Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_25243	LG6	15526096	15528234	PREDICTED: putative receptor-like protein kinase At1g80870	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, protein phosphorylation, seed development, seed development, protein phosphorylation, meristem initiation, seed development, seed development
Cellular Component	is active in	plasma membrane
Cellular Component	located in	chloroplast
Molecular Function	enables	protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
A/T	15526467	missense_variant	p.Tyr590Asn
G/A	15526557	missense_variant	p.Leu560Phe
T/A	15526775	missense_variant	p.Lys487Ile
G/A	15526930	synonymous_variant	p.Pro435Pro
G/A	15526961	missense_variant	p.Pro425Leu
G/A	15526999	synonymous_variant	p.Asn412Asn
T/A	15527144	missense_variant	p.Asp364Val
C/A	15527152	missense_variant	p.Leu361Phe
G/A	15527962	synonymous_variant	p.Phe91Phe
T/C	15527970	missense_variant	p.Thr89Ala
G/T	15527971	synonymous_variant	p.Gly88Gly
T/A	15528018	missense_variant	p.Thr73Ser
T/C	15528028	synonymous_variant	p.Leu69Leu
A/G	15528073	synonymous_variant	p.Asp54Asp
G/T	15528081	missense_variant	p.Pro52Thr
T/C	15528094	synonymous_variant	p.Arg47Arg
T/A	15528208	synonymous_variant	p.Thr9Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_25243.1

MPSRPFPPTSPTKTKALFLALTISACVVIFCSIVYFLYHLWLSLVHRAKTIPFDASAPLKLQRFSYKDLKQATNGFDTANVIGKGGSGTVFRGVLKDGKLIAIKRLDALSLQSEREFQNELQILGGLRSPFLVTLLGYCVERNKRVLVYEYMPNRSLQESLFGDEGLSLSWERRFCIILDVARAMEFLHLGCDPPVIHGDIKPSNVLLDAEWRGKISDFGLSRIKVEGEFGVDLFSQDLGRSQDLWKSQELSGNLTNLTAETPAIGTPVESVSEVDFALALQASSSSKNSRTCFNVKALNLNSLNYNANIAGESEIRSVNAKGKEISALDRDDWNGKFFPYDDEQSSIDYSKELTVNASPLVDDEKENGKQWGKDWWWRQDGSGELCSKDYVMEWIGSQICPSNPDWDHGKNNVPEKVELETSSPKDKEQDAIAPQSQVFGIGHNTTDNGIEKKESRGKKNHKKKHRKMQEWWREEHLAELSKKTNKLKNLHSKWKKGMKVPHFDLGRRFYLCRRKKFGEEGQDECDQNGEFSFRRGWKKKSTLSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGNILELVDERLKEDFNKEQASLCINLALTCLQKIPELRLDIGDIVKILKGEMDLPPLPFELSPSPPSKLYGKARRKQKITAE*

CDS Sequence:
>Vu_25243.1

ATGCCTTCAAGACCCTTTCCTCCCACAAGTCCCACCAAAACCAAGGCCCTCTTCCTAGCACTCACCATTTCAGCTTGTGTTGTTATTTTCTGCTCGATTGTTTACTTCCTCTACCATCTGTGGCTTTCTCTAGTTCACAGAGCTAAGACCATCCCCTTTGATGCAAGTGCTCCCTTGAAGCTCCAAAGATTCTCGTACAAAGATTTAAAGCAGGCCACCAATGGCTTCGATACTGCCAATGTAATTGGCAAAGGCGGCTCTGGCACTGTTTTCAGAGGCGTACTTAAAGACGGCAAGTTGATTGCCATCAAGCGTCTGGACGCATTGTCTTTGCAGTCAGAGAGAGAGTTTCAAAACGAGCTGCAGATTCTTGGAGGGTTAAGGTCACCATTCTTGGTGACTCTTTTGGGTTACTGTGTGGAAAGGAACAAAAGAGTGCTGGTGTATGAGTATATGCCCAACAGAAGCTTGCAGGAGTCCCTCTTTGGAGATGAGGGTTTGAGTTTGAGTTGGGAGAGAAGGTTCTGCATAATATTGGATGTTGCTAGAGCTATGGAGTTCTTGCACCTTGGATGTGATCCTCCGGTGATCCATGGTGATATCAAGCCAAGCAATGTTCTGCTTGATGCAGAGTGGCGCGGGAAGATCTCCGACTTTGGTTTGTCAAGGATTAAGGTGGAGGGTGAATTTGGTGTTGACTTGTTTAGCCAGGACCTAGGGAGGAGCCAGGATCTATGGAAAAGCCAAGAGCTTTCAGGTAATTTGACTAATTTGACTGCAGAAACTCCTGCTATTGGTACTCCGGTTGAGAGTGTGAGTGAAGTAGATTTTGCTCTAGCTTTGCAAGCCTCTTCTTCATCAAAAAACAGTAGGACCTGCTTTAATGTTAAAGCTTTGAATTTGAATTCTTTGAATTATAATGCCAATATTGCTGGTGAAAGTGAAATCAGGAGTGTGAATGCAAAGGGTAAAGAAATTTCAGCTTTGGATAGAGATGATTGGAATGGTAAGTTTTTTCCTTATGATGATGAGCAATCTAGCATTGATTATAGTAAGGAGTTAACAGTGAATGCTTCTCCTTTGGTGGATGATGAGAAGGAAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAGACAGGATGGAAGCGGGGAGTTATGTAGTAAAGACTATGTTATGGAGTGGATTGGGAGTCAGATTTGTCCATCAAACCCTGATTGGGATCATGGTAAGAACAATGTTCCCGAGAAAGTGGAATTGGAAACTTCAAGCCCAAAGGATAAAGAGCAAGATGCAATTGCACCCCAGTCACAGGTGTTTGGGATAGGACACAATACTACAGATAATGGGATTGAGAAAAAAGAGTCAAGGGGAAAGAAAAATCACAAAAAGAAACACAGGAAGATGCAAGAGTGGTGGAGAGAAGAGCATCTAGCTGAATTAAGCAAGAAGACAAATAAACTGAAAAATCTTCACTCTAAATGGAAGAAAGGCATGAAAGTGCCCCATTTTGATTTGGGTAGAAGGTTTTATCTTTGCAGACGTAAGAAGTTTGGAGAGGAGGGTCAGGATGAATGTGATCAAAATGGGGAGTTTAGCTTCAGAAGAGGCTGGAAGAAAAAGAGTACTCTTTCCATTGGTAGTGACATGTGGAGTGGAGATCTTTTCAGTCGCGAGCTTAGCAGCACAACTAGCATGAGAGGGACACTGTGTTATGTGGCACCAGAATATGGAGGGTGTGGATTCTTGATGGAGAAAGCTGATATTTATAGTTTTGGAGTTTTGATTCTTGTAATCGTGTCAGGTAGGAGACCGTTACATGTTCTTGCATCACCCATGAAGCTAGAGAAAGCAAACCTGATAAGCTGGTGTAGACACTTGGCTCAAGCTGGTAACATTTTAGAACTAGTGGATGAGAGATTGAAAGAAGATTTCAACAAGGAGCAAGCAAGCCTGTGTATCAATCTGGCCCTCACTTGCTTACAGAAAATTCCTGAGTTGAGGCTGGATATTGGGGATATTGTTAAGATTTTGAAGGGGGAGATGGATCTTCCACCACTTCCATTTGAGCTCTCCCCTTCTCCACCTTCCAAATTATACGGCAAAGCAAGGAGAAAACAGAAGATCACTGCAGAATAG

Promoter Sequence:
>Vu_25243::LG6:15528234-15530234(-)

CTATTTGTTGACTTAAGTATCGAAGTGTCTTTGGCAGGTATCCTCGATCGGTTGGAGTGAAGTCGAAGACAGAGTGAAAATACAATTACCCGAACTGCGTTGGAAAGGAAATTATGCAGTAGTTTACTTACTTGACCCTACACCCGAAACAGACATCATTTTCTACTCAAAACCTTAAGAAAATGGACTAATGGATCTTCACTTTTTCATTACTACTCAATAATATAGAACTTAAACTCACTTAAAATTCTAACACAATTGCAGAAGACCCTTTGGGCCTCCACTATGTGAACACCGCTCTAACATACATATTTACCTTCAATTTTGTTTGTTACATTCTTAAGGGCTTTGGATCAATAAGAAAGCGTGAGCTTGTGAGGTGTTTATCGTTCTAATGATATTGATATCCAAAAGTAGAAAGTAGAAAAAGCAGAAAGCAAAGCTTCAACGATTAAAGGTCAATCATAGGTCTGCTAGCATGCAAAGAGAAGGACGAACAAGAGTTTCTTTATTCTAAGATATTCCAACTTCTGAGATATTTCACCCCTTTTCTGTCACAACTAAACGATCAACTCGACCAAAGGTTTCATGGCTGTGCTAAAAATAAATTGAGCAAAAGTAAAGCTAGAGAATTTACTTTACCTTTATTTGTTTGACGGTATTTTTTTTTTCTGCACATCCTAATTTACTTTAACTATAAGTAACACAATTGCTTAAGATAGCAAAATCAAAAATCAGTTTCACCCTTTCGAGTAACTTTTTACCAAACCATAGACTTGACCAGAGAGCAATTTTTCTTTCCCATAACGTGATAAAGCGTTCCTGCTTGCATTTACAAGACATTTGCCAGAGTAACTTTTATTTTGATACAATAATACAGTTTTGAATAATTCGTGTTGGATAATACAGTTTTTTTCTACTCGAAATATACAAATATCAATTAAATCTGAATCTAACCACTACTTTCTACTCAAAATCTTAAAACTATAGATTAATAAATCTTTTGTTGAAAGTCTCCGTTGACTAGAGATAAGGTCAATTTATAGGTTATAAGTGAATGCAAACCTCACCTTACAAGTCGTTTTTGTGGGATTGAATTAGGCTTAAAGTCCACTCCTAACATCTTTATATAATGTTTTTACTTTCTCATTTCTATACGAGTCAAACTTGAATATTCAACCGATTTGAATAAAACTATAGTTCAAATAATCTATTACACAGAACCACGTTATCTTTATATCTATATGTCTAGCATAATATCTATCTTCAACCAGGACCCGAATAAAAAGGATTACTTAATGAAAGTTGTTCACATATGATGCCGTATTTTAGTGCGACATGGGTCCGGAGCTGCAATGTAAGGAATGATGGAAGACAAGATATGGTGGTTATCCAAGGATGTGTGTGAAGTGCGAACCTCTTCTGCTAAAATTTACTGAACAAGAAAGAATTAAAAAGAGTGGTATCTCTAGATTCTAAGCAGTGCACGTGGCCTAGTGATGGCGTATCGGACAAAATAACTGCGCATAAAATAATGTTTGATGTTTTCAAACCAATTAACATCTGTAATGCATAATAATACAAATAATGTTCATTTCCCCACACATTATCACACACTGAGTAGAATTTGCCTTCCTTTTTTTGTCTCTCCCTCGTCTTCACGTAAGTGATCCCAAGACTCTTTAGTCAAAAGCAGCTTGGGTCCCTCCCTCCCTTCCCTTTTTCTAATCCTCATTTCCCAATCGCTAATCTCATAAGTGCATAGAAACCATAGCATAAATCAAGGAAAATGATAAAAACAAAAGAGAGTTAAGAATAGTAGAAGACAGCTCCTACTCTGATGATTATCTATTTGTAAAGCGATCTGCTTTGGATACCCTTTGAAAACACAAAGAAAAGGAAATGAAAAACCAGAATGCCCATCTCCATATTACTCTTCTGTTACTTTTTCTTCTCCACTGCTTTCTGTGATCACCATTCTCTCATCCACACAACACGCC

Gene Sequence:

>Vu_25243(-)