Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_25051	LG6	13971370	13972689	PREDICTED: transcription factor bHLH87-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/C	13971471	synonymous_variant	p.Ser34Ser
T/A	13971811	missense_variant	p.Leu148Met
C/T	13971903	synonymous_variant	p.Cys178Cys
C/T	13971948	synonymous_variant	p.Ser193Ser
T/A	13972038	stop_gained	p.Tyr223*
C/G,*	13972089	missense_variant	p.Ser240Arg
G/A,*	13972103	missense_variant	p.Ser245Asn
C/T,*	13972104	synonymous_variant	p.Ser245Ser
G/A	13972129	missense_variant	p.Glu254Lys
G/A	13972136	missense_variant	p.Gly256Asp
C/G	13972144	missense_variant	p.Leu259Val
C/A,T	13972146	synonymous_variant	p.Leu259Leu
G/A	13972155	synonymous_variant	p.Glu262Glu
T/C	13972169	missense_variant	p.Phe267Ser
G/T	13972181	missense_variant	p.Arg271Ile
A/T	13972187	missense_variant	p.Asn273Ile
C/T	13972218	synonymous_variant	p.Phe283Phe
A/G	13972233	synonymous_variant	p.Ser288Ser
C/T	13972236	synonymous_variant	p.Ser289Ser
G/C,T	13972237	missense_variant	p.Val290Leu
T/C	13972249	missense_variant	p.Phe294Leu
C/T	13972265	missense_variant	p.Pro299Leu
G/A	13972276	missense_variant	p.Ala303Thr
C/G	13972304	missense_variant	p.Ala312Gly
G/A	13972309	missense_variant	p.Ala314Thr
C/T	13972318	missense_variant	p.Pro317Ser
C/T	13972326	synonymous_variant	p.Asn319Asn
G/T	13972344	synonymous_variant	p.Val325Val
T/G	13972353	synonymous_variant	p.Pro328Pro
C/T	13972365	synonymous_variant	p.Asn332Asn
G/A	13972470	synonymous_variant	p.Lys367Lys
A/T	13972686	missense_variant	p.Lys439Asn

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_25051.1

MDGLSWDSSSQLVGNIPILWSSQPQDLEGEYHHSMPHLCSSVHNQTCYPYPSSEKAREMVHPSTSEIMSILPNMNLSQRTATMPVKSGAVGASWGEALTSQSCPSLSANMNQTSNYVADFNMAHQQQHLISGTQNVKATCSLESLDCLLSATKNGNTDTSLEDDGISMMILSDCRNLCNFSYGSAVSSGESESNASNARNSDMRYASVNELDEAASQSFSDQYISQGRVIDSEVICTKGSNSCFSVAQNSFATEGGFRLISETSPKFKRPRWNRHPGSSNINFQQPNSSVSPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARERRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRAQVKTLENLGNKLDTMNCPPNIAFSFNPSFPVQTHFPVQNPSGNTHNQQSKGRK*

CDS Sequence:
>Vu_25051.1

ATGGACGGTCTAAGTTGGGATTCTTCATCACAACTTGTTGGTAACATACCGATCTTGTGGAGCAGTCAGCCTCAGGACCTTGAAGGAGAGTATCATCATTCGATGCCACACCTTTGTTCGAGTGTTCACAATCAAACATGTTATCCGTATCCAAGTTCTGAAAAAGCGAGGGAGATGGTTCATCCATCCACTTCTGAGATAATGAGTATCTTGCCAAATATGAATCTGTCACAAAGAACAGCAACCATGCCTGTGAAATCAGGAGCAGTTGGAGCCAGTTGGGGAGAAGCTTTAACATCTCAATCATGCCCGTCCCTTTCGGCGAATATGAACCAAACTAGCAATTATGTAGCAGATTTCAACATGGCCCACCAGCAACAACACCTTATCAGCGGCACGCAAAACGTCAAGGCTACCTGCTCTCTCGAGTCACTTGATTGCTTGCTTTCAGCTACTAAGAATGGCAACACAGACACGTCTCTCGAAGATGATGGGATTTCCATGATGATTTTATCTGACTGCAGAAACTTATGCAACTTCAGTTATGGCAGTGCAGTCTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCCAGAAACAGTGACATGAGGTATGCATCAGTGAATGAGCTGGATGAAGCAGCGTCTCAAAGCTTCTCTGATCAATATATCAGTCAAGGAAGAGTTATAGATTCTGAAGTTATTTGCACAAAAGGGAGCAATTCATGCTTCAGCGTTGCTCAGAATTCTTTTGCCACCGAAGGTGGTTTCAGGCTCATCTCAGAGACTTCACCAAAGTTCAAGAGACCCAGATGGAACAGGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCCGTGTCACCTTCCTTTGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTCGGCCAGTGAACTTGGGATTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAACGTTAGGATATCAACTGATCCACAGACTGTGGCTGCCAGGGAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGAGCACAAGTTAAAACACTAGAAAATTTAGGTAACAAGCTTGACACAATGAATTGTCCTCCTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCGTACAAACACATTTCCCAGTCCAAAACCCTAGCGGGAACACCCACAACCAACAGTCCAAGGGTAGGAAATGA

Promoter Sequence:
>Vu_25051::LG6:13969370-13971370(+)

CCTTTATAGGTCATAAGTAACAGAGAATAAATTCCATAAAAAAGTTTTAATTTTTAGGTTCATGAATGGAAACAAAATAACAAAGAAGTGCAATTTCATTAAACACATGAATCAGGATTCTGACATATATTAACCTTCACAAATATTGATACTTGAAACCAATAATGTAGTAAAAAAAATGAGTATTTAAAGCTTAAACTTCATGGCCAGTTAATCTTAACGGAACACGTCATGAACGAATAGATTTATTGACAAGACACAATATCAATCAGACTCTAATAATATTTTAATTCGACACTATTTTCTATAAAAAAACCTTAAATGAATGAATCAATGACTCAGATGTCGTCCAATGAAACATGAATGGTGTGAAATAAGAGAGAAAGACTAGAGTTGAATGGTATGAGAAGCCATTGAATGAAGTGTAATGATGGGGTGCATGTGAGGAGCTCATGAGAAGTGAGACCCCTCCTTCGTTGTCTCCATGAGAGCAATGCAATGAAATCAAACCAACTCAACTCTTATAAAGTTCAGACATAACCACAAACCTGACCAGACACATTTTGCCATACCAAACACCTTTCTCTTTCTCCTAATTTCTGCTACTCTGCCACCACTTTTCCTGTTCCATTATTCCCTTAAGAATAATACTATTCCCAAACCATTTTCTCATCCCCACTTTTCATAAGCTGTTATATACAAAGAAAGTTACAGTATTTTAAATGAGATACAAAGATGTAAAAGCCTCTGTATTATGTACTTCTTACTAAAAAAATTTGAAGTGTTGCATTTCAAGATGGAGCATTTCAAACTGCAGAAAGTTGAATCTTACACGTCAGTACTGTGGTTCTGATATAATCAGTAGATTCCTCAAAGAATTTACCACTTCGACTTAAACAATTACGATAGTAGAAAGTGAAAAACATCACAAGGCTATGATTAAAACTATGATTAACAAAAATCTTTGGAAAGAGAGTGATGCTGGAATAGGTGCTCTCACTTTCACTGCAACTTTACAGTGCGCATGGAATATCCATAAGCAACCAAAAAGAGGTCAGAGCTTTCCCCACTTAAAAAGCATACAAAAAGATGATAAAGTATTCAATTAGCTGAGATTCAAAATTTTCATGTTCCCGTCTGCAAAAATATAGTCTTACACACCCATTAGCCTTATCTTTTCCAAAAACCATTGTACTGCTCAAAAACTGTCAAAGCATATTATATACCCTCTCCTTTTTCTCATAATACATGATCGATGCCTATTTATTGTAGCATTTCCTGACATAGTTGCTCAAGTTCCGATATTTTTATTCTAAAAGCTTGTACCTTTTGTTCTTCCAATCTATATAAGCTTCCATTCAACATACACACTGCATCCTCAGTACTTGTATTCCATGGCATCTGAAGGTACAATGTTTATTCTCTCGCTTTTTTCTCTCGTAAGTTTTTAAACGTATCTGGTCAATGTTTTGAAGCACAGAACTGAACTAAACTTAAAGTCATTGTGTTACTATTCATAATGAAACAGTACATAAAATTCAGTTGCCCAATCTGACATAAGCTTTGGTTGTTTTCTTTCCCTTTATCACAATCTTCATCCTACTCAGTTGAAGAAGGCAGCTAATGCTACACCCTGTTCAGTTCCTGACCCAAGCAAGGATTCTACTCATCCTTTTGGCTCTTGGTTTAGTTTTCTTGTTCTGGAAACAGCTAGATCTGGCATTGGTAAGCTCTTTAACACTATAATCATATCTGTACCTTAACATATACTTTTTAGTTTTTCACACATGTAGACAGTAGACAGTCCTGTTTGAGACATGGTATGTATCTGCTACACATAATAATACATTTGGAAATGTATACGTTAATTTTGGCTTCTGATATATGTCTTCAACATGATGTATAGGTGATTAAGAAGGATCACTTTGTCTTTCAACTGTCATTTGGATCTCTTTTAGTTTCACTTCATCAGTGATTGTTGTCAAGTAATCAATCATCTA

Gene Sequence:

>Vu_25051(+)