Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24995 LG6 13534375 13536385 PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
C/A 13534408 synonymous_variant p.Arg12Arg
T/C 13534502 missense_variant p.Ile43Thr
G/T 13534574 upstream_gene_variant
A/G 13534576 upstream_gene_variant
G/A 13534703 upstream_gene_variant
G/A 13534707 upstream_gene_variant
T/A 13534708 upstream_gene_variant
C/T 13534752 upstream_gene_variant
G/A 13534771 upstream_gene_variant
G/T 13534836 upstream_gene_variant
G/C 13534844 upstream_gene_variant
C/T 13534879 upstream_gene_variant
T/A 13535054 upstream_gene_variant
C/A 13535143 missense_variant p.Asn104Lys
T/A 13535217 upstream_gene_variant
A/T 13535218 upstream_gene_variant
C/T 13535262 upstream_gene_variant
T/A 13535322 upstream_gene_variant
T/A 13535323 upstream_gene_variant
A/T 13535569 upstream_gene_variant
C/G 13535577 upstream_gene_variant
G/A 13535617 upstream_gene_variant
T/G 13535628 upstream_gene_variant
G/A 13535686 upstream_gene_variant
A/T 13535789 upstream_gene_variant
T/C 13535792 upstream_gene_variant
T/A 13535796 upstream_gene_variant
T/C 13535998 synonymous_variant p.Tyr151Tyr
A/G 13536065 upstream_gene_variant
C/T 13536080 upstream_gene_variant
G/A 13536098 upstream_gene_variant
T/C 13536205 synonymous_variant p.Leu194Leu
G/T 13536322 missense_variant p.Gln233His
A/G 13536323 missense_variant p.Asn234Asp
A/G 13536380 missense_variant p.Thr253Ala
C/T 13536381 missense_variant p.Thr253Met

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24995.1
MNCSSWGTSESRSLSLKVDFLPQQCHRSKTLSFQFQEQDSSSIHSGQSSTRLGSAQSGEMSVQHSSTGSTPQHRSFMQNHDFTFPPPLLDHSQTLAHYADPGYSNLMASSYVPQSMPVEAAPIRIPLQLDIKEEPIYVNSKQYHAILRRRLYRAKLEVQNKPIKDRKPYLHESRHLHAVNRARGAGGRFLNTKKLQQSTRTRGNTAESNMHKIENYRDGDNATYASNTAARNMQNYTSDKGGGTTHQQPLFVYT*


CDS Sequence:
>Vu_24995.1
ATGAATTGTTCATCATGGGGGACTTCAGAATCCCGAAGTTTGAGCTTAAAAGTGGATTTTCTGCCACAACAATGCCACAGGAGCAAAACGTTGAGCTTTCAATTCCAAGAACAGGATTCATCTTCGATTCATTCGGGTCAATCTTCTACCAGACTTGGTTCAGCACAATCCGGTGAAATGTCTGTTCAGCATAGTTCTACTGGTTCAACACCTCAGCACAGGTCATTTATGCAGAATCATGATTTCACCTTCCCTCCTCCACTACTGGATCACAGCCAAACACTTGCTCACTATGCTGATCCAGGCTATAGCAACCTTATGGCTTCTTCATATGTTCCACAGTCTATGCCAGTGGAAGCTGCTCCTATTAGAATTCCTCTGCAACTGGACATTAAAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGAAGAAGACTGTATCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGGATCGAAAACCTTATCTTCACGAGTCCCGCCATCTACATGCAGTGAATAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAAGCTTCAACAATCAACTCGTACTCGTGGAAATACTGCAGAATCTAACATGCATAAAATAGAAAACTACAGAGATGGTGATAATGCAACATATGCATCTAACACTGCTGCAAGAAATATGCAGAATTATACATCTGATAAGGGTGGTGGCACCACTCATCAGCAGCCTCTATTTGTCTACACGTGA


Promoter Sequence:
>Vu_24995::LG6:13532375-13534375(+)
TCATACTCAGAATCTTACATCATTATCATTATGCTTGTTTTTCTTTTTTTATGGGAACACTATGATTTTGTTGATACCATTCTATAAAATGATTGTTAATAAATTAAATATTATAAAATTTAATTAAAAAGGAAACAACAATTTTTTAGATTAAAACATAAATATAGTAAATATTTTCCTTTTCAATCAGATACTGCCATTCTAAGGTGTTTAAAAACTATTATAAATATTTTATTATTATTATTGTTATTGTTATTATTAGATTTAATTTGCACGAATATTCGTAAATTTATTTTACACTATTAGTCCATTAAATCAAAATGTTGTCTACAACATTTAGAGTAATTAATTAATATAATAAAAGCTTTTTCAAGCTAAGTACATTTAAATCAAATTGATATTAACATTACCTTATGAATTTAATTTAAATAAACTAAAAGTGTAACCAATTTTAACATTATATTCTAATTACAAACTTATTACCCTAATCACATTAAAAAAAATTAATTGTATGATTTTTAATTAATTAATTAATAATATAAGAAATTATTCATACAACAACTCACATAATCATTTGTACAATGACATTCTTCTCTTTTTTTTTCTATCTCTCTTGGCCCTCACATTTGAGGTTTTTGAATGTAATACTGAAATAACAGTGCTCTTCTTTTGGTGAGTTAACGAAAGAAAATAGTTGTCTTCTGCAGATTTAATACAAATCAAGCTGTGTAATTATTAACTTGCAAGAATTAAATAAGCAGAAGAAATGATAAAAAAAAGTACATTAATGGGGTTTGGCAGCACAGAACTGAGGTTGAAAAATTGGAGGCATTGAAGATGTAATAAGAAAAGCATATGATAGCAGGAGGAAGCATGATGATGAAAGAGTGCGATGCCATGCCCCATTACAAAATTCTTATTTCATTTTTTTAAAACCAGACAACAAGGAATATCAGTAGGGACAGCAAAACGACAAGAATGGAATGCATCACCATAAATCATTTTTAATTCAAAGATATTTTGAAACTTAGATTCTCATTTTGAAAAATGTTGTCTTTCTTATTTTCTCTTTAACATGGTAAGTTGGGCAGGTAACAGATGAGTGTAGTTGGTGTGTGTTAATGCAACAGTCACTGTTTATAAGACTCAGTAGAAGCCACTTTTAAGGGTCAAGAATTTCTTAGCACCAAAGCCAAGAGACCAAAAAGACTAAAACAATGATGCACTCCTTCAAGTGTGATGTGTGACTCAGAGTCTCTTCTTAGCTTACAAACTTTCAACCCACAAGACATGCACACCTTCTGATTCCTCTCCAATTCAGCCAATTTCCAAGGTCTCTCTCTCTTGTTGTTTTTTCCTTTTCAACTTATCTTTGCTTTCTTTCTTCTTTAATTTGTAATTTCATGACATGCCTTGAATCAGTGAAAGGGTCGTTCTTGAAGCTTAGGATGATGGAACAAATCTTAGATAGATAGTGGATTTTCTTAGTTTTGCAGGAGACTAGGTGGTTGATAAATTGTCTTTTGTTCATGCACTCCAAAAATTGGAATCTTATGTTTGCTTGAGGTGATAGGTTTGTAAGTTGTAGCTGTTGTTGATTGAATTGGAGAGTACAAATAGTTCTTCAGCACAGATCATTTTCTCTATGTCTAGTAAAGCTGCTTGTTGTTTTCTGTAAGGCAATTTAGATATCATGGTTGACGAAGGATAAGTTGATCCAAGAGTTGAACTGCTAAAATTGTTCCTCTGATTACCTTTTATGGGGTTTTCTTCCACAATCTCTTTTCCCAATCCACAAGCTAGAGTGTATTTTCTGAACCACAGATGCTCACAGGGTTTATAGGGAGCTGTAAAATTGGCATGTTTCATTGGAGTTTGATATACTTACTTTATTTGGAACTCTCAAGAGGAGTTTATAGGCTTATTTTCTCAGTTCTATTTATCTCTTTGTTTTCTCTATGAAGTCAAGTGGATTAGTGTTCCAAGAGGTCAGAAAACAA


Gene Sequence:
>Vu_24995(+)
ATGAATTGTTCATCATGGGGGACTTCAGAATCCCGAAGTTTGAGCTTAAAAGTGGATTTTCTGCCACAACAATGCCACAGGAGCAAAACGTTGAGCTTTCAATTCCAAGAACAGGATTCATCTTCGATTCATTCGGGTCAATCTTCTACCAGACTTGGTTCAGCACAATCCGGTAATTGGATTTAAACCCTGTCTTTTTGTACAATTCTGAATACTTGTGTACTTATCAACTGGGGTTCTGTCATTTCTTTCTGCTATTGCGGTATGTATTTCTGGCCGTGAAACTGTAGCAGTACACTGTTTCGCAATAGAAACGAAATGGAGCACTGCAGGTATATGACAGTGATGTGATGTGATCCTATGTTGCATTAAATCCTCACTCAGCATTGGCTATTGGATAAAAGTTTCATTCACACATATGATATAAGATTTTCTTCCAAAGTTGGAAATTGTCTTAGATAGCTTATTCGGCATCAGAAAATTCTTGTCAAATTCCCTGGCATGCTACTTCATATACCATATTGATGAGTATTTTCTCTGCTTTGGATGATAGGTGAAATGTCTGTTCAGCATAGTTCTACTGGTTCAACACCTCAGCACAGGTCATTTATGCAGAATCATGATTTCACCTTCCCTCCTCCACTACTGGATCACAGCCAAACACTTGTAAGTAGATATATTCTCAAGTTCTTCTGGATGGAAGATATATGCATATGTTTTCCTAAAATTTGTGTTTCAGGCTCACTATGCTGATCCAGGCTATAGCAACCTTATGGCTTCTTCATATGTTCCACAGTCTATGGTAATTAGTACTTCAGTACACATTATTCATGTATTTTCATTACTATTAACGTGGTATGCAGGCTCCCTTTAATTTGGACTGCATTCTGATCAAACAAAATTTCACATGAATGTTAAACGTTGCAGTGGAAAATCCTGTTTATAACTTAATGTGGTTCTTCTAAACGGAACATTCAAGAGTTCAACACTATATCCACTGTTTTTCCAATTTCTTACAACCTTAAGATTCTTTTCAGCAGTAATCCATGGTTTAATTATTTTTAAGGTTTGTTGTGCTGCGGATTATTCACCGGCATGGCATATTCTCATTGCTCATAGTATCTCTGTTTAAAAAGTTCCTCATCTTTCCTTTGCATCTCGTTTTTTCCTCTTTGCATTATTTATCAAAATTATAATTTATGCTGGGGAATTTATGTCTTATCTTGAACACCAGAACACCAAGGTTTTCTTTATTATAGCTTTTGAACAATTGAAGATACAATCTTTACAAGAATATTCTTGTTGGCCTTCGCAATTGGAGATGAGATGTGATAAACTTTCCTGATACTAAAATTCACTGTTTTACCTATATTTCTCTGCATCCTCTTTTCAGAGTCATGTTTCTTACTGTTTTAGTTCTCTAAATTGTTTAATTACCTTGCACAACAAAACCATGAAAGTTGTAGCAGCATGAAGACCAATTCTGAAAAACACTGATGAGATTCCTAATGTTCAGCCAGTGGAAGCTGCTCCTATTAGAATTCCTCTGCAACTGGACATTAAAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGAAGAAGACTGTATCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGGATCGAAAAGTACTAAACATGTCTATGTCCATGTTTTTTTCTCCACAATTTCTGCTAAACAAAGTTAATAACACTGTTGCCATGCAGCCTTATCTTCACGAGTCCCGCCATCTACATGCAGTGAATAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAAGCTTCAACAATCAACTCGTACTCGTGGAAATACTGCAGAATCTAACATGCATAAAATAGAAAACTACAGAGATGGTGATAATGCAACATATGCATCTAACACTGCTGCAAGAAATATGCAGAATTATACATCTGATAAGGGTGGTGGCACCACTCATCAGCAGCCTCTATTTGTCTACACGTGA