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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25334 LG6 18469035 18469630 PREDICTED: cysteine-rich receptor-like protein kinase 10
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 18469274 missense_variant p.Gly90Arg
C/T 18469514 synonymous_variant p.Gly39Gly
T/A 18469553 missense_variant p.Glu26Asp
C/G 18469573 missense_variant p.Ala20Pro
C/T 18469574 missense_variant p.Met19Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25334.1
MHLNMTNNKAPLICISGYMAPEYAMEGLFSVKSDVFSFGVIVLEIICGRKNRGFYLSEHGPTLLLYAWRIWCEGKCLEMMDPTLEKSFVGSEVERCIQIGLLCVQEDAKDRSTMSDVVVMLASEGMVLPKPKHPPFSIGRMTLVEFSTSNSSKNLSINDVTTSVTMPR*


CDS Sequence:
>Vu_25334.1
ATGCACCTTAACATGACAAATAATAAAGCTCCATTGATTTGCATTAGTGGATACATGGCTCCCGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTCGGGGTTATCGTCCTAGAAATCATTTGTGGGAGAAAAAATAGGGGATTCTATCTCTCAGAGCATGGTCCGACCCTTCTGTTGTATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAAATGATGGATCCAACGCTGGAAAAATCCTTCGTAGGAAGTGAAGTTGAGAGATGCATACAGATTGGTCTGTTATGTGTTCAAGAAGATGCAAAAGATAGATCAACCATGTCTGATGTTGTTGTGATGTTGGCAAGTGAGGGAATGGTCCTTCCAAAACCCAAGCATCCACCCTTTTCGATTGGAAGAATGACCTTAGTGGAATTCTCTACATCAAACAGTTCCAAGAACCTTTCCATTAATGATGTAACAACCTCTGTTACTATGCCGAGATAA


Promoter Sequence:
>Vu_25334::LG6:18469630-18471630(-)
TTATATTGGGTCGGAATGAAAAAAAGACGTGATAAAATTTATGGATAAATGTCTTATGTGCCAGCAACACAAGTACCTAACATCCTCACCTCGGGGATTATTACAGCCATTTCCTGTTCCGAATGCAGTGTGGGAAGAGTTAAGCATGAATTTCATAGTTCGTTTGCCCAGATCCAAGGGGTATGATGCAATTTTGGTGGTGGTAGACCGCTTGAGCAAATATGCACATTTCCGACCGCTCAAGTATCCCTACTCAACAAGAACGGTGGTTGAAGTCTTCATAAGAGACATCGTAAGGCTGCATGGGATTCCACAGTCCATCGTGACAGATAGGGACCCATTGTTCTTAAGTATATTCTGGAAAGAGTTGTTCAAGAGTCAGGGAATGCAGTTAAAAATGAGCACCGCGTACCACCCTAAGACGGACAGACAGACGGAGGTTCTGAATCGGGTTTTAGAAGGTTATCTCATGTGTTTCTATTCAGAGCAGCCAAGGGGATGGATGACTGTTTTGTCGTGGACGGAATATTGGTACAACACAAGCTATCAAGGAGCTATAAGGTGCACCCCTTTTGAGGCCGTGTATGGGAGAACGCCCCCCTCTTTGCATAGATTCATTCTTGGCGAATCATTGGTGGAGGCAGTGAGTCAAGAGCTTCAAACTTGGGATGAAGCCCTGAAACAATTGAAGTTTCATTTAAAGAGGGCACAAGAACTAATGGTCCAACAAGCTAATAAAAGGAGGAAGGCTGCAGATGTAGAAGTGGGGGATTGGGTATATTTGAAGATACGGCCCCATAGACAATCCTCGATGCCAACTAGGCTTCACCCAAAGTTGGCAGCCAGATATTTTGGGCCGTTCCAGGTTATTCAGAGGGTAGGGGAGGCAGCTTGTAAGTTGCAGTTGCCAGAGACAACACGAATTCATCCCGTCTTCCATGTGTCACAATTGAAGAAGGCAATAGGAGAACAAAGAGTAGAAAAGGAATTGCCACAGGACTTGCAGACAGAAGGGCTTTCATTCTGGCCAGTGCACATTTTAGGAAGAAGACAGTTGCAGGGAGAAGGGGAAAGTGTGCCACAATTGCTGGTAGAATAGCAAGAAGGAGGGCAGGAAGGGGCCACCTGGGAAGATGAAATGACTATCAGGGAGCAGTACCCCGATTTCAACCTTGGGGACAAGGTTGGTCTTCAAGGGGAGGGTATCGATAGGAATAAGGGTAATTAGCTGTAATAGCCTAACTGCCTATGATAGTTAGAAGTGGGCGGGAGAGGGGGTATAAATAGAGGCATGTTAGTTGGTAAAAGGGGATGTTTTGTTGAATTGTTTGTTGATAGTTTCTGACCTGTGAAGAGGGTTAAGCCTCTGGTTTTTTTCTGTGAATAATATTCAGTTTTCCCTATCTTTCTTGTGTCTTTTGGTGAGAAAGAGAGTTTTTGATTAGGTTCCCAATTTAGGAACCTATCAGTTCTACTTTCATAGCCTGATATTAAACTCAAGTTATAACATGCAATGAATAATCATGTTTAGATCATCTTTAAGGATAAACACTACATAATTCTCAGTAATTCTTTTCCAAGGTTAAGGCCAAACCCATTTGCTATTTGATAGATTTTGCTTCAAATACTGTCTTGATGCTCAATTTCTTCTTTGTTATTGTGTTGTCAGATGATGAGAGAAAAAAGCATTTTGATTGGAAATTAAGATTAAGAATTATCAATGGAATAGCAAGAGGTGTTTTATACCTTCATGAGGACTCTCGACTGAAAGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCCTGAATTGAATCCCAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAAAGGACAGAACCAGGCAAATACGAAACGAGTGATAGGCACATAGTGAGTTTACTCATACTAAACATTTCTTAAACCATAAGGTTTACGGAGGAATTATTAAGCATTTCATTTAGAAAAAAGAAATTCTTTGCTTTC


Gene Sequence:
>Vu_25334(-)
ATGCACCTTAACATGACAAATAATAAAGCTCCATTGATTTGCATTAGTGGATACATGGCTCCCGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTCGGGGTTATCGTCCTAGAAATCATTTGTGGGAGAAAAAATAGGGGATTCTATCTCTCAGAGCATGGTCCGACCCTTCTGTTGTATGTAAGTCTCCTCAGTTTTATATGGCCAAGAAACTATTCAACAATTCTAGTTAATGCTTGACAGTATTAACAAACTACAAATACTTGTAGGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAAATGATGGATCCAACGCTGGAAAAATCCTTCGTAGGAAGTGAAGTTGAGAGATGCATACAGATTGGTCTGTTATGTGTTCAAGAAGATGCAAAAGATAGATCAACCATGTCTGATGTTGTTGTGATGTTGGCAAGTGAGGGAATGGTCCTTCCAAAACCCAAGCATCCACCCTTTTCGATTGGAAGAATGACCTTAGTGGAATTCTCTACATCAAACAGTTCCAAGAACCTTTCCATTAATGATGTAACAACCTCTGTTACTATGCCGAGATAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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