Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25576 LG6 23860034 23861520 Transcription factor TCP subgroup
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 23860365 intron_variant
T/C 23860424 intron_variant
A/C 23860429 intron_variant
C/G 23860868 missense_variant p.Cys171Trp
G/T 23860891 missense_variant p.Gly179Val
T/C 23860895 synonymous_variant p.Arg180Arg
C/G 23861167 missense_variant p.Pro271Arg
T/A 23861205 missense_variant p.Leu284Met
T/A 23861293 missense_variant p.Phe313Tyr
T/C 23861392 missense_variant p.Leu346Pro
C/A 23861492 synonymous_variant p.Ala379Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25576.1
MSVTFWDQHSGRIVTIQSLWVAAADEGLRATIVKGNSKQSKVCIGRSSHGIEPSTLDQAIKHRKHNREGTFTRVMRSSVGDIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWHPPIHEEKQNDAAGSSGIMAVEQQQEEPHQQQSESCGYNFQLHRQLGAFISTHVDTDPINFQTNNNSEDLGLSLHCFQDHPGLINWPSQQGANQAPPSNEHQIQTLFAGSTPVSFENHYQRTVTWNNEATTGDHVSRMGFFLNSQPFIGQGSASAYAQSETLQSSFSFPMTSSEHQRPQPVHQPSIFGSRFAVSDGLTGFCIPDRIQDVEENHGDASNRPSSSPSSIH*


CDS Sequence:
>Vu_25576.1
ATGAGTGTGACCTTTTGGGACCAGCACAGTGGCAGAATTGTCACAATTCAAAGCCTGTGGGTAGCCGCAGCAGATGAAGGACTACGGGCAACTATAGTTAAGGGCAACAGCAAGCAAAGCAAAGTGTGTATAGGAAGAAGTTCCCACGGAATAGAACCATCTACTTTGGACCAAGCCATAAAACACAGGAAGCATAATAGAGAAGGAACATTCACAAGGGTCATGAGGAGCAGTGTAGGAGATATTGTTCAAGTGGAAGGAGGACACATTGTTAGGTCCACGGGTAGAAAAGATCGCCACAGCAAGGTCTATACTTCCAAAGGGCCTCGTGATCGCCGGGTTAGACTCTCAGCACACACAGCCATTGAGTTCTATGACGTTCAAGACAGACTTGGCTATGACAGACCAAGCAAGGCTGTGGACTGGCTCATCAAGAAGGCAAAGTCTTCCATTGACAAGCTTGCTGAGCTTCCTCCATGGCATCCACCTATTCATGAGGAAAAGCAGAATGATGCTGCAGGATCAAGTGGAATCATGGCCGTTGAACAACAACAAGAAGAACCTCATCAACAACAGTCAGAGTCTTGTGGCTACAACTTTCAGCTCCATAGGCAACTGGGGGCCTTTATTTCTACCCATGTTGACACTGACCCCATCAATTTTCAAACCAACAACAACTCAGAAGATCTTGGCCTATCTCTCCACTGTTTCCAAGACCACCCTGGCCTTATTAACTGGCCATCGCAACAAGGTGCAAATCAAGCACCTCCTTCAAATGAGCACCAAATTCAAACCCTTTTTGCTGGCTCAACCCCAGTTTCGTTTGAGAACCATTATCAAAGAACTGTGACTTGGAACAATGAAGCAACAACCGGGGATCATGTGAGCAGAATGGGATTCTTTCTCAACTCACAGCCATTTATAGGCCAAGGTTCTGCTTCAGCTTATGCTCAAAGTGAGACCCTTCAGTCCAGTTTTTCATTTCCAATGACTTCCTCTGAGCATCAGAGGCCCCAACCAGTTCACCAACCTTCCATCTTTGGCAGCAGGTTTGCTGTCTCTGATGGATTAACCGGTTTCTGCATTCCAGATAGAATTCAAGATGTGGAAGAGAACCATGGAGATGCTTCCAATAGGCCATCTTCTTCTCCTAGTTCTATCCACTGA


Promoter Sequence:
>Vu_25576::LG6:23858034-23860034(+)
TTCCATTTTGATAATTAAAAAAAATTACATTGTTTTTGTATTTTTGCCAAATATCAATATTGATTGTTTTGGAAGAATGTGAAAAGAATATCACTTAAATCTAAGTCTTCACATATGTCATAGCACGTGGCTTTTGGGGTGTCGTTTACAGTTTGGAATAGAATAAATTTAGATGATTGTTTTAAGTATTTACATAATATTAGTTTAAAATAAAAAAAGAGAAAACGCGTGTTCATCTAAGTGATAAAATATCTAGACTAAAATTTAATCTTTTCTAAAAAGGTGAGTTCAATTTTCATTTCACTTTACTAAAATTAACTTGCTAAAAATCCTTTTATAGATCAATCTTTAGACTCGTCTGTAAAAAACAAACATGAAAAATATAATGTTTTAGTTTTGAATGGTAAATACTTTTAAAAATAAAATAATACGTATTTTATATTTATATTTTCTTGAAACAAAATTTTACAAACATCAAGAATTTTACCATTCCTTAATCAAAGTTTAAGAAAATCAGATGTTTACTCTTGGCTTAAAGGCTATTAAATGGTAATATAAGTTCAACCTTCAATATTATTTAGGAAATATAGAATTTGGATTCTTTACTAAATTTTTTTGTTATTTATTTTGACATTTTAAAATATGTTAAAAACAATTTTAATATTATTATTAACACCGGTATATTTGAAAGGTTGAGCAGATAATAGTACCAAAAACACATAATAAAGAATCTGGTCACGGAGATATGGAAGTAAATAAGTAGGCAGATTAAATTTTTGCATTGATTTAAGCAGTTCAATTTTTTTTTAAAACATTGAAATTGTTGATTTAATATATGAAAATTAATTAAAATTATGATGAATTTTCTCGGAAAAAGGTTATTGAATCCGTCTCCATGTTCTCTCTTTTGCTGTTTCTTACCTTTTGTTTGTTTCCCTACAGCCTAAAAAGGATCCATCAGGCTGGTTAAATGCATGCGGCCTGTTTGACAATGGGTTTGAATGAGGTATTGTAAGAAAAAATTTCCTCTCTTGTAGGAAGCATTAATTGAGTTGGTAGAAAATTTGAAGAAGAACTTGATGATAAAAATGAGAGTGCATGATAGGGCATGCAGTTGTTTTAGAGGAAGCACTAATTGCTTAACATAGAGGAAAAGGAAGCAACAAAATGTAACATGTCATGATCAAAGCCTTGAAAAAGCGTGGGTGGAAGAGATGGCCATTGATAGTTACATGTGTATCATTCATGAACTTGATAATCATAGCTCATCACTAGCAACGTGGGGTTATTACAGTTACCATATAGGTTAAAGGGTACGTGCAGTAGAAGAGGAAAGTTGAGGTATCATTATCATTATCGTCTGGAATGATTGATGGATAACCGCACCCTTAAAGTATGTGTAGTGTAGTGCAGTTTATGTGTATGAAATAATGCATGTTGAGAAGTGTGGTTTTGCTACATGAATCTGTTTAGTTTTTGACTGTTGAAAATACCCGATTGACTGAAAAAGAGAAGGTTGAGATCCAAAGAGATATATATAACTGCAAGAGAGCATAGTGACATGGTTTCTTAACATTTGCGTTTGTGGGGCTACCAACTACCAAAATATCTTTAATTTCATCTCTGACCTCACCCTGCCACGCTTGGCAGAAGCATCCGCAAGCTTTTTCAATAGGCCAAGGTACCTTTTCCCTTCTCACTCTCTGTCCATCAATTCTTTGCTGCAAACCTTTTGAGCCATGTGATATACCCTCACCTCAAAGTTCAATAAATCAATACTTGAATGTTCTAGTAGTTTGTGCTTTTACCCTCCTAGTACAACAGGTTCAAGTTGAAAAAAAAAAAAAAAACTGCTGCATGTTAATTCTTCTCCAAGATTTGAGTTCCCATGTAGATGTCATCAGTTAACTTATCACAAATCTACTGATTTACCCTGTCCTTTTACTCTCTGTAGAAGAAGAGAACATAGATAAGATTACCGTAGGTCACATGAAGAAGCA


Gene Sequence:
>Vu_25576(+)
ATGAGTAATTAAGCTTTTTGTTTGTATATTTTCTTTCATATGGTTTTGTGAGTGGGTAAAAGGAATCTGAAAGATTGCAATTGCAGGTGTGACCTTTTGGGACCAGCACAGTGGCAGAATTGTCACAATTCAAAGCCTGTGGGTAGCCGCAGCAGATGAAGGACTACGGGCAACTATAGTTAAGGGCAACAGCAAGCAAAGCAAAGTGTGTCTGCCTAAGGAAAACCTATGAGAAAACAAACCCTTACAAGAAAAAAATAATAGAGCCGCATATAGAAGAGAAAAGGGAGAGATATTGAAAAAAAAAAAAAAAACTGGATTTCAGTGGGAATCAGTATCATCCACCAAGTCCTATACAAAGTCCACATGACTCACAACAACAAAACTTGATCAGCACACACACAGCTCATTATCAGGTATCTCAAAACCAACCTTCATATGTTGTAGGTATAGGAAGAAGTTCCCACGGAATAGAACCATCTACTTTGGACCAAGCCATAAAACACAGGAAGCATAATAGAGAAGGAACATTCACAAGGGTCATGAGGAGCAGTGTAGGAGATATTGTTCAAGTGGAAGGAGGACACATTGTTAGGTCCACGGGTAGAAAAGATCGCCACAGCAAGGTCTATACTTCCAAAGGGCCTCGTGATCGCCGGGTTAGACTCTCAGCACACACAGCCATTGAGTTCTATGACGTTCAAGACAGACTTGGCTATGACAGACCAAGCAAGGCTGTGGACTGGCTCATCAAGAAGGCAAAGTCTTCCATTGACAAGCTTGCTGAGCTTCCTCCATGGCATCCACCTATTCATGAGGAAAAGCAGAATGATGCTGCAGGATCAAGTGGAATCATGGCCGTTGAACAACAACAAGAAGAACCTCATCAACAACAGTCAGAGTCTTGTGGCTACAACTTTCAGCTCCATAGGCAACTGGGGGCCTTTATTTCTACCCATGTTGACACTGACCCCATCAATTTTCAAACCAACAACAACTCAGAAGATCTTGGCCTATCTCTCCACTGTTTCCAAGACCACCCTGGCCTTATTAACTGGCCATCGCAACAAGGTGCAAATCAAGCACCTCCTTCAAATGAGCACCAAATTCAAACCCTTTTTGCTGGCTCAACCCCAGTTTCGTTTGAGAACCATTATCAAAGAACTGTGACTTGGAACAATGAAGCAACAACCGGGGATCATGTGAGCAGAATGGGATTCTTTCTCAACTCACAGCCATTTATAGGCCAAGGTTCTGCTTCAGCTTATGCTCAAAGTGAGACCCTTCAGTCCAGTTTTTCATTTCCAATGACTTCCTCTGAGCATCAGAGGCCCCAACCAGTTCACCAACCTTCCATCTTTGGCAGCAGGTTTGCTGTCTCTGATGGATTAACCGGTTTCTGCATTCCAGATAGAATTCAAGATGTGGAAGAGAACCATGGAGATGCTTCCAATAGGCCATCTTCTTCTCCTAGTTCTATCCACTGA