAGCAGTATCAGTATCAGCAGCAGCAGCAGCTTCTTCAGTATTGGAATGACGCACTCAATTTGAGTCCAAGAGGGAGGATGATGATGATGATGATGAACCGGTCAGGGCATGAAGGGAGACCAATGTTAAGGCCTCAAGCACAGCCTTTGAATGCCACCAAGCTCTATCGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCTGAAATTCGTCTCCCTCGCAATAGAACTCGCCTCTGGCTTGGAACCTTCGACACTGCTGAAGATGCTGCCATGGCTTATGATCGTGAAGCCTTTAAGCTTAGAGGAGAAAATGCTAAGCTCAATTTCCCTGAACTCTTCCTTAACAAAGATAAAGCAGAACCATCCACACCTGCTCCTGCTTCTTCCTCCAACGAAGGTTCAACATCAACATCAAGCCAGAACACTAAGCAACCTGAGCCAGTACCAGAAGAGACCAACACTGAGAGCGAGGACATGCCACCAACCGAGACATTAGCAGAAGAGAATGCTGAAACCGAGGAAGGAGTTTCACAGCCTCAGGAACTGGTCTGGGGAGAGTGGTTCAATACAATTCCTGCAGGTTGGGGTCCTGGGAGTCCCGTGTGGGATGATTTGGATCACAACAATCTTCTTCTGCATTCACAACTTCCCTTTGTGAATCAATCTCATCAAGAGTTCCATCATGATGCCGCTGGTGCTTCTTCTCAGACACAACAAGATAACAACAACGCAGGACCAGGTTCTTCCTCTCCCTCTTGTTCCATGAGGCCCTTCTTCTGA

Promoter Sequence:
>Vu_25713::LG6:26194819-26196819(-)

TTGTCAGGTGATTAAAATATCATAAAAATTGTCTAACTTCTATTAAATTAAACAAACAACTTACAAGTCCATTTTGTGAGGTTGAGCTAACCTTAAAGTCTACTTCTTAACATGATATCAGAACTAGGGTTAGAGTCTATCCTAGCGATGTTTGTCGAACATGTTGTTTCATCCACTATCAGACCACTCATTAATGTCTAGTCTCACGCTCAAGATGTACGTGATGGGGTGTGTTGGAAGTCTCCTATGGACTAGGGATAAAGCCAATTTATAATATATAAGTGAATGCAAACCTTACTTTTCAAACCAGTTTGGTGAAATTGAATTAAGCTTAAAATTCACTTCTTAACAAAACAACTTATGAAAATTAAAATATAAAAATAAAAAAGAAATAACATTTTATAAACAAATAATTGAATACTTTAATTTTCACGTGATAAAAATATCATAGAAATTGCCTAACTTCTATTAAATTATTAACTTTCACAACCTTAATTGTCTAACTTGTATATGCTTGTGATTCATCAATATTGAAACGAAACAGGATGCTTGGCCCTTTTTTCTACAAAAGTCAGTATAAAAATTGAATTTTTATTATTATTTTAACTAGTTGACCTTTATGAAATCTAATGAGTTGACTTTTTCACCTACTTACAAAATTGTATCAACCAATAACCCTGTTTTTGTAATGGGTGAGCTTGTATCATTGAAATAAATATACACGCTTAAAGTACGAAGTTATTAAAAAAATTGAGTAACATACAAGTTTACTCTTTTCTATTTAAATTATATTCTTTATTTTAAATATTAAAAAAATATTTTTTTCTTCAACTGAATATTCTTCTATCGCATCCCAATACAAAAACTATGTCACGATTAATACTGTTTCATATATCTTTTCATTACAAAATGAAGTTCACAAATAATCCGTATATATAGAATGAACTCATGTTATTTAACAAGACTTAGCATGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAGTTAAAGTATAAAACTAAGCCACAATCACCATGTTATGAACTGAAATGGTATTCCCTAATTTCCAATAAATGGCCAAACAAGTTTTGAAAGAACATGTTATAAAGCACCTCACAGAAACACTCAACTTCCACAATAGCAATAACAGTGAGTTATCATATTAATATGTTTTCCCTTCTTTTCATCAAGTGTTACAGAACTGCCACATTAACATGTCTTTCCTTAAGGCAGAAGTCTCTTCTAATATGAACGACTCAATAAGATTTCTTTTATTTTATTTTTTGTGTTCATGACAACAGGATTTTTAACAAAGAGAAACCACATTAACATGTGTTTGGTTCCATCTCATGTCACCTATGTCGGACCCAGAGATGAATCCACTTGAGGGACACACTTTTAAAACTTTTCTCACAATGTAATATTCATATGTACATAATTAGTATCTTCTCCACATACCATGGTTTTAAGATTGGAAATTGGATGCACCCAGTGAGAAAATCCCTGTTTGCCGCACCATGGCAGTGACAGAAACAGTTAATAACTGTTTTTTCCCTCGAACCTCACAACACAACCAGTGAAGTGAGGTGAGTCAGAAATTGATGTTGAAGCTAAAGAAGAAGCGCGTGGGACCCACTCAGGCCAACCACTGACTAGACTTGTTACTGATTCTGTCTAACTTTTGCTGCATTAACTTGAAAAAGTTTGATTTCAACCCCTTTCTGCTTTCTCCCATATAAACCCCTTCCACTCCCCTGCTTTCACCACTTGCTGTCTCCTTTCTCTCTTTCTCAACTCAAACCTTCACACACTCTATTTGCTTCGCTTTGCTTATACACAACACGTTTTCACATGGGTCTTTCGAAAAGCTACCACCTTTGCCATTTTTGATTCTGATCAGAGATAGTTAATCACAGGCAGTACACCCAAATTCTGTCTTTTCTTTGGTGGTGGTC

Gene Sequence:

>Vu_25713(-)