Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25501 LG6 22453938 22458735 shaggy-related protein kinase eta isoform X2
Map

Annotations  
category   relationship type   keyword
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
A/T 22453952 3_prime_UTR_variant
A/C 22453967 3_prime_UTR_variant
T/A 22453989 3_prime_UTR_variant
A/C 22454120 3_prime_UTR_variant
C/G 22454127 3_prime_UTR_variant
C/T 22454395 missense_variant p.Arg408Lys
T/C 22454477 intron_variant
G/T 22454560 intron_variant
G/A 22454677 missense_variant p.Arg379Cys
G/T 22454686 missense_variant p.Pro376Thr
T/C 22454806 intron_variant
G/T 22454850 intron_variant
C/A 22454854 intron_variant
G/A 22454858 intron_variant
A/C 22454860 intron_variant
C/A 22454881 synonymous_variant p.Arg353Arg
A/G 22454896 synonymous_variant p.Tyr348Tyr
T/C 22454899 synonymous_variant p.Gln347Gln
G/A 22455005 intron_variant
G/A 22455076 intron_variant
A/G 22455078 intron_variant
T/A 22455093 intron_variant
T/G 22455103 intron_variant
G/T 22455108 intron_variant
A/G 22455117 intron_variant
C/A 22455144 intron_variant
G/T 22455168 intron_variant
G/T 22455212 intron_variant
T/C 22455235 splice_region_variant&intron_variant
T/C 22455817 intron_variant
T/G 22455842 intron_variant
T/G 22455850 intron_variant
T/A 22455853 intron_variant
A/G 22456278 splice_region_variant&intron_variant
T/G 22456302 intron_variant
C/A 22456304 intron_variant
A/G 22456318 intron_variant
A/T 22456319 intron_variant
A/G 22456335 intron_variant
G/T 22456576 synonymous_variant p.Arg117Arg
G/A 22456589 synonymous_variant p.Val112Val
A/G 22456638 splice_region_variant&intron_variant
G/A 22456653 intron_variant
A/G 22456680 intron_variant
T/C 22456690 intron_variant
G/A 22456698 intron_variant
T/A 22456703 intron_variant
A/T 22456705 intron_variant
C/G 22456733 splice_region_variant&intron_variant
A/G 22456735 splice_region_variant&intron_variant
G/C 22456741 missense_variant&splice_region_variant p.Gln97Glu
A/G 22456835 intron_variant
C/G 22456840 intron_variant
T/C 22456862 intron_variant
C/T 22456874 intron_variant
A/G 22456890 intron_variant
C/T 22456931 intron_variant
G/A 22456943 intron_variant
C/G 22456966 intron_variant
C/A 22456973 intron_variant
A/T 22456984 intron_variant
G/C 22456986 intron_variant
T/C 22456987 intron_variant
A/G 22456999 intron_variant
C/T 22457000 intron_variant
A/G 22457005 intron_variant
T/A 22457012 intron_variant
T/A 22457020 intron_variant
A/C 22457035 intron_variant
C/G 22457067 intron_variant
T/C 22457082 intron_variant
A/C 22457093 intron_variant
A/G 22457101 intron_variant
A/T 22457153 intron_variant
A/G 22457156 intron_variant
A/C 22457166 intron_variant
T/A 22457170 intron_variant
T/C 22457184 intron_variant
A/G 22457189 intron_variant
T/G 22457210 intron_variant
C/A 22457236 synonymous_variant p.Gly73Gly
C/A 22457262 missense_variant p.Ala65Ser
C/T 22457320 splice_region_variant&intron_variant
T/C 22457330 intron_variant
A/G 22457349 intron_variant
C/A 22457350 intron_variant
A/C 22457361 intron_variant
T/A 22457491 intron_variant
A/C 22457510 intron_variant
A/T 22457538 intron_variant
A/T 22457562 intron_variant
A/G,* 22457575 intron_variant
T/C 22457698 intron_variant
T/C 22457767 intron_variant
T/C 22457810 intron_variant
T/A 22457832 intron_variant
G/C 22457853 intron_variant
T/A 22457911 intron_variant
C/T 22457915 intron_variant
T/G 22457934 intron_variant
C/A 22457937 intron_variant
T/G 22457993 intron_variant
G/T 22458080 intron_variant
A/G 22458506 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25501.1
MASMPMGHHHQHQPPSAALPLQPSQPQQSQPQHEVPRRSSDMETDKDMSATVIEGNDAVTGHIIATTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEPVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVIKHYNTMNQRMPLIYAKLYTYQIFRGLAYIHTTLGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCLNSEYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGVSPEMVNRLIPEHIRRQTGLSSPHSTGT*


CDS Sequence:
>Vu_25501.1
ATGGCCTCCATGCCCATGGGGCACCACCACCAACACCAACCGCCGTCGGCGGCGTTGCCTTTGCAGCCATCACAACCGCAGCAGTCTCAGCCGCAACACGAAGTGCCTCGCCGGAGCTCCGATATGGAGACCGATAAGGATATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTCACAGGCCACATAATCGCCACCACTATTGGAGGCAAAAATGGGGAACCTAAACAAACTATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGCCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCGATACAAAAATCGTGAATTGCAGTTAATGCGTTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTGAACTTAGTAATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAAACACTACAATACTATGAACCAGAGGATGCCTCTCATCTATGCAAAACTGTACACATATCAAATCTTTAGGGGATTAGCATATATCCATACCACACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCACCCTCTTACTCACCAAGTTAAGCTTTGTGATTTTGGAAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATATGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCACTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTCGGTACCCCCACACGAGAGGAAATTCGTTGCCTGAACTCAGAATATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCATAAGCGAATGCCTCCGGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGGTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGCGAGCCAAATGCTCGTCTACCTAATGGCCGTCCATTGCCCCCGCTTTTCAACTTTAAACAGGAATTGGCTGGAGTATCACCTGAAATGGTCAATAGGCTGATCCCAGAGCATATTAGACGGCAGACTGGTCTCAGTTCCCCTCATTCCACCGGTACATAA


Promoter Sequence:
>Vu_25501::LG6:22458735-22460735(-)
TTATGTGTTAGTGAACGTTCGTTGTCTACGATCTTATTCTCAGTTGAACGTTCGGTCTTTACAAGGCGTTCGTCATAACAGTATATAATAGGTTTTAAAACGGTTTGCTGTTTTAAAATAGTCCTAATCACTTCCCATCATCTATCGCTCGTCCTAGTCACTGTCCCTCATCTACCGCTCGTCCTAATCACTTCCCCTCGTCTACCACTCGTCCTAATCACTTTCCCTCATCTACCGCTCGTCCTAATCCCTTCCCCTCATCTACCGCTCGTCCTGATCACTCCCTCTCTCGTCTTGATCGCTCCCCTCGTTTAGGGCCCCAGTAATGATTCCCACGATCTTCACTAATGATTCCCACGATCTTCACTAATGATTCCCACTTAACAAACTTCCACTAATGTTTCCCACTCCACCAACCCTCCAATTATGTCTGCCTACCTAATGATTCCATTATCAACAGTCATCCAATAGTCTCCTGTGGAATTTCAAACCAATAGATGTGATTAAAACATGTAAGAACCGAAACAAAATTATCATTGTATCATGATTTGTCAACTCAAATTAACAAAATAAATCCAAGAACGACAAAAATAGTTTTGGGTCTATTCAAGCAATTAAAGAACTTGATCTCAATACTCTATCAAATCTAATGAACATATATTCTAAGCATAGTTTATGAGAAATTCGTCCAAAAAGACAGCATATATTGCAACAAATTTATGTATTTCTACCATCCAATGAATCAGTACAATCTAAGGAAGTTGGTTTACTGGCAAAAGAGATTTGCAAGTCCATAAAATATCATCAAGGGAAGGGAAGGGACCAAGTGGGACTATTTTTGGTCCGGCGACACTCCGACGGCAGTCCGGCGGCCACCGCAAGGGTCCGGCACAGGGAAGGAAGCGGGTGGGAGGAATCGATACTCAAAACGCAAACTTGGTTGGCTGGGCCGGAGGGAAGACGATGCCGTCTTCGGTTCGTCTGCCAACACTGGCGCTGCGGCGACCCGCAAACGGAACTGCGTGGCTGGGTGGAAGACGACGGACACCGGCGGCACTGGATGGAGCGAAAACGGCAACGTCTACGGGCGGCGCGTATCCGGCGACAGCTGTGGTGGCTGGTTCGAAGGAAAGAAGGAAAGAAGGAAAGAAGGTGCTCCATCAAATGTTCTCCGTTTTCTCTCTCTCTCAAAATATTTGAATCTCAAATTTTCGAAACAACCCTAAAATTTGAATCTGCCCCCAATTCTGTCATTGCCACGTCATTTTAATTTTTGAAACGCACACCCCAATCTGCCCGTGCCCGTCCTCGCCACGTCAGCGTTGAAGCAGGTTTCATCAGACTTTCTCAGAACGCAGCAGCTTTTTCCAACCAAAACGTGGGCCGCTCAAACGCTGACACGTGTGCTGTGTCGAAATGTTGTCAAAATTTGTTGTCTAAGTATCATTTTCCTTTGTTTAATCAATAACCTCTTTTTTTTTTATATTTAATTCTTCCTTTGTGTTCTTGTTCTTTTTAACCTTTTCATCTTTGGATTTTTAAAACGAATAATTCCTTATCTCAATATCTTGACATAACTCAAATCGATATATTTCTTAAAAAATTGAGAAAAATATCCAGATCCAACTAATTATAAATGTATTTTAATCTTTTCTCATTTTGATGAAATATCTTCACTAATAACATGAATACAAACTTAAATCGTAGATTAAAAATTTAAAACAAATCTAACGATTAAAATTAACTCTCTTTCGGTGCTATCTGTAGTAGTCATGACAGGTGGTACAGTACATACTGCATGCAAACGTAACATCGGTTCCCCTGTAACTTACCACACTGAATCGAAAGACTACGGCTCTGATTCACGCGTGTTTACACTCTCCCGAAACTCGCGTGAGCTTCCTCTCTTTCTCTCTCCTTGAACATAACAGACAGGCCAAGAGAGAGAGAAAAGAAAAAACGAAAAAAGGGTGTAGAGAGAGAAAGTGAGGAGAGAGAAA


Gene Sequence:
>Vu_25501(-)
CGAACAAGACTGTGTCTCACATCATATGGCCTCCATGCCCATGGGGCACCACCACCAACACCAACCGCCGTCGGCGGCGTTGCCTTTGCAGCCATCACAACCGCAGCAGTCTCAGCCGCAACACGAAGTGCCTCGCCGGAGCTCCGATATGGAGACCGATAAGGTACTTCTGCTCATTGCACTCATAGAAAATCGTTATCTCTCGCTCTCTTAAGCTTTTGACTGGTTTTGGACTTGCCGGAGCTCCGATCACGTCGATTCGCCTCGGAAGCTTTGGAGTCGCCGAAATTTTGAGCGATCTACCGGTTTTACGTGCTCAACGGAGAAATCTCCGGCGACCCGATGATTGGAGTGGTTTTATCGTTCTTTCGGAGAGTGATGTTTATTGTCGTTGGCGAATTTGAAAAAATAGGAAAGGAAATTAAGTTTTACTATTTTGGAGTGTGTTTTGGTTGATGCTTTGAAGGTGGGGATCTTTAGCCCTGAAGAAATTGAAGTTAGGAAGATTTCGTGTTTTTTTTTCTGATTTTGTTGTTTGGAGAAAAGCAAAGGAATGAAAAGAAGTTAAAATGTGAAATCCCATGTTTCAGTTTTTTTTTCCCTTTAATTCAAGGAAAGAGATTCTGATTAGGTGTACTTAGCTGACCTGAGGAAACATTCTTATTTAGCAATAAGAATTTTCCCGCTGATAACAATTATCTTTTAGTCTGTTTTGGTTTTAGGTCATTTTTATTTGACTTGTATCTAATCTACTGTTAATTGTCTTTAGCTATGTTAATTCTGAATAGATTTTGTTTAGATATTTTTTATGTGTGTGAGTGACGACTTTCCTTCCCTTGTGGTAGATTGTTGTTCAAAAGTTCAAACGGTTAGTTTGCTTTGCTTCAGGGAATTAGTGTCCTTAGATTCTGTTTGTATGTGTCTTAAGTTATATTGGAGCCTTTCTTTATGCTTTCTTGTGAGCTGCTATAACCTGATTTAACTTTAGCTGATGTATGTTGTCTCTGAGCTCTTTCCACTTTGCCTTTCTTCAACTCACATTCTGATCTTTGGCTGATTTCATCTGGTAACCCTCTGATGCTTTATGTTCCATCGCTGTGCAATTTTCTTCTCGTATAACATTTGTTTTAACCAATGGATTATCTTGAGATCCTATACTATCCTTTCTTTCTTTTGTTTTCTCCTTCTCAAATTAACTACACTGGATATATGCATTAGTGTGTCTTCCACCGCATGCATATGATACTTGATAGGCAAATGATGTTGCAATATTTTGTGGATGTTCCGTAACCAAATTATCGATGATAGTTTTAAACATGTTATCATTGATGTTGTATCAATAAAAATATGGCATTCAACTACTGTATTAAGAAATTTGCATTACTGTATTAAATATCTATATGTTACTATAAGTTGCAGGATATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTCACAGGCCACATAATCGCCACCACTATTGGAGGCAAAAATGGGGAACCTAAACAAGTATGAATGTGTTATAGCCCCCTTCCTTCTTAACTTACAATTTTTTGTAAAAAATTTTCTTCATGCCTTCTTAAATTGTATGTGTTGTTGTGTAAAGTGGTTATCATTTTGATAGTTATTCATTTCTTTTTGGGGGATAGAATGGAATGACATTTAGTGGATGGGAATCGAAATTAATAAATTTCCCATTACATGTAAGGCTTATCAAAATATAATACTGGTCGTCAATCAAAGTTACCTTATTTCCCCAGTGCCTAGCTCACGATAATTTTTTATTTATCAACTATATGATGTATAATTTTGAAGAATTTAATTATGAAGGTTCAATAACTTTATGCATAAAATTGGTGATATTATCTGAATTTCATAATTTGTTTATTCTGGTTAATTTATTTGTGTGATTCCTTCGCTCATACCACTTGCAGACTATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGTATGGATGAACAATCACCAAGTTGACACCCATTCATTCTCTCCTATCAAGTATCTCATTGTTTTCCACCGCTTGATGGTATTCTCTTTTCTACCTAAAATATAGGCAAAGTGCTTGGAGACTGGAGAGCCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCGATACAAAAATCGTGAATTGCAGTTAATGCGTTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTGAACTTAGTAATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAAACACTACAATACTATGAACCAGAGGATGCCTCTCATCTATGCAAAACTGTACACATATCAAGTATGAACTCTTTTTTTCTGTTTTGTAATTTGGTTCATGTGTTGATTCAATACTTTGTAATGATTGGGTTTGAATTTGATGTTTAGATCTTTAGGGGATTAGCATATATCCATACCACACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTACGTTCTTCCTTCAATGTCTTTCCTATGAGTTGTATTAATTTATTCTAAATCTTTTTGCATATATGACTACAGGTTCACCCTCTTACTCACCAAGTTAAGCTTTGTGATTTTGGAAGTGCCAAAGTTCTGGTATGTTGATCTTCGTAGTTCTTGTACATATTATTGCTTCATGCTCATATGCCTCCATGATAATGGAGGAATACTAAAATCACATACTTCCCAGTGAACTTAGCTATGCTAAAGCTATTATAAGATCTTTCCATAAATGCAATACTGATTTAATAACCTGTTTATGTGATGATAATGATGCCAAGAATATTTACTCTGACCCTTTTTCTTTTCTATTATATGAAAAATAAATGGAACTGGTGGATGTAACATGTGATTTTTTTAATTCAATTATCAATTTCATGAAGATTCTCATGTTCACAACTTGCTAGGATATTATTATGATATTATTCTTCCACAAAAAAAACTATATCAGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATATGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGGTTAAACATTCTGGCTAAATATGTATTAATGTTGCTCATACCTAAGTTTTTTGCCTTTTTACTGAGATATATTATATTGACTTCCATAGTTTCAAATGTTTATGTAGCCACTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTGATTTCTCTTCTACATTGTTGTCTTTGTGATTTGCAACATATATTTACAGAGGTCATTATTTATGTGTTTTCTTGTAGGTTCTCGGTACCCCCACACGAGAGGAAATTCGTTGCCTGAACTCAGAATATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTAAAGTCATTTCTCAATCATCCTCCTTATGATATTCGACAATTTCTTTTAGACTTTAAATACAGATTACAAAGTTTGAAAATAGTTGTCCAAGTTAAAGTGAATAAATAGCTTGCTTTATATGTTACACCAACAAGGTTTTTGAGGGTGCTTTCCATTTTCTATGTTTAACTGATGAGTTTGATGATTTAACCAACCTCACCTAGTAAGATAAAGCTTGGTCGTTGACTATCAATCATTTGCTAGTTATTGACTCAATTATTTTGATGATTTATGTTCCAGGTTTTCCATAAGCGAATGCCTCCGGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGGTGCACTGCGGTGAGTTGAACTACAAAGATACCTCCCTTCACTACTCCCATGATATTAGATCTACAATACTTGTGATATGTTGTGGAATTAGTAAACTCAATTGGCATAATTTTCACTAATGGCCTTTGTTATTTCAGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGCGAGCCAAATGCTCGTCTACCTAATGGCCGTCCATTGCCCCCGCTTTTCAACTTTAAACAGGAAGTACGTGCATAAGTTATGTTTTTATATTAAATGTGGCATGACATGTATAGGCTGCAGCTTTTTTTACTGTGACTAGCTTTGCCCCTGTTCTTCATGATCCAAACAAATTAACAATTTCTCATACACCTAATTTGTGAACAGTTTCTAACCCCAAAAATTCTCTTAATGAATCTGTGATGAAAACTTGACGACAGTTGGCTGGAGTATCACCTGAAATGGTCAATAGGCTGATCCCAGAGCATATTAGACGGCAGACTGGTCTCAGTTCCCCTCATTCCACCGGTACATAAATATAAAGGGATAATGAAACGATGAGTAGCAATTGATGTGAATCAACAGAGGGGCTGATTGTGGCCTATATATAACTGGGGGTTCCAGCTTAATCTGCAGTTTTCCCCCCCTTGTGAAGATGTATACAAGTGCTGGTTGCTCGGCATTGCATGAAAGTTGGTGATTCAGTCTAGTATTTCATTCTAGTTAAGGCATACTTATCCCTGCATCTGTATATTGTTTTGGTCAGATTTCAGAAAGCTAGGAGTATAAAATGATAGCAACCATGTCTTCATATGTAGAGGGGCCCACCTGAATTATGAGGGGCCCCTGTTGTAGTTTGGCTTGTTTTTTATGTGATCATATTTATGATGTCGTTTATAATATGCTTATGACAAAATGTTTATTCAAAATAAGAATTTTCCTCTCTCTTT