Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_25025	LG6	13756608	13758092	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, protein phosphorylation, protein phosphorylation, regulation of stomatal opening
Cellular Component	located in	cytosol, nucleus
Molecular Function	enables	protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity
Pathway	B 09181 Protein families: metabolism	C 01001 Protein kinases [BR:ko01001]

SNP	Position	Effect	Amino acid change
T/A	13756642	missense_variant	p.Lys484Met
C/T	13756656	synonymous_variant	p.Gln479Gln
A/G	13756661	synonymous_variant	p.Leu478Leu
A/G	13756923	synonymous_variant	p.Asn390Asn
T/A	13756925	missense_variant	p.Asn390Tyr
A/C	13757091	missense_variant	p.Asp334Glu
T/C	13757095	missense_variant	p.Asp333Gly
A/G	13757328	synonymous_variant	p.Asn255Asn
G/A	13757484	synonymous_variant	p.Tyr203Tyr
T/C	13757487	synonymous_variant	p.Gly202Gly
G/A	13757491	missense_variant	p.Thr201Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_25025.1

MATNQLKEPPKRLQYPLDSSSYKLLNEIGAGVSAVVYKAICIPMNSAAVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILKAHCSFTVDRRLWVVMPFMAAGSLQSIISHSHPNGLTEPCIAVVLRDTLNALSYLHGQGHLHRDIKAGNILVDTNGQVKLADFGVSASIYESSTCSSLKFTDVAGTPYWMAPEVIHSHTGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDLDKYRKGNGNKFSKAFKDMVASCLDQDPSKRPTADKLLKHPFFKNCKGTDFLVKNVLLGLPSVEKRYKESKVNEHADGGGHDDDDDDDDEDPAMLVKERRISGWNFNQDGLELDPVFPNDDAGAKKAELGGESVIRKMEELVNVGGNEAGSGGGGVKKREKMLTTLNILKGSLEQELLEVKFLVNTIRGEEESDRDQVAAAASADHSEEKEISRLRAALENERKKNLQLELQLHNCKIQLSSLNISN*

CDS Sequence:
>Vu_25025.1

ATGGCAACCAACCAACTCAAAGAACCACCCAAAAGGCTCCAATACCCACTCGACTCTTCCTCCTACAAGCTCCTCAACGAGATCGGCGCCGGCGTCAGTGCCGTCGTCTACAAAGCCATCTGTATCCCCATGAACTCCGCCGCGGTCGCAATCAAATCCATAGACCTCGACCGTTCCCGCCCCGACTTGGACGACGTTCGTCGCGAGGCCAAAACTCTGTCCCTCCTTTCACACCCTAACATCCTCAAAGCACACTGCTCTTTCACCGTCGACCGCCGCCTCTGGGTGGTCATGCCCTTCATGGCCGCAGGATCTCTCCAATCCATCATCTCTCACTCCCACCCCAACGGCTTAACCGAGCCCTGCATCGCGGTGGTTCTTAGAGACACCCTCAATGCCCTCTCCTACCTCCACGGCCAGGGCCACCTCCACCGTGACATAAAAGCCGGGAATATCCTCGTTGACACAAACGGACAGGTAAAGCTCGCGGATTTCGGCGTGTCGGCTTCCATCTACGAGTCCTCCACGTGTTCCTCTCTCAAGTTCACCGATGTTGCAGGCACGCCGTATTGGATGGCTCCGGAGGTGATTCACTCGCATACAGGATACAGTTTCAAGGCTGATATATGGTCCTTTGGGATAACCGCTTTGGAGCTCGCGCATGGAAGGCCTCCTCTCTCCCATCTTCCACCTTCAAAGTCCATGATGCTCAAGATCACCAAGCGGTTTCGGTTCTCCGATTTGGATAAATATAGAAAGGGGAATGGGAATAAGTTCTCCAAGGCGTTCAAGGACATGGTGGCTTCTTGTCTGGACCAAGATCCTTCCAAAAGACCCACTGCTGATAAGTTGCTGAAACACCCCTTCTTTAAAAACTGCAAAGGAACTGATTTTCTGGTCAAGAACGTGCTTTTAGGGTTACCCAGTGTGGAGAAAAGGTACAAGGAGAGCAAGGTTAACGAACATGCAGATGGGGGAGGCCACGATGATGATGATGATGATGATGATGAAGACCCCGCCATGCTGGTGAAGGAGAGAAGGATTAGTGGATGGAACTTCAACCAAGACGGGTTGGAGCTTGATCCTGTGTTTCCAAACGATGATGCGGGGGCTAAAAAGGCTGAGCTTGGAGGGGAAAGTGTTATCAGAAAAATGGAGGAGCTTGTCAATGTTGGTGGAAATGAAGCAGGAAGTGGTGGTGGTGGTGTGAAGAAGAGGGAGAAGATGTTGACGACTTTGAATATTCTGAAAGGGAGCTTGGAACAAGAGCTGTTGGAAGTGAAGTTTCTTGTGAATACAATAAGAGGAGAGGAGGAGAGTGATCGTGATCAAGTGGCTGCTGCTGCTTCTGCTGATCATAGTGAGGAGAAGGAGATTTCTAGGCTCAGGGCTGCACTGGAAAATGAGAGGAAGAAGAACTTGCAGCTGGAGTTGCAGCTCCACAACTGCAAGATTCAACTTTCTTCTCTCAATATTTCCAACTAA

Promoter Sequence:
>Vu_25025::LG6:13758092-13760092(-)

TTTGTACCAGGTAACCTATAATTTCATTATTGTGTTGATAGAAAATTGAAGCTTATAATGTATGATCTGTAACACAATTTGTTACTATTTCAATAACTTCCTATGTTATGTGTCCTTCTGCAGTCATTATAGATTTTTGAAAATACAACTTGTTGATGGATGTGTTTGTTGATCTCTAACAACTTCTGCAAAATATTTCTTTGAAAAAGTTGTATGATATGTGAAACAATTTAGGACTTTTGACGAATAAATTGCACACCATCTTCATACTCCTTCATTTCGCCATTTGCAAATATGACTGTCAAGTATGAATTTGATAGGTTTTATGTGTCGCTAAACATATGCGTGGCAAAATTATCCATGTAGTGATGGGTTTATGCTTGAGTTAACTTAAGTAAAATAAGTGTATCAAAAAATGTGGTGAATGGATGAAAGTTATGTATGTGTAAGTTTTTATAATGCACCAAATAAAGTACTTGATGTGACATGAATAATAATAGTTTGAATAATCATAAAAAATGTACATTTATTACAACAAAAGTACATTGTTATTTATCAAACAAGTATTTTATAATGCTATTTGTTATCCATGTCTTTCGATGTCACAAGTTTTTTGTGTTATTTGTCTTTAAGGTTGTGTTTGTTGTTCTTATTTGTGAGATTCATTGTCTTCATCACTTTCTTCAGTTTCAATCGATTGATTTGGATGTTTTGACGGTTGGTGAGACATTATAAAATGATAAAAATACTGTAATGAAGAACCTACATGGAATGCGGATGGTGGATCACCGTGAAAGTGACAAACATATGTGATGGACTTGCACTGAAGGTTAATGTTGGTGAAAATTTGTCATAAGAGGTAAGAACTTGATGGTAGATGAGTCAGGTGGGACATTTTACTCCCAATGTCCATATCCAAACATTTGATGTAGATATTGAAAGTAATGAAAGGAAGACCTATGAGGGTCATGGTAAGGTTGTGGGTGAGGAGGTTGTTGTGGTGTATTTAGAAAAAAACAATTTACTTTATTTCTTTTAAAATAATAATAGCACGAATTAAGAAAAAAAAATTGTGAACTCATCATCAGACGATTTTTTTTAAAGGTGAAATATACTGAATAATATGACTTATGTACCATTGCATTGCACACATTATATTTATAGTCTCGACACCATAAATTAGGCTTATCAAGTCCAATTTCATCCCTACTAAATGAAGTTGGTCTACTACTTGAATCTATAACGAAATAGATCAATCAATTTTGGATAAACTCAAAAATATTTTTTCGGCCACAGTATAGAAGGACATGTCGATTTCATCAATAATTCTTACATCTTTGTATTGTTCATTGTTTCTTAATGCATATACATCACAGATTATTTAATTAATTGGAATTTTCGTCAATTACAAGATATCATCTGTATAATAAGAATCAAACTCTTCTGGTAATCAACTGCAAAGAGGTGTAATCGATTGCACTTTTGTGTTTCATAAAAAACAATTTCATGGTAAACAATTAGGGAACTTATAATCGATTCCAGTTTTGAGTAACACGAATAGAGTTCACTGGTTGGATGTCTTTTTATCTAAAGAAAACAAATTAAAAATTGTCCTGCATCCTCAATTATATCGTGATAAAATTGTTGAGAGACATGATGACTTTCACTTTTCATATTAAACAAAAGAGTGACATGTACAAACGGCAAGACTTTGTAATTTTTTAAATTTTACCATTTTCATAATATATGTTTCGGATTTGCATAGGAAAAAAAACTAAAAATATGGCATCCATTCACGTGATTCAAAGTGATAGAAAAAGGCGATTGGTTATATATGCAAGGCTATGTGATTATTCACATGCATGCACGGAGAACTCAACGCAACACTTCCTTTTTCTTCAACAGTCACAGGAAAAGCGCTTTCAATCACTCACTTTCTTCTCCATTAATTCCTCCACCACTCCATGCAACAATGCATCATTCATTCATTTCCATTCTCC

Gene Sequence:

>Vu_25025(-)