Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25234 LG6 15463605 15465837 PREDICTED: transcription factor bHLH18-like isoform X1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 15463644 3_prime_UTR_variant
A/G 15463666 3_prime_UTR_variant
G/A 15463735 3_prime_UTR_variant
G/A 15463738 3_prime_UTR_variant
T/C,A 15463740 3_prime_UTR_variant
C/T 15463744 3_prime_UTR_variant
G/T 15463745 3_prime_UTR_variant
T/C 15463787 3_prime_UTR_variant
T/A 15464102 missense_variant p.Glu239Val
A/G,* 15464128 synonymous_variant p.Asn230Asn
T/G 15464136 missense_variant p.Met228Leu
C/T 15464168 missense_variant p.Cys217Tyr
C/T 15464187 missense_variant p.Gly211Arg
A/G 15464191 synonymous_variant p.Ser209Ser
C/G 15464259 missense_variant p.Glu187Gln
C/T 15464347 upstream_gene_variant
A/G 15464420 upstream_gene_variant
T/C 15464489 upstream_gene_variant
T/C 15464520 upstream_gene_variant
T/G 15464549 upstream_gene_variant
T/C 15464612 upstream_gene_variant
T/C 15464620 upstream_gene_variant
G/T 15464658 upstream_gene_variant
T/A 15464695 upstream_gene_variant
G/A 15464904 upstream_gene_variant
A/G 15464942 upstream_gene_variant
G/A 15465064 upstream_gene_variant
C/G 15465089 upstream_gene_variant
C/T 15465494 synonymous_variant p.Thr65Thr
T/C 15465592 missense_variant p.Asn33Asp
A/G 15465716 upstream_gene_variant
A/T 15465726 upstream_gene_variant
C/A 15465746 splice_donor_variant&intron_variant
G/A 15465755 missense_variant p.Leu10Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25234.1
MEQAWQNCSLQMEMDDDRHGDLMLEECHTQEENFLREILGEPGFSSETETHHHNFTTPTDAETLTMVGSNSKTSSSPRTYILSFDSSTIIPATPQPPSASTLSAKKRHQNLNPEQPKPKSTTQTGKRTRNGSVDHIMAERRRRQELTERFIALSATIPGLKKTDKSSILGEAINYVKELKERVTELEERNKRGKESVMILKKSDVCESSEGDSKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIIAQMGDAYKMTVSDVVKNLRKVFMNHMNINGDPY*


CDS Sequence:
>Vu_25234.1
ATGGAGCAAGCATGGCAGAATTGCTCTCTTCAAATGGAAATGGACGATGACAGGCATGGGGATCTGATGTTAGAAGAGTGCCACACACAAGAGGAGAACTTCCTCAGGGAGATACTTGGTGAACCGGGTTTTTCTTCTGAAACTGAAACTCACCACCACAACTTCACAACCCCCACAGATGCTGAGACGCTAACGATGGTAGGTTCAAACTCCAAAACCTCTTCTTCTCCCAGAACATATATTCTGTCTTTCGATAGCTCTACCATTATACCAGCCACCCCTCAACCACCGTCTGCTTCCACTCTCTCCGCCAAAAAGCGCCACCAAAATCTCAACCCAGAACAACCAAAACCCAAGTCCACAACCCAAACCGGAAAGAGGACCAGAAACGGTTCCGTGGACCACATCATGGCCGAAAGAAGAAGGAGACAGGAACTCACCGAGAGGTTCATAGCACTTTCAGCCACCATCCCCGGTCTCAAGAAGACGGACAAGAGTTCGATACTGGGGGAAGCGATTAATTACGTGAAAGAACTCAAAGAACGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCGGTGATGATCCTGAAGAAGAGCGATGTGTGTGAGTCAAGTGAAGGAGATTCGAAGGATTGGTGTAGAATGCTCCCTGATATTGAAGCAAGAGTGATGGAGAATGAGGTGCTGATCGAGATCCATTGTGAGAAGGAAGAAGGAGTTGAGCTCAAATTATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACTGCCACCAGCGTGTTGCCCTTTGGAAATTCAACTCTTGGCATTACCATCATCGCTCAGATGGGTGACGCGTACAAGATGACAGTGAGCGATGTGGTGAAAAATCTGAGGAAAGTGTTCATGAATCACATGAACATCAATGGCGATCCGTACTAG


Promoter Sequence:
>Vu_25234::LG6:15465837-15467837(-)
TAATATTTCTAATATTTGTAATAGTTTTAAATAATGCGTGACACTAATATTAGAATAAGATATGATATTGAGTTGACGTATGACTAATTAATTTTTAATTAAAAAATAAAAAGTAAAAAAATTAGAAAAGAATAAAAAAAAAGTAAACCACAAACTTACACGCAACCTCCCGTGTTCACAAACGTCGTTAGCAAAAGTATTAAATTTATAAAGTTTAAACCTAATTAAACATGCAAAAAACAACTGGAATAAAAAAAATTATTTTTATTTTTTTAAAAATTGCTTAAAAGAAAAACAGAGAATGATTTTTTGCCTTGGTGAGAACAATTGAGCACTAAAGTGGAATTCTGTGTTGAAAAGGCTGACCTGGTTCACTGTGTTAGATCATTTTTCGGCCCAATAAAAACCTCATTTTCTCTTTTCATTAACCAACCCATTCATATTTACTTTCTGTACCTCCAATTCCACTATTCTTTCACCTTTTATCTTACTAAAATTTATAATCTTATTATACTTATAAACCCAACCACTTAACATTTCTATCTTTCTCTATATTCACTTTATTATATATTTAGAACTATAAATAAATATTATTTTAAAACTATATTTAAGTATAATGCTAAAAATAATTACTTAAACAGACTATTTTTTAACTATGTTTGTAAATTGCACTCTTAATATGAATAACTAATCAAATAGGATTAAATTTTTTTTGGGAATCGCAATACAATAGTTTATCCATATTTAATGTTTGGCAATGTTTAAGTTATCTAAAAAATAGCGTGAAAGTGCAATTAACCTTCTTCAAGTGAAATGATTGTATGCTATTTATATAATTTAATAAGTATAAGTTATATTATATGTACTATAATTCTAGTAATAATACATATGCAGAAAAAAATATTATTTTAGAAAATTTCTGAGGAAAAAAAAATAACAAGTTTGATTATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATATATATGTAACGGTATTCAATTAAATTTGAGGGTTTTAAAAGGCATTGATTGCAAAACTGCATATACTAAATTTCCGGTTATATGTCACCATTATTTTATATATAAGCAGAAAATATTTACCAATGACAAGTGTAAGTTGACTTAAAATAATTTATTAGTTTTGTAATTTCAATTCAAATTTGAAAATTACTCTTTATTTAAGAAAAATGGTCATATGGGATCAATTTTCTTAATTATTTTTTTGTGTCACAAAAATATTCTTATAGAAAAATAAGTGTGGGTTTTGATTTATGTTCCCATAGTCAGTCTCACCTCCTATAGAAAATCACCCTTCAACAAAACTTGATATACTATTTATAAAAATATTATCAATGCCATATTTTGATATATTAAATATGATGTATGTGTGTGTTATGGATTTCTCACCTTTTAGTTGTTACACTTGCTTGATTTATGGAATGATGAAAAAAAAAAGCAGATTTCACCGTTATGAAAAGTAGATAAGGCAATTAAATGATATCCTTAAAAAAGTAGATAAGGCAGATTTCACCGTTATAAATGATAACTTCATTTTACAAACTAAATTAAATATGTAGATTCATTTATGTGAATGGAGACAAACTCTCATAAATTATAGAGTAATACAATTTTACATTTATTTTGCATATAATGTAAAAATAAAGAATAAAATATTGAAGTAAATTTTTATATTTTTTAAGAGAAAAAAAAAATAATATATAATGTAAAATAAATGTTAAAATTTTATGTGTATACAAAAATATAATTTTTTAAATTATATTATTTAATGCGTTCAGTCCTTCGGTCCTCCAATAGCAGGCTTCTTTTCACACCCCCACCGTCCGCTTGCCGGTGAATCATGTACTAAAGAATTTATGATTATTAAATATGAAATGCAAAACATTAATTGAGCAATAGAAGAAGCTGAAAAGTAATGGATATTATTTAAACGGTGGTTTTCCATTGACAGTCATT


Gene Sequence:
>Vu_25234(-)
GAGGCACCTGGACTCAAATCTCTGCAAAATCAACACTTCTGCTTTCTACTCTCCCATGGAGCAAGCATGGCAGAATTGCTCTCTTCAAATGGTAAAATCAGAAACACCAGGTACCATGTTATCGTTGTCGTAAAATGTTATGTTGGACGACCGTTTGAAATTTTGAAATTATTGTTTTGTCGTAGGAAATGGACGATGACAGGCATGGGGATCTGATGTTAGAAGAGTGCCACACACAAGAGGAGAACTTCCTCAGGGAGATACTTGGTGAACCGGGTTTTTCTTCTGAAACTGAAACTCACCACCACAACTTCACAACCCCCACAGATGCTGAGACGCTAACGATGGTAGGTTCAAACTCCAAAACCTCTTCTTCTCCCAGAACATATATTCTGTCTTTCGATAGCTCTACCATTATACCAGCCACCCCTCAACCACCGTCTGCTTCCACTCTCTCCGCCAAAAAGCGCCACCAAAATCTCAACCCAGAACAACCAAAACCCAAGTCCACAACCCAAACCGGAAAGAGGACCAGAAACGGTTCCGTGGACCACATCATGGCCGAAAGAAGAAGGAGACAGGAACTCACCGAGAGGTTCATAGCACTTTCAGCCACCATCCCCGGTCTCAAGAAGGTAACTTGTCCCTTTCTCAACCCCACATTTCTCTCCCCATTCACCATTATTCCAACTTTCCCTTTCCATTTTTAAATATATTATTATTACTCCTCTGGGTATCTATCAGATCAGTGCCTGTTCAACTTTTTTAATTTACATCTTCAACTCGATATTCGATGAACAAAGTTTGTCAACTTTCGCCTCGGTAATCTAAGAATACTGGAATCCTATGCACATTCAGAGTATATTCTTATACACTCTTTATAATTCATTCTTCCTGGATTACATTTTGAGAGACACCATTTTTCGTTCCGCACTTGATATATTGTTTTCTTTGTCAAAAGTTAATCTTGATCTTCACTGGCGTGGTCGATGATCTTGGTGCCGTGGTATATAGCCTGTGGCATGAAGACCGGTCTTGACATTTTCGAGACAAAATCACGTATTTTTTTAAGTAAACTTTACTATATTATAATCCTAAAAAGTACATTAGTAATGAGAGCAGCACATTGTGACACATGCTAGATACCTGGAACACAGCGCATCAGAGCACTCTGTATCGCACAAAACTTCATTTTAGAATCTGTTTGGTTGAGATGTAAGAGATCATTTCAGATTAAATTTTTATGGATTTGCCATCGTTGGAAGACCATCTTGCCACTAAAAGTCATATTTTTCAGTGCATAATTATCTAAGCAACATATTAAAATAATCAATCATCTAAATCATTGAAAACGGTATAATTGATTCTTAGTGCTTTGTGTTATTATTAGTAGATAAAACTATTGATTATATGAAGTTACTTTTACATGATGCAGACGCATGATGTATGAATTGAAGTATTTTGTATATGAATTTGATAAAATGGTTTGTGAGAATGGTATGACAGACGGACAAGAGTTCGATACTGGGGGAAGCGATTAATTACGTGAAAGAACTCAAAGAACGTGTGACGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCGGTGATGATCCTGAAGAAGAGCGATGTGTGTGAGTCAAGTGAAGGAGATTCGAAGGATTGGTGTAGAATGCTCCCTGATATTGAAGCAAGAGTGATGGAGAATGAGGTGCTGATCGAGATCCATTGTGAGAAGGAAGAAGGAGTTGAGCTCAAATTATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACTGCCACCAGCGTGTTGCCCTTTGGAAATTCAACTCTTGGCATTACCATCATCGCTCAGGTACTTTCACCCAACGATTCATGGTTGAAGTAAATCTCTGTACAACTATTTCACTGTTTGCGTTCATGGGTTGCAGATGGGTGACGCGTACAAGATGACAGTGAGCGATGTGGTGAAAAATCTGAGGAAAGTGTTCATGAATCACATGAACATCAATGGCGATCCGTACTAGTGTATCAAACAGTTTGTTTCGAAATTACTACTCACTTGGTCTTTTTATTTTCCGTGGTTTGATCGTGTATCGGCTTTGAAATTTTAAATTTCAAAGATTCCATTTCGTGTTCTTGTTTGTAACATGAAAGCGAAAGCTTCGCTGGGAGTGTTTGCGATGAACACGTTTTCACAAATGCAATATCAAACTTCTCAAAATAAACTC