Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25373 LG6 19575106 19576203 PREDICTED: GATA transcription factor 15
Map

Annotations  
category   relationship type   keyword
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
A/G 19575116 missense_variant p.Asp4Gly
A/G 19575121 missense_variant p.Thr6Ala
G/T 19575135 missense_variant p.Glu10Asp
A/G 19575178 missense_variant p.Thr25Ala
C/T 19575179 missense_variant p.Thr25Met
G/C 19575181 missense_variant p.Ala26Pro
G/A 19575183 synonymous_variant p.Ala26Ala
G/A 19575256 missense_variant p.Gly51Arg
C/T 19575265 stop_gained p.Gln54*
G/T 19575273 missense_variant p.Glu56Asp
G/A 19575275 missense_variant p.Gly57Glu
C/A 19575300 synonymous_variant p.Thr65Thr
G/A 19575301 missense_variant p.Val66Ile
G/A 19575364 intron_variant
A/G 19575461 intron_variant
G/A 19575463 intron_variant
C/T 19575468 intron_variant
T/G 19575482 intron_variant
G/A 19575619 synonymous_variant p.Ser94Ser
G/A 19575640 synonymous_variant p.Leu101Leu
C/T 19575695 intron_variant
G/C 19575717 intron_variant
G/A 19575756 missense_variant p.Glu110Lys
G/T 19575843 missense_variant p.Gly139Cys
C/T 19576085 missense_variant p.Ala191Val
G/A 19576103 missense_variant p.Gly197Asp
G/A 19576139 missense_variant p.Arg209Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25373.1
MPNDKTKMWEEDRHQQGGGMDELLTALGYKVRASDMADVAQKLEQLEMVMGSAQEEGISHLASDTVHYDPTDLHSWVQSISPIKGRRIHLDLFIGSLEEGFDALRQLEGSEGEDSDPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAIMGISKGNNEDGRKGKKSGGAGAAAIGGGALGREVLLHRSRWNSGGLVGVVVDRGIDRS*


CDS Sequence:
>Vu_25373.1
ATGCCCAACGACAAGACCAAGATGTGGGAGGAAGACCGCCACCAGCAGGGAGGAGGGATGGATGAGTTGCTCACGGCGTTGGGCTACAAGGTTCGTGCTTCCGACATGGCAGACGTCGCACAGAAGCTTGAGCAGTTGGAGATGGTCATGGGGAGTGCCCAGGAAGAGGGAATTTCCCACCTTGCTTCCGACACCGTTCACTACGACCCTACGGATCTCCATTCATGGGTCCAAAGCATATCACCCATCAAGGGTCGTCGTATCCATCTGGACCTGTTCATCGGTTCCCTGGAAGAAGGTTTTGATGCGCTTCGGCAACTCGAGGGATCGGAGGGTGAGGACTCAGACCCTAACGCGCCTTCCTCGGGGAACAGTCCAAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACTAAGACTCCACTCTGGAGGGGAGGTCCGGCAGGGCCTAAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTATGGGGATAAGCAAGGGGAACAACGAGGATGGGAGAAAGGGGAAGAAGAGTGGCGGCGCCGGGGCCGCCGCTATCGGTGGTGGCGCGTTGGGGAGGGAGGTATTGTTGCATCGATCACGTTGGAATAGTGGAGGCCTTGTTGGAGTAGTCGTTGATAGAGGCATTGACCGGAGTTAG


Promoter Sequence:
>Vu_25373::LG6:19573106-19575106(+)
GGAGGGATATTCCCTTTGGCATTGGTTGTTGAAAAGAGGGTGACATTCTCTTTGGCAAATAGTTGTAGAAAAGAGAATGGTACTCGAGTGTTGAATCTTCTTTGGTGAGGGGAATAGGGGAACAAGTCTGAAGCCAGAAGAAGGATGACTCGAGTGTATCTGTATGGGGAAGCTACATATGGGATTGTAGAAGCATCTACAGTCGGTGAGGTAAGGTACAAGAGTGTGACTGAGTCTTGTCATGTTAAAGTTCATGGTTTGGTTATGCTCACGGTGAGATTTATGATTTGGATAATCATGTTGGTGGTGTACCTATGATGATGATCAGGGATCGAGGATTGAGGATCGAGTAATTCGTTTAATTGAATTGTTATGTTAGAGGACTAGGACTCTTATTGTTATTATGATTATGTATGGGTTGTCTGATTATTATTGATTTAATCAGTATGTTTATATCATGTTATTATGATTGTTTTACCGGTAGCTTATTCATACATGTTTGTGTGTGTGCAAGTGAATGCGATGATCGTATAATGTGTGATGTTATACGTGAGCAGATGATGTTGCAGATGATGCTGAAGCATGATAGACTCGAGAGATGACAGGGGAAAAGAGATTTTATTTACAGTTATTGCTTTTGAACTTTGAGACAATGTAATTGAAGTTATTTTAATTGCTTCGTTATTTTCATTGGACAAGTGTTTTGGAACTATTATGTTTTATGCATGTTTAAATATTGAGGTTTCGAAAGTATGTTTCCGCATTATGTTAAAGTTTGAAATTTTTACCGATTTTTGAATAACCTGTAACACCTTGAAAATTTGGGGCGTTACATGTGCACTATACTTAGCACGAGCCGAAACCTTTTTTTTGGACAAGAAATTCACCTCCTCGCGCAGAAGGAAGTGACACTCAAATCTCTGTCTCTATATGAGACTCACATATCCTTAACATAATGCAATACGAAAAGCTCACACTAATCACAGTATAAGAAAATGACATAATTTCATATTTGCATCACAATCAACACACATTCTCAATAACATGTATTACTCAACCAATCAGAATGTTTAAACACAATTCTAATTATATTAATCATTCATCCACTAAGTTCAACCTCATTAAATGTACACTGAATATTTCCAACAACCCTTGTCTAACACATTGCAATAGTCACACTTCCTCTTTATATTAATATTACCACATAAAATAACAAGCACACCAGCACTCATAATCGGTCCTCTAAAATAATGAAAAGCGTAAATAACAAAATCCTACTCCAACACAGTACATCCAAAACCAAACCCGTGGCCCAACAATGGTCCGAAAGACCAATAAGAAAACGAGAAAGAAGGGAAAACTTCCCCCTCTAAAACAGCAACACATAACAAGAGAACCCAACTATGTTAAACTACCCACGGCTCTACACTCATTCTTGACTTTAATATAAAACAAACTCAACAAAACAGAGGCACACCCTGACCTTGCCCCTTGCATAAAAGCCCATGTGCCCAAAAGAGAACACTCCTCACATGAAAGAAACCCATTACCCTTTTTTTCTTTTTCCTCTTTCTTCAAGAGTTCGCGGGACCCACTCGTAGCAGGTAAGCCAACCCTTATTTCTCCTTCCCAACCAAAGGCGAGAAACTTACCTCCTGCATGCAAGCCAACACTCCCTTTTCTTCATTAATATTTGGTTTAATGTCTCGGTAGGTCCCTATTTTCGGCGTGAATCTTAAATAGGTCCCTATCTTTTCGGCGTTTTAATTGGGTCCTTTTTTGTGTAAAATTGTAACAATTAGGGGTCTGCCGTTAAATTGAACAAACGGCCGTTTAAATTTGGCCTACGTGGTATGGTCAGTGTATTCATTATCTGACGTGGCATTAAAAACGAATTTTGTATTAAAAATTTGGATTGCACAAATGTGAATTCAGATGGGCAAAGTGGGAAAATCCAAAACTTTAATTGTAGTCCCCTGTCAAGGGTGAGTGCTCCTCAA


Gene Sequence:
>Vu_25373(+)
ATGCCCAACGACAAGACCAAGATGTGGGAGGAAGACCGCCACCAGCAGGGAGGAGGGATGGATGAGTTGCTCACGGCGTTGGGCTACAAGGTTCGTGCTTCCGACATGGCAGACGTCGCACAGAAGCTTGAGCAGTTGGAGATGGTCATGGGGAGTGCCCAGGAAGAGGGAATTTCCCACCTTGCTTCCGACACCGTTCACTACGACCCTACGGATCTCCATTCATGGGTCCAAAGCATGTTGGCCGAACTCAACCCCGAACCCACCAACACCATCCTCGATCCCTCCTCCTTCTTGATCGAAAACCCCTCCCACTCTTCCTCCATCCTCACCTCCAACTCACGCATTTTCAACGACGACTCCGAATATGACCTCATAGCCATTCCTGGAATAACAGCATACCCTCCTCAAAACACCACAAACAACAATTTAGATTTTCCATTGAAGTTGTAACATGTATCACAGGACAGATCACCCATCAAGGGTCGTCGTATCCATCTGGACCTGTTCATCGGTTCCCTGGAAGAAGGTTTTGATGCGCTTCGGCAACTCGAGGTTAACTGGAAAAGTGACAGTTAGCTATTGTATACTGGTTTCGGGGTTTCTGATTAGGGTTTGTTTGATTAATGGAGGTTGTTGTGCAGGGATCGGAGGGTGAGGACTCAGACCCTAACGCGCCTTCCTCGGGGAACAGTCCAAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACTAAGACTCCACTCTGGAGGGGAGGTCCGGCAGGGCCTAAGGTCAGTACTCTCTCCATTTCCCAGATCGCGCCACCTGGACTAACATCCACCCTTGATCTCACTCTCTTGTCGTTTATTTTTTCAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTATGGGGATAAGCAAGGGGAACAACGAGGATGGGAGAAAGGGGAAGAAGAGTGGCGGCGCCGGGGCCGCCGCTATCGGTGGTGGCGCGTTGGGGAGGGAGGTATTGTTGCATCGATCACGTTGGAATAGTGGAGGCCTTGTTGGAGTAGTCGTTGATAGAGGCATTGACCGGAGTTAG