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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_25028 LG6 13778254 13782439 PREDICTED: receptor-like serine/threonine-protein kinase ALE2
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 13778833 missense_variant p.Lys100Gln
C/T 13778864 missense_variant p.Thr110Ile
C/T 13778929 intron_variant
A/C 13779007 synonymous_variant p.Ser122Ser
T/C 13779047 missense_variant p.Cys136Arg
T/C 13779147 intron_variant
A/G 13779307 missense_variant p.Ile186Val
T/C 13779383 intron_variant
T/C 13779940 missense_variant p.Leu334Pro
G/A 13779969 missense_variant p.Glu344Lys
T/C 13780082 synonymous_variant p.Cys381Cys
A/C 13780155 missense_variant p.Ile406Leu
C/A 13780221 intron_variant
T/G 13780223 intron_variant
G/C 13780230 intron_variant
A/T 13780231 intron_variant
G/T 13780250 intron_variant
T/A 13780443 intron_variant
T/A 13780494 intron_variant
G/A 13780655 intron_variant
G/A 13780668 splice_region_variant&intron_variant
A/T 13780670 splice_acceptor_variant&intron_variant
G/A 13780672 splice_region_variant&synonymous_variant p.Arg411Arg
T/C 13780726 synonymous_variant p.Asn429Asn
G/A 13780727 missense_variant p.Val430Ile
T/A 13780731 missense_variant p.Leu431His
C/A 13780751 missense_variant p.Leu438Ile
C/T 13780913 missense_variant p.Pro492Ser
A/G 13781801 synonymous_variant p.Gln707Gln
T/C 13781877 missense_variant p.Tyr733His
A/T 13781882 splice_region_variant&synonymous_variant p.Ala734Ala
T/G 13782099 upstream_gene_variant
C/A 13782137 upstream_gene_variant
A/G 13782143 upstream_gene_variant
T/C 13782209 upstream_gene_variant
A/T 13782212 upstream_gene_variant
T/C 13782219 upstream_gene_variant
G/T 13782339 upstream_gene_variant
C/T 13782396 upstream_gene_variant
A/G 13782402 upstream_gene_variant
G/C 13782438 missense_variant&splice_region_variant p.Leu769Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_25028.1
MELQLIFLLIKLHFVTCTPHLHEYAASYLHHSRIRSPSSIAFPPTESPTRVPASSTLPPSKASSRIPGNIALSPSQPFPKRKWTHSSMDSPIPHHKHHHSRRKFSNQAPGPTFSTNPHTHQGHPPVFKSQHSFSSPVNAPAQAPAPAPTLLSQHLNVPYTSPRISPQGSSVKKTRTPPAAYALVLPSPPPNKGCMSLTCSEPLTYTLPGSPCGCVWPLQVKLRISIAINKFFPSVSKLAKEISASVFLNRNQVRIVGADATTQQVEKTTVLINLVPQGVKFDDTTALLIYKKFWQREILSDSSTFGSYEVLYVHYPGLPPSPPSNVYGIDVEPYSGHDNNVTIMKPLGVNVSRKQKEGSGGRMLIMIILSSLAAFVLFIGLVWLFLLKCGSSTLEPGHIPDAKMSSSSKRSGTASVRSLTYASMPGSRSMSFSSGTIIYAGSAKIFSLNEIEKATNNFNSSSILGEGGFGLVYKGDLNDGREVAVKILKRDDQHGDHEFFAESEMLSCLHHRNLVKLIGICTEKQTRCLVYELVPNGSVESHLHGVDKETEPLDWNARMKIALGAARGLAYLHEDCNPCVIHRDFKSSNILLEYDFVPKVSDFGLARTTLNEGNKPISTHVIGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDLSQPTGQENLVAWARPLLTSKEGLQKLIDPIMKDSVSIDTIVKVAAIASMCVQSEVTQRPFMGEVVQALTLVCSETVSFQSATEPCFSLVINLVENQGSTTVIINLWT*


CDS Sequence:
>Vu_25028.1
ATGGAATTGCAGCTCATTTTCCTGCTAATTAAGCTACATTTTGTTACATGTACACCCCATCTTCATGAATATGCTGCAAGCTATTTGCACCATTCAAGAATCCGAAGCCCTTCAAGCATTGCATTCCCACCCACAGAGTCACCTACTAGAGTTCCTGCTAGTTCTACACTTCCACCTTCCAAGGCATCTTCAAGAATTCCCGGAAATATTGCTCTTTCACCTTCCCAACCATTCCCCAAAAGGAAATGGACGCACAGTTCTATGGACTCTCCAATTCCACACCATAAGCATCACCATTCAAGAAGAAAGTTCAGCAACCAAGCTCCTGGACCAACCTTTTCAACCAACCCCCATACTCATCAAGGTCATCCTCCTGTCTTCAAATCACAACATTCATTCTCTTCACCTGTAAATGCACCCGCACAAGCTCCTGCACCAGCACCAACACTTCTATCACAGCACTTGAATGTACCCTATACTTCACCCAGAATTTCACCTCAAGGTTCATCAGTGAAGAAGACAAGAACTCCACCAGCAGCATATGCTTTGGTTCTACCATCTCCACCGCCTAACAAAGGTTGTATGTCACTGACATGCTCCGAGCCCTTGACATATACACTTCCTGGATCACCTTGTGGTTGTGTTTGGCCACTCCAAGTTAAACTACGCATCAGCATTGCAATAAACAAGTTTTTTCCTTCTGTTTCAAAGCTGGCCAAAGAAATTTCAGCTAGTGTTTTTTTGAACCGTAATCAAGTACGCATTGTGGGAGCCGATGCAACTACTCAGCAGGTCGAGAAAACCACTGTTCTCATAAACTTGGTACCCCAAGGAGTGAAATTTGATGATACAACAGCTCTTTTAATATATAAGAAATTCTGGCAGAGAGAGATACTCAGTGATTCTTCTACCTTCGGTTCCTATGAAGTGCTCTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCAAATGTTTACGGTATAGATGTTGAACCATACTCTGGTCACGACAACAATGTAACAATAATGAAACCTTTAGGAGTAAATGTCTCAAGGAAGCAAAAAGAAGGGAGTGGTGGAAGAATGCTTATTATGATCATCCTTTCATCTTTGGCCGCCTTCGTTCTATTCATTGGACTTGTATGGCTTTTTCTCTTAAAATGTGGTTCCAGCACTCTTGAACCTGGACATATTCCAGATGCAAAAATGTCATCATCTTCAAAACGATCAGGAACTGCCAGTGTTAGGTCATTGACTTATGCGAGCATGCCAGGTTCTAGATCAATGTCCTTCAGTTCTGGAACAATAATCTATGCAGGATCAGCTAAAATATTTTCTTTGAACGAAATCGAGAAAGCAACAAATAACTTCAATTCTTCAAGCATACTTGGAGAAGGTGGCTTCGGTCTTGTTTATAAGGGTGACTTAAATGATGGCAGAGAGGTGGCTGTGAAGATTCTCAAAAGGGATGACCAGCATGGTGACCATGAATTCTTTGCAGAGTCAGAGATGCTTAGCTGCTTGCACCATAGGAATTTAGTTAAATTGATAGGTATATGCACAGAGAAACAGACTCGCTGCTTAGTTTATGAGCTTGTCCCTAATGGCAGCGTGGAATCCCACTTACATGGTGTGGACAAAGAAACCGAACCACTTGATTGGAATGCCCGGATGAAGATTGCACTTGGTGCAGCTAGAGGATTAGCCTATCTGCATGAAGATTGTAATCCATGTGTCATACACAGAGACTTCAAATCCAGCAACATCTTATTGGAATACGATTTTGTACCCAAAGTTTCAGATTTTGGCTTGGCTAGAACAACATTGAACGAGGGAAACAAGCCCATTTCAACTCATGTTATTGGTACATTTGGCTACGTAGCTCCTGAATATGCAATGACAGGACATCTTCTTGTCAAAAGTGATGTTTACAGCTATGGAGTTGTACTCCTTGAGCTGCTAAGTGGAAGAAAGCCTGTGGATTTGTCACAGCCAACGGGCCAAGAAAACCTTGTTGCTTGGGCTCGTCCACTTCTTACAAGTAAGGAGGGTTTGCAGAAGCTCATAGACCCAATTATGAAGGATAGTGTTTCCATTGATACCATTGTAAAGGTTGCAGCAATTGCATCCATGTGCGTGCAGTCAGAAGTCACTCAGCGTCCTTTTATGGGTGAAGTTGTTCAGGCCTTGACATTGGTATGCAGTGAGACAGTGAGCTTTCAGAGTGCAACAGAACCTTGCTTCAGCCTAGTTATCAACCTGGTTGAGAACCAAGGTAGCACTACTGTCATCATAAACTTATGGACTTGA


Promoter Sequence:
>Vu_25028::LG6:13776254-13778254(+)
TTTTTAACTGATACAACTAATCGATTTGAAAAATACTAACAAAAAAAAAAAGTTAAGAAGTGAAGAAAGTGAATATTCAATTCCATATACTTAAAATATTTCATTTTCTTGATTTATTTCAAATATTTATTTATAGCATTATAAAAATATGTTCTTTTATTGACCAGAAGACAATTTTCCCTATTAACTAGAAAAATACTTTCCAAGTTAAATAGGATATCACTAACTATAATCCCTTCAAATATTTTATTTTAACAACTTATTTTTTATTAAGTTAGATTGAAAGTATATGAAATACCCATGGTTCTCTTGTTTATTAACATGTAACCTTATAATTGGATACTTGATTATAAAGAGGTCTAAATAAATCAGATAGTTTATTAAATCGTTTAATGAAAAATGTTTTTTATATTAGTTTTTAAAACTGTATTATTGATAGGAAACATCTTTTAATTTTGTGAATATCATTAATGCGAGAGAACTTGATTAGCAATCACACCACCTACTTAGCTTTAATATTATCAAATCAAATGAATAATACTTTTAGTATACAAATTTAAAATAATTTTAAATTAAATTCCTGTCTAACCTCATAACTCCACGCAATAAAACTGTTGGGTATTTTAAAGACATAAATCTTGACTAAATTGAGTCAAACAGATCTTCCAGAAAGCTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACTTAAGATTTTATTCTTGAAAAGTCAAGTTCTTCACTTCCACCAACAGATGTTGGTGTTATCACTATAATTGCATCAACAAATGACTTTAACATCTAAAACAAGTTGAAGTGTTACAAATGAAATTTAAATCAAACGATTCATAAACAAAATAGACAGTTATCAAGAAATCTGCTTCCATTGATCTTTAAACTATATTTTTTTTTGAAAAAAAAAACTTTTTGTACAATAATTTTTATGTAAAGAAATGAATGAGGTTTTTTTGCTTTCCAACCCCCAGAGTAGCTATGTAAGTTATATAAATTAAACCAAAAGCAAAATTCCTTTGGGTGAAAAATAATTAGAAAGAAAGTCAGTTAATGCTTTATTTAAAAATTAAATATATTTTTCGTTCTTAAATCATTACAAGAAAAATTTATAAAAATATTTTTTTCAAGATAGACACAATATTTGTACAGTGAATTATAATATAATTTATCTTTTGTCCGTAAAGATGTTTTATACACACTACACATACTGTTTATTGGAAAGGAGATTTTATATAATTTTCATAAAATAAAATATTTTATAATTTAATTAAAAGTAAAATGCAATCTTGTATAATAATTTAAAAATGAATAATATATTTAACCAATCTCAAATTCTTTCACAGAATAAACATCTAATTCAAACAGTTAATATAGTTAATTCGAGAGTCTCTCCTAAGTAAACGTTTATGTGATTCAGTACTTTGTCTCTTCTCTCTCTTAAAATCAAGAAAAAAAATATTTCTATATAAATTTTTTTACAACATTTTTATACAATACATATATTATTCTTTTATTAATTCATTATTTATTTGTTAATATACTAAAAAAATGACACTGTGTTAAAATATTGTAAAAATATTTATATTAATACGATGAAACTACACTAACAGAACTCCAACCCCACCAACCATCTTACAGAGAAGTTATTCTGTATCTAGTCGCTGGGATTCTACTGTGGTGATTTTTTAGCTGCTCAGTTATTCTCAAGAACAATAAAACTGTCATTTCCCAGTCATTAATTATGAAAACAGGAAGCATGCTTGTCTTCTCCTTCCTAAACCATTCTCTTGCCATCTTATTTCCTATTAATTTGGTTACCACTGTCGGTTTGCTTATATTTTAGTCTTTTTCGTAGTAGCTTCTCTCTTACTGTGCTTCAGCGTATATGCTGCTGCTGCTAACTCCAAACAAACACACTTCAATTTGTCGGTGAAAGATCTTCAGAA


Gene Sequence:
>Vu_25028(+)
ATGGAATTGCAGCTCATTTTCCTGCTAATTAAGCTACATTTTGTTACATGTACACCCCATCTTCATGAATATGCTGGTATGAGTTTGATTTAGATGTTCTCATCAGTTGCTTTATACATACTGCTGCATGTTTGATCCGTTTGAAAAAAGTTCATAAATTGTTGTTGAACATGAAATGTGGTTCATTATACATTTACACATTAAAGGGTATTTTTTTGTTTGAGGAACTGTTCCTTTGCTGGAAAATAAATAGATGGGAAACTAGTTCCAAGCTTTATTTAGATGTTCATAGTATCCGCTGCTATGGTTTTTCATGTTGATTCTCTGTGAGACTGAAGTGATTTTAAATTCTGTAGCAAGCTATTTGCACCATTCAAGAATCCGAAGCCCTTCAAGCATTGCATTCCCACCCACAGAGTCACCTACTAGAGTTCCTGCTAGTTCTACACTTCCACCTTCCAAGGCATCTTCAAGAATTCCCGGAAATATTGCTCTTTCACCTTCCCAACCATTCCCCAAAAGGAAATGGACGCACAGTTCTATGGACTCTCCAATTCCACACCATAAGCATCACCATTCAAGAAGAAAGTTCAGCAACCAAGCTCCTGGACCAACCTTTTCAACCAACCCCCATACTCATCAAGGTTTAATTATCTGACACATAAAGTTAATGCACAGTTTCAACATTTCTTGCCTTGAACACCTCAAAATTAACTACATTTCTTCTGTAAACTTCTCTTGAAAATCTAGGTCATCCTCCTGTCTTCAAATCACAACATTCATTCTCTTCACCTGTAAATGCACCCGCACAAGCTCCTGCACCAGCACCAACACTTCTATCACAGCACTTGAATGGTATTAAACATTCATTTCTCTTACTTTTGTTTCTTATGTGTTGTCTACCTTGACTGCTAACTAGAGTTAGCACCTCATTGTTTGTGCCTTGCTCTGTCCATCACCATCAGTACCCTATACTTCACCCAGAATTTCACCTCAAGGTTCATCAGTGAAGAAGACAAGAACTCCACCAGCAGCATATGCTTTGGTTCTACCATCTCCACCGCCTAACAAAGGTATTATTGATTCCTTCTCTTCAATAATCCCACCCAAGTTATCCGATATCTGTGTATTGATCTTTTTCCTAATTGGTCTTTAGGTTGTATGTCACTGACATGCTCCGAGCCCTTGACATATACACTTCCTGGATCACCTTGTGGTTGTGTTTGGCCACTCCAAGTTAAACTACGCATCAGCATTGCAATAAACAAGTTTTTTCCTTCTGTTTCAAAGCTGGCCAAAGAAATTTCAGCTAGTGTTTTTTTGAACCGTAATCAAGTACGCATTGTGGGAGCCGATGCAACTACTCAGCAGGTCGAGAAAACCACTGTTCTCATAAACTTGGTACCCCAAGGAGTGAAATTTGATGATACAACAGCTCTTTTAATATATAAGAAATTCTGGCAGAGAGAGATACTCAGTGATTCTTCTACCTTCGGTTCCTATGAAGTGCTCTATGTTCATTATCCAGGTTATACATTAATAATTTTTTTAAGACCATTTTGTGTTGTACTATATGAAGTCAATAAATGTAGTATATTTGATTTCATTTATCCTTTTTTGATAACATATTCAGGTCTTCCACCATCTCCACCTTCAAATGTTTACGGTATAGATGTTGAACCATACTCTGGTCACGACAACAATGTAACAATAATGAAACCTTTAGGAGTAAATGTCTCAAGGAAGCAAAAAGAAGGGAGTGGTGGAAGAATGCTTATTATGATCATCCTTTCATCTTTGGCCGCCTTCGTTCTATTCATTGGACTTGTATGGCTTTTTCTCTTAAAATGTGGTTCCAGCACTCTTGAACCTGGACATATTCCAGATGCAAAAATGTCATCATCTTCAAAACGATCAGGTAACTTAAAGTACTGATTTCTTCAAAGTCTTGATGGCACTTTAGATACCGTAACAAGGAAGTTTTTGTTTTCTATCCGTTGTTTAAACAATTAAGCGTTGTGATGATTTCTTTCATGCAATTAGAAATACTTCTGTCCTTTTATTTGAAATCTTTAAAATGGAAATATTGATTGTGGGTACCAGAGATGACTGGAGAATACCAATATTGTAGGTGTCTATGTTTGAGACAAAACTCATATCAAATGTTTATTCTAAAAGCAAGTGAGGACTACCTTTACCTTTTGGTAATTTTTGAAGACCTAATTTCATGGACAACTCACTTCATGAAGTTTGAAGTGTCAATTTCGGCTTTTCTGGTTACAGTGCTAATTTAGTTTTTTGTATTCTGGGATTTATTCAGACATTGTGCTTGAAAAATCTTCATCTTAGCTATTTACTTGAGAATCTCCATGTTCAAGTAGATAACAGTGGAATTCATTATGAATATGTTCAAAGCAGGAACTGCCAGTGTTAGGTCATTGACTTATGCGAGCATGCCAGGTTCTAGATCAATGTCCTTCAGTTCTGGAACAATAATCTATGCAGGATCAGCTAAAATATTTTCTTTGAACGAAATCGAGAAAGCAACAAATAACTTCAATTCTTCAAGCATACTTGGAGAAGGTGGCTTCGGTCTTGTTTATAAGGGTGACTTAAATGATGGCAGAGAGGTGGCTGTGAAGATTCTCAAAAGGGATGACCAGCATGGTGACCATGAATTCTTTGCAGAGTCAGAGATGCTTAGCTGCTTGCACCATAGGAATTTAGTTAAATTGATAGGTATATGCACAGAGAAACAGACTCGCTGCTTAGTTTATGAGCTTGTCCCTAATGGCAGCGTGGAATCCCACTTACATGGTAGGCTAAGTCACTGATGTGATGATGAAAGTCATCAACACTTTTGAAAGCCAATTTTTAAGAGCCTGATTTTTAATACTCTAACTTGTGGCTAGGTGTGGACAAAGAAACCGAACCACTTGATTGGAATGCCCGGATGAAGATTGCACTTGGTGCAGCTAGAGGATTAGCCTATCTGCATGAAGATTGTAATCCATGTGTCATACACAGAGACTTCAAATCCAGCAACATCTTATTGGAATACGATTTTGTACCCAAAGTTTCAGATTTTGGCTTGGCTAGAACAACATTGAACGAGGGAAACAAGCCCATTTCAACTCATGTTATTGGTACATTTGGGTAACAATCTCTTCCTAGACCTTTTTGTATTGATGATTTCATGGGTCATGGACATGATAGTCAAATTAACGGTGTTTGCAATGTACTCATTTCACTTCCTCTAGATGAAAACTGATTTTGTCTCGTTGGCATCTTGTTTTGAAGCTACGTAGCTCCTGAATATGCAATGACAGGACATCTTCTTGTCAAAAGTGATGTTTACAGCTATGGAGTTGTACTCCTTGAGCTGCTAAGTGGAAGAAAGCCTGTGGATTTGTCACAGCCAACGGGCCAAGAAAACCTTGTTGCTTGGGCTCGTCCACTTCTTACAAGTAAGGAGGGTTTGCAGAAGCTCATAGACCCAATTATGAAGGATAGTGTTTCCATTGATACCATTGTAAAGGTTGCAGCAATTGCATCCATGTGCGTGCAGTCAGAAGTCACTCAGCGTCCTTTTATGGGTGAAGTTGTTCAGGCCTTGACATTGGTATGCAGTGAGTTTGAGGAAACAAGAGTTCTGTAAGACCGTAAAGTCTTTTAGAAGATGACCCTGTAATTGGTCTTGTAACCATTGTTCCAGGTGAGACAGTGAGCTTTCAGAGTGCAACAGAACCTTGCTTCAGCCTAGTTATCAACCTGGTTGAGAACCAAGGTAGCACTACTGTCATCATAAGTAATGCTCACAAGGGGCAAGAATTTGAGTCATTGGGTTTGCTTATGTATAGGGGACAGAAATTTCAACTAAATTCCCATTAAACTTTCTCAAAGCAAATTCTAATGACAATGCAAATTTGTTCGTCATTACTGACTATAATGGCATTGGAAGTTGATGTCACAAACTTTAAGAGTTAAAACAAGTACTTGAAGTCAAATGCTTATTGATGTAACAATTAAAGAACATAAATTTGAAATCTACAGTCTTCTAAGTGGCTGAAGTAAAAATCAGACACGAAACACATACTAACTGATTTTAGTTTTGAAATGCAGATTACTTCTTTATTCAAACACATACAAACTGATTTTCGTTCTGAATGCAGACTTATGGACTTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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