Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25641 LG6 25248411 25249870 PREDICTED: zinc finger CCCH domain-containing protein 2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, negative regulation of seed germination, regulation of transcription, DNA-templated, negative regulation of seed germination, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   cytoplasm, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, protein binding, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 04121 Ubiquitin system [BR:ko04121]
SNP Position Effect Amino acid change
C/T 25248453 3_prime_UTR_variant
G/C 25248560 3_prime_UTR_variant
G/T 25249076 synonymous_variant p.Ser242Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25641.1
MSTLCAEHKFQLQPSHQLLSLKKSLRDLDIPPRKLLTRRSAADIFSDDILLHKYLAHTKSMESDDSDDVGDPYASDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGQCSSGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPQDSDKKKKGSNMSPHNNNNNNSNHCCLFCNCSSTCSPTSTLFGMSHFSPPLSPSSSSSSPSPSRFEPGHRHGVVSYNDVFSELMCSMEALNFGEASSVSASKPHTLLSWHDVSEDHKQFNVHSPTTATRGSFSNNANGRFWREESGSFSMNRNGRLFREESGVVDDVIAPDLAWVNDLLM*


CDS Sequence:
>Vu_25641.1
ATGAGCACCCTTTGTGCAGAGCACAAGTTCCAACTTCAACCCTCTCACCAGCTTCTCTCTCTCAAAAAGTCCCTCAGAGACCTTGACATCCCGCCAAGGAAGCTTCTCACGCGCCGCTCCGCCGCCGACATCTTTTCCGACGACATCCTCCTGCACAAGTACCTCGCGCACACCAAATCCATGGAATCCGACGACTCTGATGACGTCGGAGACCCCTATGCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTTCGTCGCTGCACTCGTAGCCGGAGCCATGACTGGACAGACTGCCCTTTTGCACACCCCGGCGAGAAGGCCCGCCGCCGCGACCCTCGCCGGTTTCATTACTCCGGGACCGTTTGTCCGGAGTATCGCCGCGGGCAGTGCAGCAGCGGCGATGCATGTGAGTTCTCTCATGGGGTGTTCGAGTGCTGGTTGCACCCTTCGAGGTATAGAACCGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCCAACTGAGAGTTTTGCCTCCCCAAGACAGCGACAAGAAGAAAAAGGGCAGCAATATGAGTCCTCATAATAATAACAACAATAACAGTAACCATTGTTGTTTGTTTTGTAATTGTTCATCCACCTGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCACCCTCTTCTTCTTCCTCTTCCCCTTCCCCTTCTAGGTTTGAGCCTGGCCACCGTCACGGTGTTGTGAGCTACAACGATGTGTTCTCTGAGCTTATGTGCTCCATGGAGGCTTTGAATTTTGGTGAGGCTTCGTCTGTCTCTGCTTCTAAGCCTCATACTCTTCTGTCTTGGCATGATGTCTCTGAGGATCATAAGCAGTTCAATGTTCATTCACCAACCACAGCTACCCGTGGAAGCTTTTCCAATAATGCGAACGGAAGGTTTTGGAGGGAAGAAAGTGGAAGCTTTTCCATGAATAGAAATGGAAGATTATTTAGGGAAGAAAGTGGGGTTGTTGATGATGTCATTGCCCCAGATCTGGCGTGGGTTAATGACTTGCTGATGTAG


Promoter Sequence:
>Vu_25641::LG6:25249870-25251870(-)
AAAAACAGCACCTTAAGCAGACTTTTGAGGAAAATTTTCTACAAATAACACTGTTAAAAGAAATTAAGAGCCCTGTTCCTGACAATTACAGTTATCCATTTGATTTGACTATTTACTATACATCAATTTATTAAATTTTGTCCATTTTAGTTGTCTTTGTTGGAATATTTAATTAGGGTGGAAAGAAAATGACAAAAAAAACCTCTGACTTTCTCTTCAGCGTTCCCATGAAATTACCTAACCTCGAAATAAGTTCTTACTTCACATGAAATTTAGCAGCAAAAGCAGTACATATTGAACAAGTGTCATTGCTGCCTCCTCAATCATGCTCTTTCAATATTCTTTCTTCTAGGGAAAGAAAAACAACAGTGGAAAAGCTTCCATTACAGTGATGCTCATAAATACTTTCCTTATGGTCACCGTGATGTCATCAATGCTTTCATTTCTGCAATGGGCCTAAATGTCTCCAATTTCAATCTAATGAATGGGCCTAATAAATAATAATGCTTGATCTCCAATCATTTTATCTTGTATTTTTAATTTTTGAAAATAATTCTAAAAATTAATTTTTTTATGATTTAAAAATTAATGAAGAATTTTTTTATCAAATTTTAAAATCTAATAAATATTTTTTGTTTTAGTTGAATTTCAAAATTTAATAAAATAAAAATCTTTATTAAATTTCAAAATTCAAATAAAACATAAAAAATGGAATGTAAACTTTTAAATTACAAATAATAGTTTAAAAATTTTGAAAAGATTAGAAATGTAAATTAAAATGATTAGATATACATGATGAAGTCCAATCAAATAAGAGATTGACACTACTTTTTATTTAAAATTTTAAGGTAACGAGTTATAATGAGTTTCTTATTTTTATATACTTTACATTTTTATTTTTATTCAATATTAGACTTAGACTCACATTTAAATTCCCAACGTTGAATTTTTATAGTTAAAATATTTTCTTATTTTTATGTATATAGTTTTTAAAAATGAATAGTATAACACCTGATATTATCAAAGTTTAATTACAATTTTGATACTTGTATTTTATAACATCAGTAATCTTGATAAATAATTTTTTTACAACTTTAATCTCTTAATGATTTAACTGTCCGTTATTTTGGTTTCTAAACCATTTTTTATGCAATTCTATTTTTTTAGTTATTAATACGTTGTTAAATTTTCAGTTCAACTATTCATATTCTTTTTATTTTTTCGGACAAAACATGTATAATTGGGTAAAACTTACGATACTGTGAAGTAAGAGAGGAGAAATTTGTTGTTTATATGTTTTTAAAACTACAAAATTGAATAAAATTATCGAGAATTAGAAATTACGTAAGAAAAAAATTGAAAATAATTACAGCATACAATACTTTTACTGACAACACCCGAATCAAACGTTGAAATCTGTTTATGTTATTATATATCATTCAATTATTAGATATATATTATTAATTAAAAGCTATGTCTTTGATTTCTTTGTCTTTTGATACTATTATTTGTTTTGAAGTGGCAAGAAAGGAAAAGAAGCCCAGACATTTGATCAATGAATTTGCCAAATGCTATCAAACCATGTGAAATGATAGTATAATCATAGGGTTTCAAGTCAAAATTAGAGTAATTCCCTGTGATCAGGCTCAGCCATTGTTAATACACCCGCACACATGATCTAGAACTTTCTTCATGCTTCCACGTGTGATGATTCCAACACAACCCAATCAAAGGTAAAATCCAAACATGGCATAGCATATTTCATTAACCAGCATTGTAACATTACACATAGCCCAAACACATGACTGCAACGAATTGTCACACTGCCACGTACCCTCTTTTGCATGGTTACACCAAATGCTATGCAGCCACGCCCATTCTCATCACCTATCCCTGTCATCTTCATTCTCTCTCTCTCTTCTCTCTCTCTCCTTCTCTCTCTCTTTCTCTCATGAACACCTCAACCACCCTATATAACTCACCCTTCTTCTTCTCTAACA


Gene Sequence:
>Vu_25641(-)
ATATCCATGCTCCACAAGCTCTCTTTTGTATCATTATTCATTCAGTCTTTTCCTTTACTACAATAAAATATGAGCACCCTTTGTGCAGAGCACAAGTTCCAACTTCAACCCTCTCACCAGCTTCTCTCTCTCAAAAAGTCCCTCAGAGACCTTGACATCCCGCCAAGGAAGCTTCTCACGCGCCGCTCCGCCGCCGACATCTTTTCCGACGACATCCTCCTGCACAAGTACCTCGCGCACACCAAATCCATGGAATCCGACGACTCTGATGACGTCGGAGACCCCTATGCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTTCGTCGCTGCACTCGTAGCCGGAGCCATGACTGGACAGACTGCCCTTTTGCACACCCCGGCGAGAAGGCCCGCCGCCGCGACCCTCGCCGGTTTCATTACTCCGGGACCGTTTGTCCGGAGTATCGCCGCGGGCAGTGCAGCAGCGGCGATGCATGTGAGTTCTCTCATGGGGTGTTCGAGTGCTGGTTGCACCCTTCGAGGTATAGAACCGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCCAACTGAGAGTTTTGCCTCCCCAAGACAGCGACAAGAAGAAAAAGGGCAGCAATATGAGTCCTCATAATAATAACAACAATAACAGTAACCATTGTTGTTTGTTTTGTAATTGTTCATCCACCTGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCACCCTCTTCTTCTTCCTCTTCCCCTTCCCCTTCTAGGTTTGAGCCTGGCCACCGTCACGGTGTTGTGAGCTACAACGATGTGTTCTCTGAGCTTATGTGCTCCATGGAGGCTTTGAATTTTGGTGAGGCTTCGTCTGTCTCTGCTTCTAAGCCTCATACTCTTCTGTCTTGGCATGATGTCTCTGAGGATCATAAGCAGTTCAATGTTCATTCACCAACCACAGCTACCCGTGGAAGCTTTTCCAATAATGCGAACGGAAGGTTTTGGAGGGAAGAAAGTGGAAGCTTTTCCATGAATAGAAATGGAAGATTATTTAGGGAAGAAAGTGGGGTTGTTGATGATGTCATTGCCCCAGATCTGGCGTGGGTTAATGACTTGCTGATGTAGTGTTATTATTAAAACGTCTTGAAGATGATGACAAAAGGTGCATGGTGGGATTTGTGACGAGGATTTACCAAGTGTAAATACATGTCGGAGCAAGCAACATATCCTTGGCTTCTATTGTTATTATTATTAATTATTGTTTCGAGTACTTTCATTGCTTTCTGAATTTTGTTTAAGGTTGTCAAAATTAGGTCTGTAATTTTTGTGTCCATTGTAACTAGATTTCATCTTTTGTTCGGTGGATTATGTAGAAAGGAAAGGGAAACCGATTCATGCAATGCAATGTTGAACTTTTCTTTTCT