Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25317 LG6 18198652 18202986 "PREDICTED: protein kinase 2A, chloroplastic-like "
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   plant organ morphogenesis, protein phosphorylation, phosphorylation, protein phosphorylation, shoot system development, plant organ morphogenesis, shoot system development, protein phosphorylation, negative regulation of gene expression, pattern specification process, root development, phosphorylation, root development
Cellular Component   is active in   plasma membrane
Cellular Component   located in   nucleus
Molecular Function   enables   transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, ATP binding, ATP binding, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity
SNP Position Effect Amino acid change
G/T 18198806 missense_variant p.Ser621Tyr
C/A 18198815 missense_variant p.Gly618Val
T/A 18198835 missense_variant p.Glu611Asp
T/A 18198919 missense_variant p.Arg583Ser
A/C 18199199 downstream_gene_variant
G/T 18199581 downstream_gene_variant
T/A 18200231 downstream_gene_variant
A/G 18201315 downstream_gene_variant
A/T 18201503 downstream_gene_variant
G/A 18201516 downstream_gene_variant
G/A 18201616 synonymous_variant p.Asn152Asn
A/T 18201983 downstream_gene_variant
T/A 18201986 downstream_gene_variant
C/A 18202030 downstream_gene_variant
G/T 18202046 downstream_gene_variant
C/T 18202232 downstream_gene_variant
G/C 18202568 downstream_gene_variant
A/G 18202571 downstream_gene_variant
T/A 18202576 downstream_gene_variant
G/T 18202577 downstream_gene_variant
T/A 18202767 downstream_gene_variant
G/T 18202909 synonymous_variant p.Val26Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25317.1
MSEESLSIVVIHYASRDFNTRAIKVVMQGFSLGRGDKLTLLVILRQAYSPTRLPFIAPAKLRGLFETDHKIVEEEVAKKKEELLNNASLREISELCEADMIQFRIEVLQGKLPEVAVNAAIRLEATSVIIDRQMKKYKKEFKQSLFCSLLITKRDNSVQHLRGPRETHLCDGSNGNARCVRCPNSKSPPRIRQVTNSCSNTSSSFPTLAKGGCPQPQLYSQIKQIPENRVQDMERGYCLLSITDTQKTNHTEEYNIETPAEHSNNPEAYQIVEQFKNSVCSVCKNRRPKFEVMKEFTYAELHEATQGFSPKNYLSEGGFGSVYKGRLQGGLRIAVKQHKCASLQGEKEFKSEVNALSRAIHENVVMLRGSCSEGNNRLLVYEFICNGSLDQHLSQHSRRPLTWKERIKVAIGAARGLLYLHQNNIIHRDMRPSNILVTHDYEAMLGDFGLARTEQMDSLYSTDVVGTIGYLAPEYAESGKLSTKTDVYAFGVVLLQLITGMRTADKRLGEKSLVGWARPLLKERNYPDLLDERMLDNHDCHQLFWMIRLAEKCLSRDSQRRLSMDTVVNALTHILEGNTCSVVLRDCSPAQSDSSYDMSDLLIPDTSQEIEGEDTSNYAGYASMCFRPPPSPPLGSTSSSTSSVFTGLSESPIDDLSNNKNKGIRANEQGGIL*


CDS Sequence:
>Vu_25317.1
ATGTCTGAAGAGTCACTGAGTATTGTGGTGATCCACTATGCATCAAGAGACTTCAACACAAGGGCCATAAAAGTGGTCATGCAGGGATTTTCACTCGGTCGTGGAGACAAGCTTACACTTCTTGTAATTCTTCGCCAAGCTTATAGTCCCACTAGGCTTCCCTTCATTGCACCTGCAAAATTGCGTGGATTATTTGAGACTGATCACAAAATTGTTGAGGAAGAAGTTGCTAAGAAGAAAGAAGAGCTTCTTAATAATGCAAGCTTAAGGGAAATTTCTGAGTTGTGTGAAGCAGACATGATTCAATTCCGGATAGAAGTTCTGCAGGGTAAATTACCAGAGGTTGCGGTAAATGCTGCCATCCGTCTGGAGGCAACATCAGTGATAATTGATAGACAGATGAAGAAATATAAGAAGGAATTCAAGCAGAGTCTCTTTTGTTCTTTGCTAATAACGAAACGTGACAACTCTGTGCAACACTTGAGAGGGCCAAGGGAAACACATCTGTGTGATGGAAGCAATGGAAATGCAAGATGTGTTAGATGTCCTAATTCTAAATCTCCTCCAAGAATACGGCAAGTGACAAATTCCTGCTCCAATACCAGCTCTTCCTTTCCTACTCTTGCAAAGGGTGGTTGCCCCCAACCCCAACTTTATTCTCAAATAAAACAAATCCCTGAAAATAGAGTACAAGACATGGAAAGAGGGTATTGCCTACTATCCATTACTGATACTCAAAAGACTAATCATACTGAAGAGTATAACATAGAAACACCAGCAGAACATAGCAACAACCCTGAAGCATATCAAATAGTTGAACAATTCAAAAATTCTGTTTGCTCAGTGTGCAAGAACAGAAGACCAAAATTTGAAGTGATGAAAGAATTCACATACGCAGAGCTGCATGAAGCTACACAAGGTTTTTCACCAAAAAACTATTTGTCCGAAGGAGGATTTGGTTCTGTCTACAAAGGAAGGCTGCAAGGAGGATTAAGGATTGCTGTTAAGCAACATAAGTGTGCAAGCCTCCAAGGAGAGAAGGAATTCAAATCTGAGGTCAATGCACTCAGCAGAGCTATACATGAGAATGTGGTCATGCTGCGTGGATCTTGTTCAGAAGGAAATAACAGGCTTCTGGTGTATGAATTTATTTGCAATGGCTCTCTTGACCAACATTTATCACAACACTCACGTAGGCCACTTACTTGGAAAGAAAGGATCAAAGTAGCTATTGGAGCTGCAAGAGGCTTGTTGTACTTGCATCAGAACAATATAATACACCGAGATATGAGGCCTAGCAACATCCTTGTTACACATGATTATGAAGCAATGCTTGGAGATTTTGGTCTGGCTAGAACTGAACAAATGGACTCCTTATACTCCACAGATGTTGTTGGAACTATAGGGTATTTGGCACCAGAATATGCAGAGTCAGGAAAACTGTCAACCAAGACAGATGTGTATGCTTTCGGTGTGGTTCTTCTTCAGCTAATAACTGGAATGAGGACTGCAGACAAACGTCTTGGCGAAAAAAGTCTTGTGGGATGGGCTAGGCCACTACTCAAAGAAAGGAACTATCCAGATCTACTTGATGAAAGGATGTTGGATAATCACGATTGCCATCAGCTTTTCTGGATGATTCGTCTGGCAGAAAAATGCCTCAGCAGGGATTCTCAGAGGCGATTATCAATGGATACAGTGGTGAATGCCTTAACTCATATACTGGAAGGCAACACATGCAGTGTTGTTCTAAGAGACTGCTCTCCAGCACAATCAGATTCATCATATGACATGTCAGACTTGCTTATCCCAGATACCTCACAGGAGATAGAAGGTGAAGATACAAGCAACTATGCAGGATATGCTTCTATGTGCTTTAGACCACCACCATCTCCTCCACTAGGAAGCACTTCCTCAAGTACATCAAGCGTGTTCACAGGGCTGAGTGAATCTCCTATAGATGATTTGTCCAATAATAAGAATAAGGGTATAAGGGCAAATGAACAAGGTGGGATACTCTAA


Promoter Sequence:
>Vu_25317::LG6:18202986-18204986(-)
AAAATAATCCAATTTGATTAACCAAACTAGATTTTCTATCGGGAGGCTTTTACTCCCTGCATTCCCACAATTTCTTTGCACATCTCCAAAATTTTCGAAATGACTATTTTACCTTCTAAAAACTTGACTTCTGGAATATATGTTTTGGAAATTTTTTGGAAAACAAGACTTTTGAAATAAGATTTTTGGAACAAAATTTCCGTAATCAGATTTCTGAAAAAGAACTTTTGAAATAAAAATTTTAAAATTCATTAAATGCATTTTGAAATAGGTGTGTTTAAATAGGACTTTTGGAAAAAAATTTCGAAACACATATAATGTATTTTGAAACGAGTTTTCCAAAACATCTCTGCATGAAATTGTTCAGAAAAGAATTTTCTGAAACACATGAAATATATTCCAGAAAAAAACATTCGAAACAAGTTATTTTCTTTAATTTCTCTCTTCTTTTATAATGTTGTCTCCTTTCTTCTTCCATTGCAACAACAGTTGTGACAGAAGCAACAATAACAACAACAGTAAAAGTGTTTATAAAAGATTATTTTCTAAACATATATAAGAAGAATTTAAGAAACAAGATCAAAGATAAAACCATGTCTCCTTTAATCTTATAATGTTTTATGAAGGAAAGAACTTAAAAAACATGAAGATTATGAACACAATTAAATAAAATTTAAAAAATTAAGTATATTGTAATTTTATTTTAATTTTACATAATATTAAAATTTACTAGGTGAGTCAATTTGTGTTAGTTGGACCAGTAGGCTTAGTTAGGAGAAAGTGACGTATGAAATTTATGTTTTTTTGTTTTTTATGTGTTTTGGACATTGGAAAATAATAAAGGCAAGAGGAAGCTAAGAAATTAGGAAAACAAAGGATAAAGGACTAATGATGCTAAGAAAATGACATATCACTCTTTAGATGTTCTAGTTGCCTGGATTTTACATGTTTGGTAGAACAACTTCTTTTTTAAAAAACAATTACACTTATAACACTCCTACTTTTTTTTCATCATTAGAATTATGTCTCTTAAGGAGTACATGTGTAATGTAATGTAATCTAAGAAGGAGATACACATGTAACATGTTTAAAATTTGAAGGGGTTTTGTGTAATCTAAAAAGCAGATATAATGTACTGCTTTTCGTGTAGAATTCTAAAAAATGTTAGTTTGATTTACTCTCGATATATAAAATGTTAAAAAATTAAATAAAAGATAGAAACGATTATATATTATATTAAAAGTGATATTAACTATTTAATGTTATTAGACTTTTTTTTTTCTTTTTAGGTACTTAAAATTGACTCTATGTGTTGATGGTAACAAACTTATTGTTAAGTTGGTCTCTTTAAGAATTATTTTTTTTGAATATTTTAACAACAACTATAAAAGAACATATAAATACCACACACATAATACAATATATATGTCACTCTAATAAAATATGTATAGAATAAAAGATAGAGAATAAAGGAGAAAGAATCATGAGAAAACAAAAATGTCACTCTGATAAACAGAGATAGAAACAATACTGTTGTAAAAGTGTGGCAAAACAATATAAATATAATTTTTATGAAAAATACTCATTAAAATTGTTGATATAAGTCCTCTTTCTCCACGAAACTTCAAAAGATTGATGAGCATTCCAATGCGATATGCACTCCTGGATTCAGTAACATTCAAAGTGAGCATTACTGGTCACTGCCATTGTTCTGATTTTGAGAGTTCATTCATATTTGTTCTCTTCCTAAATCCACATTTTGTCCTTTGTTTCTGGCCTTTCCAACATACCTTATTCTTGAATCTCCTCATGTTCCGTACTCTTCTCTCACTATAGTTCATATTCCATTGAGTCTTCATAGCTGTCCAATTCTTTAGCAACTGGTTGCTCTTGGATTCTAATTGTATGACATCAATTTCCATGAAAAACAGACAAAGTAACAAATTGCAACATATTGAACTGAAAGTTGAGGAGAACTGAAACAAGAGTGTACGTAGATG


Gene Sequence:
>Vu_25317(-)
ATGTCTGAAGAGTCACTGAGTATTGTGGTGATCCACTATGCATCAAGAGACTTCAACACAAGGGCCATAAAAGTGGTCATGCAGGGATTTTCACTCGGTCGTGGAGACAAGCTTACACTTCTTGTAATTCTTCGCCAAGCTTATAGTCCCACTAGGCTTCCCTTCATTGCACCTGCAAAATTGCGTAAGTGTCACATTCTTTGTTATTTCCCTTCTTCAAAATTCAATTTCTTGTTGTGTATTCATTTAAGAAACAATCCATGACTTTTTGTTACATGGATTTGAGCTTGAATTCTGACAAGTTCTTTAATTATATTGGCTACCCCTTTTCTTATTAATAACTTTTTTCTTCACATAGTTTAGTCTTGAGAGATAATTAATATTATAGATATAGTACTTTGGTGTTTCTCATAAATTTCTTATGTATTGGCTTTCTTGTCTTCAGGTGGATTATTTGAGACTGATCACAAAATTGTTGAGGAAGAAGTTGCTAAGAAGAAAGAAGAGCTTCTTAATAATGCAAGCTTAAGGGAAATTTCTGAGTTGTGTGAAGCAGACATGGTTAGATTATAAAACTTCTTGTCTTTATAACAGCAATCCATGTAGCTGATAAAATCCATCATCATATTGTATATGAATTATGGAATAGGTTCCCTGAAAATGATGTCATGGTCAATTTTTTATATCACAGGAAATTCAGTATAAATTGTACTAGATTTGTTATTTAATAATTTGGTTGTCTAGACAAAGATATGTTGTCTAATAGAATCCATTTATGAACGAAACTACTCAGATTCAATTCCGGATAGAAGTTCTGCAGGGTAAATTACCAGAGGTTGCGGTAAATGCTGCCATCCGTCTGGAGGCAACATCAGTGATAATTGATAGGTTAGTCATATTATTTTAATTTTCCATTTTCTATTTTCAATTTTCTTTATATCAAAATCTAAGAATATGGAGGAGAAAGGCCTCTTGTTCTTACCCTTCTTACATAAATAAAAATTAAACTTACTACAAAAGGAGTTCATGGTTGTATGTGAAAGTATTTGTCGAGAGAAACTATCCAGCTCTTCATCATCTTGTTACTTTCAGAAGGAAAGTGTTTCTTGAGTTACATAATTTGTAAAGGCTATTTATTTTATGCTGCTAACATCATAAGCATTGAAATTGACAGCTCAAGTTTTTGTATAATTGTCTTTGTGGCATAAATGTGATCATGTTTTATTGCTTCATACAAATTGTAATGTCACAAAACATAAAAGCATGTTCAAGCTTCCTTGCTGTGTTTGAATTGGTTGATGTGCAGACAGATGAAGAAATATAAGAAGGAATTCAAGCAGAGTCTCTTTTGTTCTTTGCTAATAACGAAACGTGACAACTCTGTGCAACACTTGAGAGGGCCAAGGGAAACACATCTGTGTGATGGAAGCAATGGAAATGCAAGATGTGTTAGATGTAAGGAACTTACTCCATATAGTTCATCTTAGAATCCTTGATTTCCAATTTGTGAATTAATTGTGTTCTACTATAGTCATCATCACTGAACCATATTTTAATGAAATCATGATATATATAGAACACGAGAGTTAAAGCATCCAGTCATAACATACATTTATCAATTCCAAGATCAAAAATAAAAGGAGTTTCTTCGCTTTTATTTTTTCAAATCTGTAATTTTCCAAATCTTCAAGACAGAATACTCATTTATGTAGTTGAAAACTTACAAAATACTATTTCTTTTTGAGTATGTCCACCATATTTCAATTCATTTAAGGAGAATTCAAGGATATTGAAAAGTTGATGCAATGGTGTGTGAAGCAGGTCCTAATTCTAAATCTCCTCCAAGAATACGGCAAGTGACAAATTCCTGCTCCAATACCAGCTCTTCCTTTCCTACTCTTGCAAAGGGTGGTTGCCCCCAACCCCAACTTTATTCTCAAATAAAACAAATCCCTGAAAATAGAGTACAAGACATGGAAAGAGGGTATTGCCTACTATCCATTACTGATACTCAAAAGACTAATCATACTGAAGAGTATAACATAGAAACACCAGCAGAACATAGCAACAACCCTGAAGCATATCAAATAGTTGAACAATTCAAAAATTCTGTTTGCTCAGTGTGCAAGAACAGAAGACCAAAATTTGAAGTGATGAAAGAATTCACATACGCAGAGCTGCATGAAGCTACACAAGGTTTTTCACCAAAAAACTATTTGTCCGAAGGAGGATTTGGTTCTGTCTACAAAGGAAGGCTGCAAGGAGGATTAAGGATTGCTGTTAAGCAACATAAGTGTGCAAGCCTCCAAGGAGAGAAGGAATTCAAATCTGAGGTCAATGCACTCAGCAGAGCTATACATGAGAATGTGGTCATGCTGCGTGGATCTTGTTCAGAAGGAAATAACAGGCTTCTGGTGTATGAATTTATTTGCAATGGCTCTCTTGACCAACATTTATCACGTAAGACAATTGATTTTAGAAATAGATACTACTATATGGAGAATGAAAATGAATAAATCTTTTGATATGATTATTTAAAATTGAAATGCTAACTAAGACTACAATAATGCAGAACACTCACGTAGGCCACTTACTTGGAAAGAAAGGATCAAAGTAGCTATTGGAGCTGCAAGAGGCTTGTTGTACTTGCATCAGAACAATATAATACACCGAGATATGAGGCCTAGCAACATCCTTGTTACACATGATTATGAAGCAATGGTAATAAACCATATAGCTTTAGAGAATAGTAATTACATTTGAAAATACCTTAGACTCGCCGACTTTAAGCATATATGATATTCAAACTTAGAGAACTTGTATTGATGATTCACATTTCTTGTATAGAATGTTATTATGAAACTTCTTCGTTTGAAACTTAGTTATGAACCAAGTTTTATGACTAGTATATGTGAGCATCACCTATAATGAACTTGGAAAATATGATAAATGGTCAAGCTATATTTGGATCCTTCCATGAATTGTTTAATATATTTATTGCTTCTGCAACATCGAGTAACTGGAACTTTTACACATTTATCAGCTTGGAGATTTTGGTCTGGCTAGAACTGAACAAATGGACTCCTTATACTCCACAGATGTTGTTGGAACTATAGGGTATTTGGCACCAGAATATGCAGAGTCAGGAAAACTGTCAACCAAGACAGATGTGTATGCTTTCGGTGTGGTTCTTCTTCAGCTAATAACTGGAATGAGGACTGCAGACAAACGTCTTGGCGAAAAAAGTCTTGTGGGATGGGTAACAATTTAAGTAAAACAGTACTTTAAAATTTTAATAAATATATCCTATTTTATATATGAGTTTTCTTTTATGACAAAACTAGGTAACCTTATTGTTACAAATAATAAAAACAGTATCTCTGATTCCCAAGACATTTGGCAAACCTTGTTAAATCCTGTCTTCGTATGTGTGCATGTCTATTATGTTCTTCTTTATAACTTAGTTTCCATTTCTGACTGTAATACTAGAATTGATGTTTTCAAACTCAAGGTAAAATAAATTTTTCCATGCCATGTTACAATTTTACTTGGCATTTCCTTACATCATTCCAATGTATGTGTTCCTTTCAATCACTAACCCTCTTGCTTTCTTTCAGGCTAGGCCACTACTCAAAGAAAGGAACTATCCAGATCTACTTGATGAAAGGATGTTGGATAATCACGATTGCCATCAGCTTTTCTGGATGATTCGTCTGGCAGAAAAATGCCTCAGCAGGGATTCTCAGAGGCGATTATCAATGGATACAGTAAGTCTAAACCAGTGAGTTTCTCTAAGGATATGATGTTATTGGACACTCTATTGACACTTTGAATACTCTTGGAGATATTTTATATTCTTCTATTGTTCCTTTTTAAACATTTAAGCCGACATAGATAAAATATCTTACAGAAAGAAAGAAGGAAATTTTAAAATAAAGTCTTATAATTAGAGGAGAGATTATGTCAAGTGTATTCTCTATACCGACTTGTTGTATATATATGTGGTTGCAGGTGGTGAATGCCTTAACTCATATACTGGAAGGCAACACATGCAGTGTTGTTCTAAGAGACTGCTCTCCAGCACAATCAGATTCATCATATGACATGTCAGACTTGCTTATCCCAGATACCTCACAGGAGATAGAAGGTGAAGATACAAGCAACTATGCAGGATATGCTTCTATGTGCTTTAGACCACCACCATCTCCTCCACTAGGAAGCACTTCCTCAAGTACATCAAGCGTGTTCACAGGGCTGAGTGAATCTCCTATAGATGATTTGTCCAATAATAAGAATAAGGGTATAAGGGCAAATGAACAAGGTGGGATACTCTAA