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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25585 LG6 23962526 23963071 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   biological_process
Cellular Component   located in   nucleus
SNP Position Effect Amino acid change
G/C 23962557 missense_variant p.Ser172Cys
A/G 23962580 synonymous_variant p.Val164Val
C/G 23962661 missense_variant p.Lys137Asn
G/T 23962665 missense_variant p.Thr136Lys
T/A 23962776 missense_variant p.Lys99Ile
C/T 23963024 synonymous_variant p.Lys16Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25585.1
MQRNSSGMHPACAACKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAREDDRRRVVDSLTWEACCRQRDPIHGPYGEYTKVFNEYKKVLDELKRFRSQHQMLQFPSLGFKSLQDKAEEDYLHGTKNAIIDSDIYNSYCSNYLQEFQNLRPEVLIPFQHHSQPYYITGIL*


CDS Sequence:
>Vu_25585.1
ATGCAAAGAAATAGCAGTGGAATGCATCCTGCATGTGCAGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAACTGCATATTGGCACCTTACTTTCCATCAAACAGAAGCCGTGAGTTTCATGCTGTGCACAAGGTTTTTGGTGTGAGCAACATAACCAAGTTGGTAAAGAATGCTAGAGAGGATGATAGAAGAAGAGTGGTGGATTCATTGACATGGGAAGCATGTTGCAGACAAAGAGACCCTATTCATGGCCCTTATGGAGAGTACACAAAGGTTTTCAATGAGTACAAGAAAGTGTTGGATGAACTCAAGAGATTCAGAAGCCAACACCAGATGTTGCAGTTTCCCTCTCTAGGGTTCAAGTCTCTGCAAGACAAAGCAGAAGAAGATTATCTGCATGGGACAAAGAATGCTATTATTGATTCTGATATTTACAACAGTTATTGTTCTAATTATTTGCAAGAGTTTCAGAATCTCAGGCCTGAAGTTCTCATACCCTTTCAGCATCACTCTCAACCATACTACATTACAGGTATTCTTTAG


Promoter Sequence:
>Vu_25585::LG6:23963071-23965071(-)
AAGTAATTGGTAGTTGGTATTTTAATACTTGCTTATAAATGGGTTGAATACGGATATTATTCCATTACCTAAAACATTAAAAATAAAAATTTAATTTATATTTTATTAATTTAAATTTAATTAAAATTAAAATTAAAATTAATTTATATTTTATTAGGTTAAATTTAATTAAAATTAAATTTTAATTTATATTCAATTTATTTTATATCATATTTTATATATTTTTTTGTAATTTTTTTTAGATTTCATTTTAAAAATTTATAAGATATATTTTTTTAAAAATATTTATGGGTATCTATGGATGCTCATGAGTTTTGAAATATCTGCATATATTTTTCAAACGGGTATGTAAGTGATAACAAGATAAGTAAATATATATTTTTTTGTTGTTGATGAAATAATGAGTAGATACTATTCTTGTTAGACCCAACTTCCCATCATGATCCCTACTTATAAACAAGTTTTTTTTTTTTTAATTTTGTTGTAGGATAGACTTTATTGAACGTAAATTTATTTAGTAAAATTATATAAGTGTGATTCTTATTATTTAAAATAGACAGAGATATAAGGAAACAATTAAGGTATAAACTAGATGAATAAGAAAGGAACATAATAAGATGAAAAGAAAACAAAAATAAAGAAAAGTCCGCTGGATAGAAAAAAAAAAGAATGATAAGAAATTTTTATTTCCATTCAGAAAAATTCACCATTCTCACAATTTAATAAAAAAATTCACCAATTTTGTATATGAATCAAAATAAACTATAAATAAATGAATTGAATATTTATATCTATAAATTATTAAAATCTGAAATAAAGATAGAGGAAGAAAATATAGTCAATGTGAATCGACATACACTCTCAATGGAGAGCTGGTGTTTTTGGACATGCTAAGAATGCAATGAATATTACTTTATCAAATTTAATAAGATTTTCCATAAAACTAAACTAAATATTTTAAGACTAAATTTAAAAAGTTAGAAGTTGAGTATATCCTCAAAACAAAACTAGGAAGATTTGCTCTGATAACAAAGAAACATAGTTTTTCAATAGATAATATTGTATGAAGAAAACGTTTTTAGTTTAAATGTCTCCTAAGAAATCACAAGATATGTAGAAATAAACAATAAAAAAATGTTACACTTACCAATTTGCCTCACGTCAAGAACATGAAGATACCGAATGATTATTTACATGACTCATAGCAAAAGTTGCATGAGCAACCTCTAAAAGCTTAATCAGTCAACAACACTTACTATAATCATATATGATTCAGTGATCACCACTTTTTATATACCTTAAAAACTATACTCAAATTAAATAAATAAAAAATGAAAAAGTTTTAAATTTGAGAAACAGCTCACTGGTTTTTGTTCTACATTTAAAAACACCAAGAGGGAGAACTGACAAACCAATAATAATAATAAGAAGAATGATAACTTTTTTTTTTATTATTATCATATTATTATGTAATAATTAATTCATATAACTGCATAACACCTCTTTGTTTATCTCTTCCCTAATAAGATAATTAACGCGTGAATATGTCCTAAACATTTGTATCTAGTTTACTTAGACTTCTTCCTATATAAATAATTTTCCCTCCAAGAGACGTGAACCTGAACCATCTTTTCGTGCTCTTCCTAAACAAAACAGTTTTTCTTCCTAATATTTATATATATCTTATTTCTACAGATATTGATGTTTCATTCCCTTAATTCAAGACATTAAACATATTTGGTCGAGGTTTGTATCTTAAATTTTACTAGATTTTCTGTTTTGTCTCAGTGTTTTTCTTCTAAAGAAGAAGAGATAATTAAGCATGCATGGATATGACTGCATGTGGTGGGTGTCATCTTTAACGTAATACATGTTATAATTGCCAGTGTCATACCCTACCATAAAATTTTATGAGATGACAGTATAAAACTTTTTCTTTTGCTCTTATCTGTGTATGATTGGTTATATATGATGATGAATTCTTGAAACATGTTTGACAG


Gene Sequence:
>Vu_25585(-)
ATGCAAAGAAATAGCAGTGGAATGCATCCTGCATGTGCAGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAACTGCATATTGGCACCTTACTTTCCATCAAACAGAAGCCGTGAGTTTCATGCTGTGCACAAGGTTTTTGGTGTGAGCAACATAACCAAGTTGGTAAAGAATGCTAGAGAGGATGATAGAAGAAGAGTGGTGGATTCATTGACATGGGAAGCATGTTGCAGACAAAGAGACCCTATTCATGGCCCTTATGGAGAGTACACAAAGGTTTTCAATGAGTACAAGAAAGTGTTGGATGAACTCAAGAGATTCAGAAGCCAACACCAGATGTTGCAGTTTCCCTCTCTAGGGTTCAAGTCTCTGCAAGACAAAGCAGAAGAAGATTATCTGCATGGGACAAAGAATGCTATTATTGATTCTGATATTTACAACAGTTATTGTTCTAATTATTTGCAAGAGTTTCAGAATCTCAGGCCTGAAGTTCTCATACCCTTTCAGCATCACTCTCAACCATACTACATTACAGGTATTCTTTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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