Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25321 LG6 18257355 18260984 PREDICTED: putative disease resistance RPP13-like protein 1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 18257366 missense_variant p.Ile4Met
C/T 18258032 upstream_gene_variant
T/C 18258035 upstream_gene_variant
A/T 18258191 intron_variant
A/G 18258205 intron_variant
C/T 18258215 intron_variant
C/G 18258218 intron_variant
G/A 18258224 intron_variant
A/T 18258260 intron_variant
C/T 18258306 intron_variant
A/G 18258575 intron_variant
G/A 18258623 intron_variant
T/C 18258624 intron_variant
T/C 18258633 intron_variant
T/C 18258638 intron_variant
G/T 18258673 intron_variant
A/G 18258680 intron_variant
C/T 18258683 intron_variant
C/G 18258702 intron_variant
A/G 18258707 intron_variant
G/C 18258708 intron_variant
T/A 18258714 intron_variant
T/C 18258720 intron_variant
G/A 18258731 intron_variant
C/G 18258747 intron_variant
T/C 18258752 splice_region_variant&intron_variant
T/C 18258753 splice_region_variant&intron_variant
T/C 18258755 splice_region_variant&intron_variant
G/A 18258758 splice_acceptor_variant&intron_variant
G/A 18258766 missense_variant p.Arg208Lys
T/A 18258778 missense_variant p.Val212Glu
G/A 18258780 missense_variant p.Val213Ile
G/A 18258788 synonymous_variant p.Glu215Glu
C/T 18258789 synonymous_variant p.Leu216Leu
T/C 18258794 synonymous_variant p.Tyr217Tyr
G/T 18258996 synonymous_variant p.Leu250Leu
G/A 18259013 missense_variant p.Cys256Tyr
A/G 18259998 stop_retained_variant p.Ter584Ter
G/T 18259999 missense_variant p.Asp585Tyr
C/T 18260003 missense_variant p.Thr586Ile
T/C 18260006 missense_variant p.Val587Ala
C/A 18260058 stop_gained p.Tyr604*
A/T 18260152 missense_variant p.Ile636Phe
T/C 18260154 synonymous_variant p.Ile636Ile
C/A 18260161 missense_variant p.Gln639Lys
C/A 18260507 missense_variant p.Ala754Glu
A/G 18260508 synonymous_variant p.Ala754Ala
T/C 18260517 synonymous_variant p.Asn757Asn
T/C 18260861 missense_variant p.Leu872Ser
A/T 18260904 synonymous_variant p.Pro886Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25321.1
MPVIETLGGALFGAVLQLLFDRLDSHHVFDYFRRRKLNEKLLYKLKVKLLSINNVIDDAELKQFTNSYVKAWLDEVKDAVFDAEDLLDEIDYEFCKYKLKAESHTRSRKVWKFFKPSSKSFFDKKIESRMEQVLEQIEFLSSQKGDLGLEYVSCVGVGPESVSKVTQKLPSTSLVVESVIYGREDEKEMILNWLSSDTDNHSQPAQGRSPEVVGELYFDELLSRFGVDEEKKTLVKTRHLSLVTNQDQYSDGFRSLYDAKGLRTIMPTSGRINIDYYWDCKMSVDELFSKFKFLRVLSLSWCRGLKEVPGLVGDLKHLRSLDLSGTLIEKVPDSTCSLYNLQILKLNSCFNLKVLPSNLHQLTNLRRLEVMKTNVIKMPVHLGKLNNLQVLMSSFRVGESSEFTIQQLGDLSLRGGLTIEDLQNILNPLDAVAADLKSKRNLVELTLKWNNSWNLADLIKETEVLENLQPSKHLEKLSIWNYGGTQFPSWLANTSLSSLVSLSLENCNFCTRLPPLGLFPYLKDLSISGLGEVVSINADFFGSTSSSFSSLETLKFSFMYEWENWECQAVTVTDAFPRLQHLSIRHCPKLKGNLPEKLLQLRKLLICECKELVASAPVAQEIFELDLQNCGKLQFDYHPTALRRLTVIGDSSMQLSLDFLCKSKTNIPVSYYDFLETLDINDGCDSLMNISLDCFPKLLRLCLKYCHNLHTISQGRIHNHLKDLQITGCPQFQSFPDEGLSAPRLESFAMKRLGKLKSLPQHMHVLLPSLTSLLIHDCPQMKILSDGGLPSNLENMNISNCSRLVASLKGPLGANTSLQTLSVQEVDVESFPSEGFLPISLTCLIIRDCPHLKTLNYKGLCNPSSLKKLTLFDCPNIRCLPEEGLPKSISTLRILGNCPLLKESSQKPQGQD*


CDS Sequence:
>Vu_25321.1
ATGCCAGTGATAGAAACACTTGGTGGTGCTCTCTTTGGTGCTGTCCTTCAGCTGCTGTTTGACAGGCTGGATTCTCATCATGTTTTTGATTACTTTCGTCGAAGAAAGCTCAATGAGAAGCTACTGTACAAGTTGAAGGTGAAGCTGTTGTCCATCAATAATGTGATCGATGATGCAGAACTAAAGCAGTTCACTAATTCTTATGTGAAAGCATGGCTTGATGAGGTCAAAGATGCTGTGTTTGATGCAGAGGATCTGCTGGATGAAATAGACTATGAATTTTGCAAATACAAGTTGAAAGCTGAATCCCACACTCGCTCTAGAAAGGTATGGAAATTCTTCAAGCCTTCTTCCAAAAGTTTCTTTGACAAGAAAATTGAATCAAGGATGGAGCAAGTCCTTGAGCAAATAGAATTTCTTTCAAGCCAAAAGGGTGATCTAGGTTTGGAATATGTTAGTTGTGTTGGTGTTGGACCAGAGTCGGTTAGTAAAGTGACACAGAAACTGCCATCAACGTCTTTGGTGGTTGAAAGTGTTATTTATGGCAGAGAGGATGAAAAAGAAATGATTCTTAATTGGCTTAGTTCTGACACTGACAATCATAGCCAGCCTGCACAAGGTAGGAGTCCAGAAGTAGTTGGTGAGCTGTATTTCGATGAACTATTATCAAGGTTTGGAGTTGATGAAGAAAAGAAGACACTAGTAAAAACCCGTCACTTGTCGTTGGTAACAAATCAAGATCAATATTCTGATGGGTTTAGGAGTTTGTATGATGCTAAAGGGCTACGTACAATTATGCCAACAAGTGGAAGAATAAATATTGATTATTATTGGGATTGCAAGATGTCGGTGGATGAGTTATTCTCCAAGTTTAAGTTCTTACGCGTCTTGTCTCTGTCTTGGTGTCGTGGCCTTAAAGAGGTTCCTGGTTTAGTAGGTGATCTTAAGCATCTGCGTTCACTTGACCTTTCAGGCACCCTTATAGAAAAGGTCCCCGATTCAACATGCTCACTCTATAACTTGCAAATACTGAAGCTGAACTCTTGTTTCAATTTGAAGGTGCTGCCCTCTAATTTGCATCAACTCACCAATTTGCGTCGCCTTGAAGTTATGAAAACTAATGTGATAAAGATGCCAGTGCATTTAGGAAAGCTGAACAATCTTCAAGTGTTGATGAGTTCTTTTCGGGTTGGTGAAAGTAGTGAGTTCACTATTCAACAGTTAGGAGACCTCAGTCTACGTGGAGGGCTAACAATTGAGGATCTGCAGAATATTTTGAATCCCCTGGATGCAGTGGCAGCTGATTTGAAAAGTAAAAGAAATCTTGTTGAGCTAACGTTAAAATGGAATAATAGCTGGAACCTTGCGGATTTAATAAAAGAAACAGAAGTCCTTGAGAATTTGCAACCTTCCAAACATTTGGAGAAGTTGTCTATTTGGAACTACGGCGGTACACAATTCCCAAGTTGGTTAGCCAATACTTCATTGTCGTCTCTGGTGTCCTTAAGCTTAGAAAACTGTAATTTCTGCACACGTTTGCCTCCTCTTGGTCTTTTTCCATATCTCAAGGACCTTAGTATTAGTGGGTTGGGTGAGGTTGTGAGCATTAATGCTGATTTTTTTGGGAGTACATCTTCTTCATTTTCATCCTTGGAAACATTGAAGTTCTCGTTTATGTATGAATGGGAAAATTGGGAATGTCAAGCTGTGACAGTGACAGATGCTTTTCCACGTCTTCAACATCTTTCTATAAGACACTGTCCCAAGCTGAAAGGGAACCTACCAGAGAAACTTCTTCAGCTGAGGAAGCTACTTATATGTGAGTGCAAAGAACTTGTAGCTTCTGCTCCTGTGGCCCAAGAAATTTTTGAATTAGACCTACAAAACTGTGGAAAGCTGCAGTTTGATTATCATCCAACTGCTTTGAGAAGGCTAACGGTTATCGGAGACAGCAGCATGCAGTTGTCTCTTGATTTCTTATGCAAATCAAAAACAAATATTCCCGTGAGCTATTATGATTTTCTTGAAACACTGGACATCAATGATGGTTGTGACTCTCTTATGAACATTTCCCTGGACTGTTTCCCAAAACTGCTTCGGCTTTGCCTCAAGTATTGTCATAATTTACACACTATTTCACAGGGGCGCATTCATAATCATCTCAAGGATCTGCAAATTACTGGGTGCCCTCAATTCCAATCATTTCCTGATGAAGGATTATCAGCACCCAGGTTAGAGAGCTTTGCCATGAAAAGATTGGGCAAACTGAAATCATTGCCTCAACACATGCATGTTCTCCTTCCATCTCTGACTAGTCTGTTGATACATGATTGTCCACAAATGAAGATTCTCTCTGATGGAGGCTTGCCATCAAATCTGGAAAATATGAATATCTCAAATTGCTCCAGACTTGTTGCCTCACTGAAAGGGCCATTGGGAGCAAACACCTCTCTGCAAACCTTGTCTGTTCAAGAAGTGGATGTGGAGTCTTTTCCCAGTGAAGGGTTTTTGCCAATCTCTCTTACTTGTCTAATAATCCGTGATTGCCCTCATCTTAAAACACTAAACTACAAGGGTCTCTGCAATCCCTCCTCTCTTAAGAAATTGACACTCTTTGATTGCCCCAACATTCGATGCTTACCTGAAGAGGGTCTGCCCAAATCCATTTCAACTCTCCGGATTTTGGGCAATTGCCCTCTGCTCAAAGAGAGTTCCCAGAAACCACAAGGCCAAGACTAA


Promoter Sequence:
>Vu_25321::LG6:18255355-18257355(+)
ACTTCTTCCCATACTTTTCGCTAACTCCACACTAACAACCATCACTCTTTTCCATGTACCCCATTATCTTCTTTTCTCACCACAGAAACAAAGCCCCAACACCCATCAACACTCTTCTCCTTCAATCTTTCCTATCATCTCATCTCTATTTTTTTTTCTTTTAACTACTTCACTCTACTCAAAAAATTCCAACCATCATAACCCCAACTCTATTTTAACCTTCCAATTCCCACAGTCAACCTTGCTCAATACTCTTATCTTCTCTGCATTCTCCGTCGTGGGACCTACATCCAAAATATATATTCAAATAAAGAGCCTCTGCATGCAAGACCTCCCTTGGCTTATTACTAAATACCAAGAATACACCACACTCAACTCACTCCTATATCATCTTCCAACCAACCGTCATTCACTTTATTGTTCACCCAACTCTCAACCCGGAAACCCTTCATCCTCTTTTCCTCCTACCACTCAAACCCGAGAACAACCCATCCTTCCTCTACTTCTTCTCTTCTTTCTTCTGGTCTACGTACAAAACTCTATCTTTTGTTGCCAAACCAACTCTTGCATGCTCACTTAAATGACCTCACCCAATACCCAAACATTGTTAATTGAGTCACCCACAACTACCACTATAATACTTCTCTCTTGTGCAATCACTATATGTGGTTGGACGGATGTCAGCATCCGTGGACCCTCAATTCTTAAACGGATGTCAACATCCATGGACGGATATCGACATCCGTTTGTCCTTCAATGGATGTCGATATTCGTCCACGGGTCTTGTCATCCGTTTAAGAATCTAATGCATATTCACATCCGTTTAAATATTACCGTGAAGGACAAAAGAGGAATGGAGAGGTGTAGTAAGCCGTATGTGGTAGTGGAGAGAGTAACTCTTTTTTTTTTCGGGTCGAGTTGCAGGTAAACAATATCTGTGCTCGACCCAACCCGTTGCCATGTTGACAAAATTTAAGATTCCACAAATCTAAGCATTGACATAACAGAATCAATATCGGTGTAGATAGTCACATAAGGCATTCATACAAAAATTTCTTGAAATGGTTATTGTCAATTAAACTATTTTGTTTAAACATTCTTTTCTCATTATTTAGTATACATTATTTATCCAAAATAAATTCACTGGACATGTTAAATATGCGATTTTTAACCTTCAAGTATGTGGATGAGGACGAGACACACAATTGAAAAAAATAAACATTACATGTTCGAATAATAACCACAAATTTTATTTGAATATTGTTCTTACGGGCTACCTTGGTGTTGTGACATAGATGAACTTTTATTAATACCTTCATTATAGACAAATGCCTTATCCTGAGGGTTAGTCGAATTGGATTAAGTATTTGATGTGGAGACTTACGAAAATAGTGGGTTAGAACGAATGGGCTATCTAGATGTTCATAGGTATATTGAGCATAGGCTTAGTTTGATTTGTGTTAGTTTGGGAGGAAACATGGGTTATGGTGTTGTGTTATATAGGGAAAAAAATGGACGTTGTGACTTTGTGGTAGTAAGTGGGCTAGTGGGCCGTGGTGTGGTGGGTTGGTGTGTGTTTAGATTGAGAGTATGGAATGAGAAATGGCATTATAGTTTACTTATGTTAGTATGGGGTGCAGGGAGAAAACACGTATAGAGTTTTTTTATTTTTTCTACGTTGTCATGGTTGAAAAAGATGCAGGTCTTGGGTTAATTTATTGATTTGGTTACCAACCGAAGTTGACTAAATGCCCTAAAGTTTGAAGATATTTTATTACAGCGAATCAAGCTAGAAAAGCAATTTTTATGTGCTCCAAATTGTGGCAGCAAACCTTGTATTGAAAGCAAATCCATCTCCAACAAAAGACAATCATTACCTTTTGTTAATGTTATTTCTGTTCTGTCTGCATTCATGCTTAGCCACTCATTCACATAACTAAGCTGCACTTCCAATTCAAAATCCTTTCTTCTCTTTGATTCGGTCACTTCCTTTCCAACCA


Gene Sequence:
>Vu_25321(+)
ATGCCAGTGATAGAAACACTTGGTGGTGCTCTCTTTGGTGCTGTCCTTCAGCTGCTGTTTGACAGGCTGGATTCTCATCATGTTTTTGATTACTTTCGTCGAAGAAAGCTCAATGAGAAGCTACTGTACAAGTTGAAGGTGAAGCTGTTGTCCATCAATAATGTGATCGATGATGCAGAACTAAAGCAGTTCACTAATTCTTATGTGAAAGCATGGCTTGATGAGGTCAAAGATGCTGTGTTTGATGCAGAGGATCTGCTGGATGAAATAGACTATGAATTTTGCAAATACAAGTTGAAAGCTGAATCCCACACTCGCTCTAGAAAGGTATGGAAATTCTTCAAGCCTTCTTCCAAAAGTTTCTTTGACAAGAAAATTGAATCAAGGATGGAGCAAGTCCTTGAGCAAATAGAATTTCTTTCAAGCCAAAAGGGTGATCTAGGTTTGGAATATGTTAGTTGTGTTGGTGTTGGACCAGAGTCGGTTAGTAAAGTGACACAGAAACTGCCATCAACGTCTTTGGTGGTTGAAAGTGTTATTTATGGCAGAGAGGATGAAAAAGAAATGATTCTTAATTGGCTTAGTTCTGACACTGACAATCATAGCCAGCCTGCAGTACTTTCTATTGTAGCTATGGGTGGGATGGGTAAGACTACACTTGCCCAACATGTCTATAACGATCCAAGGATTGAGGAGGCTAAATTTGACCTCAAAGCCTGGGTCTGTGTTTCGGATGAATACGATGCTTTCAAGGTAGCCAGAGAAATTCTTCAGGCAATCCATAACTCAATTGATGATAGCAGAAACCTAGAAATGGTTCAGGTACGATTGAAAGAAAAATTGACAGGAAAGAAGTTTCTCCTCGTTCTGGATGATGTTTGGAACGAAGATCGAGACCGATGGAAACCACTGCAAACTCCTCTTAAATATGGGGCCAAGGGAAGTAAAATTCTTGTCACAACACGCAGCAGCAAAGTTGCTACTACCGTGCAGTCACATAAAGTACACGAACTAAAGCAGTTAGAAGAAGATCATAGTTGGCAAGTTTTTGCTAAACATGCATTTCAAGATAATAATCATCATTTGAATGTTGAAGCGGAGAAAATTGGTAAAAAGATAGTTGAAAAGTGCAAAGGATTGCCCCTGGCCCTGGAGACAGTTGGATGTCTATTACACACAAAGTCATCTGTTTCAGAATGGGACAGTGTATTGATAAGCAAAATATGGGACTTACCCAGAGAAGATAGTAAAATCATCCCTGCTTTATTGTTGAGCTATTATCATCTTCCTTCGCATCTCAAGAGATGTTTTGCTTATTGTGCTTTATTCCCCAAAGATCAGGAGTTTCACAAAGAGAGTTTAATTTTGTTATGGATGGCTGAAAATTTTCTACAATGTTCTCAGCAAGGTAGGAGTCCAGAAGTAGTTGGTGAGCTGTATTTCGATGAACTATTATCAAGGTCCTTCTTTCAAAAATCAATTCAAGACAACAAAACATGCTTTGTAATGCACGACCTTCTCAACGATTTGGCAAAATATGTTTGTGGGGACATATGTTTTAGGTTTGGAGTTGATGAAGAAAAGAAGACACTAGTAAAAACCCGTCACTTGTCGTTGGTAACAAATCAAGATCAATATTCTGATGGGTTTAGGAGTTTGTATGATGCTAAAGGGCTACGTACAATTATGCCAACAAGTGGAAGAATAAATATTGATTATTATTGGGATTGCAAGATGTCGGTGGATGAGTTATTCTCCAAGTTTAAGTTCTTACGCGTCTTGTCTCTGTCTTGGTGTCGTGGCCTTAAAGAGGTTCCTGGTTTAGTAGGTGATCTTAAGCATCTGCGTTCACTTGACCTTTCAGGCACCCTTATAGAAAAGGTCCCCGATTCAACATGCTCACTCTATAACTTGCAAATACTGAAGCTGAACTCTTGTTTCAATTTGAAGGTGCTGCCCTCTAATTTGCATCAACTCACCAATTTGCGTCGCCTTGAAGTTATGAAAACTAATGTGATAAAGATGCCAGTGCATTTAGGAAAGCTGAACAATCTTCAAGTGTTGATGAGTTCTTTTCGGGTTGGTGAAAGTAGTGAGTTCACTATTCAACAGTTAGGAGACCTCAGTCTACGTGGAGGGCTAACAATTGAGGATCTGCAGAATATTTTGAATCCCCTGGATGCAGTGGCAGCTGATTTGAAAAGTAAAAGAAATCTTGTTGAGCTAACGTTAAAATGGAATAATAGCTGGAACCTTGCGGATTTAATAAAAGAAACAGAAGTCCTTGAGAATTTGCAACCTTCCAAACATTTGGAGAAGTTGTCTATTTGGAACTACGGCGGTACACAATTCCCAAGTTGGTTAGCCAATACTTCATTGTCGTCTCTGGTGTCCTTAAGCTTAGAAAACTGTAATTTCTGCACACGTTTGCCTCCTCTTGGTCTTTTTCCATATCTCAAGGACCTTAGTATTAGTGGGTTGGGTGAGGTTGTGAGCATTAATGCTGATTTTTTTGGGAGTACATCTTCTTCATTTTCATCCTTGGAAACATTGAAGTTCTCGTTTATGTATGAATGGGAAAATTGGGAATGTCAAGCTGTGACAGTGACAGATGCTTTTCCACGTCTTCAACATCTTTCTATAAGACACTGTCCCAAGCTGAAAGGGAACCTACCAGAGAAACTTCTTCAGCTGAGGAAGCTACTTATATGTGAGTGCAAAGAACTTGTAGCTTCTGCTCCTGTGGCCCAAGAAATTTTTGAATTAGACCTACAAAACTGTGGAAAGCTGCAGTTTGATTATCATCCAACTGCTTTGAGAAGGCTAACGGTTATCGGAGACAGCAGCATGCAGTTGTCTCTTGATTTCTTATGCAAATCAAAAACAAATATTCCCGTGAGCTATTATGATTTTCTTGAAACACTGGACATCAATGATGGTTGTGACTCTCTTATGAACATTTCCCTGGACTGTTTCCCAAAACTGCTTCGGCTTTGCCTCAAGTATTGTCATAATTTACACACTATTTCACAGGGGCGCATTCATAATCATCTCAAGGATCTGCAAATTACTGGGTGCCCTCAATTCCAATCATTTCCTGATGAAGGATTATCAGCACCCAGGTTAGAGAGCTTTGCCATGAAAAGATTGGGCAAACTGAAATCATTGCCTCAACACATGCATGTTCTCCTTCCATCTCTGACTAGTCTGTTGATACATGATTGTCCACAAATGAAGATTCTCTCTGATGGAGGCTTGCCATCAAATCTGGAAAATATGAATATCTCAAATTGCTCCAGACTTGTTGCCTCACTGAAAGGGCCATTGGGAGCAAACACCTCTCTGCAAACCTTGTCTGTTCAAGAAGTGGATGTGGAGTCTTTTCCCAGTGAAGGGTTTTTGCCAATCTCTCTTACTTGTCTAATAATCCGTGATTGCCCTCATCTTAAAACACTAAACTACAAGGGTCTCTGCAATCCCTCCTCTCTTAAGAAATTGACACTCTTTGATTGCCCCAACATTCGATGCTTACCTGAAGAGGGTCTGCCCAAATCCATTTCAACTCTCCGGATTTTGGGCAATTGCCCTCTGCTCAAAGAGAGTTCCCAGAAACCACAAGGCCAAGACTAA