Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_24965	LG6	13328128	13330869	PREDICTED: serine/threonine-protein kinase-like protein ACR4	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/T	13328143	missense_variant	p.Val6Phe
T/A	13328154	synonymous_variant	p.Val9Val
T/C	13328159	missense_variant	p.Ile11Thr
A/G	13328215	missense_variant	p.Met30Val
T/C	13328272	missense_variant	p.Ser49Pro
A/G	13328313	synonymous_variant	p.Ser62Ser
G/A	13328391	synonymous_variant	p.Leu88Leu
G/A	13328607	synonymous_variant	p.Gln160Gln
T/C	13328762	missense_variant	p.Val212Ala
G/T	13328763	synonymous_variant	p.Val212Val
T/A	13328865	missense_variant	p.His246Gln
T/G	13329060	synonymous_variant	p.Val311Val
G/C	13329180	synonymous_variant	p.Thr351Thr
T/C	13329181	missense_variant	p.Ser352Pro
C/T	13329184	stop_gained	p.Gln353*
C/T	13329213	synonymous_variant	p.Ser362Ser
G/A	13329324	synonymous_variant	p.Ser399Ser
T/A	13329335	missense_variant	p.Leu403His
C/T	13329339	synonymous_variant	p.Ser404Ser
G/T	13329344	missense_variant	p.Cys406Phe
G/T	13329492	missense_variant	p.Lys455Asn
G/A	13329690	synonymous_variant	p.Lys521Lys
C/T	13329743	missense_variant	p.Ala539Val
A/G	13329748	missense_variant	p.Lys541Glu
C/T	13329783	synonymous_variant	p.Asn552Asn
T/C	13329784	missense_variant	p.Ser553Pro
C/T	13329801	synonymous_variant	p.Thr558Thr
G/T	13329813	missense_variant	p.Leu562Phe
G/C	13329821	missense_variant	p.Arg565Thr
C/T	13329831	synonymous_variant	p.His568His
G/C	13329840	missense_variant	p.Leu571Phe
C/A	13330074	synonymous_variant	p.Ile649Ile
A/G	13330737	synonymous_variant	p.Glu870Glu
G/A	13330772	missense_variant	p.Gly882Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_24965.1

MNLWPVPFVTIFEVVVFSCLWLQVSSLGSMSSIAVSYGDKGSAFCGLKSDGSHTVNCYGMNSAIIYGTPTHFPFFGLTAGDGFVCGLLMSSSQPYCWGSSGHVEMGVPQPMVKGAQYLEISAGDFHVCGLRKPLTGRHRNTSLVDCWGYNMTNNYVFDGQVQAISAGSQFNCGLFSQNRSVFCWGDETSSQVINMVPKGLRFQKISAGGYHVCGILEGVNSRAVCWGRSLLDLGEELSISLTGSGHGQGKVELAPNDPMLSVVGGKFHACGIKSYDHGVVCWGYSFKAGTRVPSGIKAFEIGAGNYFTCGVLVEKSHMPVCWGVGFPTSLPLPVSPRMCRSTPCPPGYFETSQNGICKSPDSHVCMPCSASCPPEMYKRSGCNLKSDILCEYNCSICSSPECLSNCSSSYSNAASGKRSERFWSLQLPVIIAEIAFAVFFVCIVSITAVLYVRYKLRDCQCSSTARGSKGKKLRGSSSHQKEKSKVRPDLEEFKIRRAQMFPYEELERATGGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVYPNVQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGNKVMKEQMDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWAVPLIKSGDIGSILDPVLKAPSDVDALRRIANVACKSVRMKGKDRPSMDKVTTVLERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSASESTDVEDQRFEFRAPSWITFPSVTSSQRRSGSEADVEGKNVEGRNLGNVGGGGGGGGGGGDALKSLEEEIGLASPREKLFLQHNF*

CDS Sequence:
>Vu_24965.1

ATGAACCTATGGCCAGTTCCATTTGTTACTATATTTGAGGTTGTGGTTTTCTCATGCTTGTGGTTGCAAGTTTCAAGTCTTGGCTCCATGTCTTCCATTGCCGTCTCTTACGGCGACAAAGGGTCCGCGTTTTGTGGCTTGAAATCGGATGGATCTCACACTGTAAACTGTTACGGGATGAACTCAGCCATAATTTATGGAACACCAACACATTTTCCGTTCTTTGGTCTGACAGCCGGTGATGGGTTTGTGTGCGGGCTTTTGATGAGTTCTAGTCAACCATATTGCTGGGGTAGCAGTGGCCATGTTGAAATGGGTGTGCCACAACCTATGGTTAAGGGAGCTCAGTACCTAGAGATCAGTGCCGGGGATTTTCACGTTTGTGGATTGAGGAAACCATTGACTGGAAGACACAGGAACACTTCTTTGGTTGATTGTTGGGGCTACAACATGACAAATAACTATGTGTTTGATGGGCAGGTTCAAGCAATCTCAGCTGGCTCTCAGTTCAATTGTGGCTTGTTTTCTCAGAACAGAAGTGTGTTCTGCTGGGGGGACGAGACAAGTAGCCAAGTTATTAATATGGTCCCTAAGGGCTTGAGGTTTCAGAAGATCTCTGCTGGAGGGTACCATGTGTGTGGAATCTTGGAAGGGGTGAATTCTAGAGCAGTTTGTTGGGGGAGGAGCTTGCTGGATTTGGGTGAAGAACTTTCAATTTCATTGACAGGTTCAGGACATGGACAAGGTAAAGTTGAATTGGCTCCCAATGATCCCATGCTTTCAGTGGTGGGAGGGAAGTTCCATGCATGTGGGATTAAGAGCTATGATCATGGAGTGGTTTGTTGGGGCTATAGTTTCAAAGCAGGCACCAGAGTTCCTAGTGGGATTAAGGCCTTTGAGATTGGTGCTGGGAATTACTTTACCTGTGGAGTTCTTGTTGAGAAATCTCATATGCCTGTGTGTTGGGGTGTTGGCTTCCCCACTTCTCTCCCTTTGCCTGTCTCACCAAGAATGTGTAGGTCTACTCCATGTCCTCCAGGTTACTTTGAAACGTCACAAAATGGTATATGCAAGTCACCAGATTCCCATGTTTGCATGCCATGCAGTGCTTCTTGTCCTCCTGAGATGTACAAGAGAAGTGGATGCAATTTGAAATCTGACATACTATGTGAATATAACTGTTCTATCTGTTCCTCGCCTGAATGCCTCTCCAATTGCTCCTCTTCCTATTCCAATGCTGCCTCTGGCAAGAGAAGTGAAAGATTTTGGTCACTTCAACTGCCCGTGATTATTGCAGAGATAGCTTTTGCTGTTTTCTTTGTTTGTATTGTGTCCATAACTGCGGTGTTGTATGTTCGCTACAAGCTAAGAGATTGTCAGTGTTCTTCTACAGCAAGAGGGTCAAAGGGGAAGAAACTAAGAGGGAGTTCGTCACACCAGAAGGAGAAATCCAAGGTCCGACCAGACTTGGAGGAGTTCAAGATTAGGAGAGCACAGATGTTCCCGTACGAGGAACTTGAAAGAGCAACCGGTGGATTCAAAGAGGAGTCCATAGTGGGGAAGGGAAGTTTCTCTTGTGTGTTCAAAGGGGTTCTCAAAGATGGCACTGTTGTTGCTGTTAAAAGGGCCATAGTGTATCCCAACGTGCAGAAGAACTCCAAGGAGTTTCACACCGAGCTTGACTTGCTTTCTAGGCTGAACCACGCACACTTGCTCAATCTACTAGGCTACTGTGAGGAGGGTGGAGAGAGACTCCTTGTCTATGAGTACATGGCTCATGGCTCATTGCATCAACACCTTCATGGCAACAAAGTGATGAAAGAGCAAATGGATTGGGTGAGAAGGGTGACGATTGCAGTGCAAGCAGCTCGTGGAATCGAATATCTGCACGGCTATGCTTGTCCACCGGTGATTCACAGAGACATAAAGTCCTCAAACATTCTCATCGATGAAGAACACAATGCGAGAGTGGCTGATTTTGGTTTGTCCCTGCTTGGTCCTGCAGATAGCAGCTCCCCACTGGCTGAACTACCAGCTGGGACTCTTGGCTATCTTGATCCTGAATACTACAGGCTCCATTACCTCACCACAAAGTCTGATGTATACAGCTTTGGCGTTCTACTGTTGGAGATACTGAGCGGGAGAAAAGCTATTGACATGCAGTATGAAGAAGGGAACATTGTTCAATGGGCAGTGCCTCTGATAAAGTCAGGAGATATAGGTTCAATTCTGGATCCAGTTTTGAAAGCTCCTTCTGATGTTGATGCATTGAGAAGAATAGCTAATGTGGCTTGTAAAAGTGTGAGGATGAAAGGGAAGGATAGGCCTTCAATGGACAAAGTGACAACAGTTTTGGAGAGAGCTCTTGCACAGTTGATGGGGAGTCCTTGCATTGAGCAGCCAATTTTGCCAACTGAGGTGGTTTTGGGAAGCAACAGACTGCACAAAAAATCATCTCAAAGGTCTTCAAACAGGTCAGCCTCAGAAAGCACTGATGTGGAAGATCAGAGGTTTGAGTTCAGAGCACCCTCATGGATCACTTTCCCCAGTGTCACTTCTTCTCAGAGAAGATCAGGCTCGGAGGCTGATGTTGAGGGAAAAAATGTAGAAGGAAGGAATTTGGGCAATGTCGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGCTCTCAAAAGTCTTGAGGAAGAGATTGGTCTTGCTTCTCCACGAGAGAAACTCTTCTTGCAACACAACTTCTGA

Promoter Sequence:
>Vu_24965::LG6:13326128-13328128(+)

TAACGAGTTTATTGTGATTGCATTTTTCTAGATTTTACTTGATCAAACTTTCAAAGAAATATGTATCATATTAATCAAAGACTTGATATAGGCTTTTTATCATTTTCCTCGATAATTAGTTTTTTAATCGTGTTAATGTTTTATTTTTTAAAAATATCTATTGATTCTCATCCTCAAATTTATTTGTTTTTTTTAAATCTTAATGTAGAAATCTTGATTGGGTACTTTCTTTATAAATGATAGTTTCGAAAACTCCCCCACAAAAATATTTTTCTAGATATATATTTAACCATCAATCAACAATTTAAAATTGTGATAAAATTCAAACCTGTTAATTGGATAATCAAATAGATATTTAACGAAAATATATAATTAATTATAAATATCAACATTGATCTTATAATTAATGCGCATTATTATACTCTACTTTAACCTTTGAAGTGTATTCCTCTCATCCTAAAGGAGTCAAATTCTTGACTCACCAATTTGATTAGAGTCTTCAAACTATATCGGTCAAAGTATTAAAAATATTTAATTAAAAACGTAATCGTTACTATATGTTAATTTATTTTTAAAAACATCTCATTTCATGTTTTATTTATTTTGAGAAACTCTTAACAAATACACTGATCAAATAATAATTTTTTTAAAAAATAATTATTAAGATATACTTAATCATGAAATAACAATTAATTTTAGAGATAATATCCAATAATTTCAGATACTTTAGAAATTGAGATAAAAAATATTCTACTTTCTTTCATTCTTAATCGTTTAGAAGTAAAAGTCAACTATTTTATTTTTTAAAAATAAAATCGTAAAGATCATGCTCTCAAACAAACAATATCGATAATCTTGAAATATCACTCGATAAACTTAAAATTAAAACAAAAACTAAAAACTATTAACATTTAAAATAATCTCTATTATAAAACAAAAATTATATAATATTACTTACCAAAATTTTAATAATTTATGATCTAAAATAATATCTAATTTTAAATTAAAGATCAAAATTATAATTTTTTATGTATAATAAAAATTATTTAAATATTAATATTTTTTAGTAACTAATTATTTTGTTATCTATTGTAATGATCGATTTACATTTTCATCCTACCAAAAAAAAATGTACTTTATATATTACACCAAAAAGAATGACAAAATGCATGAGGAAGTTTGCTACACAGATAAGAGTGGTGCATGGTGAAAAATAAACGCACGAAGGCATGGAATAAAGAATTGAAATGATAAATATTTTTGGGGAAAGGATTGTTCTTGTTCCCATGGGATGATAAATATAGCTCTGTTAACGAAAATAAAATTCAGGAAAACTTCGAATGGAAAGATCAAAAAGCATTAACTGTGTTATTTAATGCCTTCACCTACATTTCCACATATTCAGAAGTAGCAGTTTTGTGTCATTTAATGCATCTTCTTTCCCTCACTCTCTCTTCTCTTCTCTTCTTCTTGCAACCTCCAAAAATACCTTCAATTCTTGATCTATTATGACCGTTTCTTCATTTCATGTCAGTTTTCAAAACACAACATGGAGCTGCTTTTTCTTCTGCTAATTTTTTCTCACTCACCAAACAACAAAAGCATAGCATCTTCTCTGTTGTAAGAATCAAAAGTGGACAAAAGATCCAGTCAAACTCCTTGCCATTTGTGCTGCTGATTGTTGCTTACTCATGCATACAAACCCACAATCAAGATTCTGATTTTTCTACCAGCAATGGCCTTGTTCCACTGGTTATTTTATGACCCCTCCACTCTTTTTTCATTTTTTGGGGTCTCTTCTTGCATTGCATCCATGGAACTGTGAAAAACCATGAGGTAACGATGCTTTTTTATAGTTATATTGGACTTGATTCTCTCCTTTTAAACCGTGTTTCTTGCTGAGTGATCAAAAGGTGTTTCCAACTGACATCATTAGCGAGGATTCTACTTTTTTTGAACAATATCCAGTGTCTCGGTTCTTCATTTCTGCACTTTGAACA

Gene Sequence:

>Vu_24965(+)