Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_24962	LG6	13308782	13313286	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	seed maturation, chromatin organization, cellular component assembly, seed maturation, seed maturation, cellular component assembly, seed maturation
Cellular Component	located in	nucleus
Molecular Function	enables	molecular_function

SNP	Position	Effect	Amino acid change
T/C	13308804	5_prime_UTR_premature_start_codon_gain_variant
C/T	13308817	5_prime_UTR_premature_start_codon_gain_variant
C/T	13308833	5_prime_UTR_premature_start_codon_gain_variant
A/C	13308880	5_prime_UTR_variant
C/T	13308925	5_prime_UTR_premature_start_codon_gain_variant
G/T	13308944	upstream_gene_variant
G/A	13309047	upstream_gene_variant
A/T	13309165	upstream_gene_variant
G/T	13309176	upstream_gene_variant
T/A	13309280	5_prime_UTR_variant
T/C	13309438	5_prime_UTR_variant
G/C	13309454	5_prime_UTR_variant
T/C	13309580	5_prime_UTR_premature_start_codon_gain_variant
G/C	13309589	5_prime_UTR_variant
A/T	13309626	5_prime_UTR_variant
A/G	13309720	5_prime_UTR_variant
A/T	13309729	5_prime_UTR_variant
T/A	13309775	5_prime_UTR_premature_start_codon_gain_variant
C/T	13309865	5_prime_UTR_premature_start_codon_gain_variant
G/A	13309867	5_prime_UTR_variant
C/A	13309937	5_prime_UTR_variant
A/T	13310056	5_prime_UTR_variant
C/A	13310093	5_prime_UTR_variant
A/G	13310183	5_prime_UTR_variant
C/G	13310253	5_prime_UTR_variant
G/T	13310520	5_prime_UTR_variant
C/A	13310606	5_prime_UTR_variant
T/C	13310649	upstream_gene_variant
T/G	13310650	upstream_gene_variant
T/C	13310702	upstream_gene_variant
C/T	13310788	upstream_gene_variant
T/A	13310814	upstream_gene_variant
A/G	13310933	upstream_gene_variant
C/A	13310940	upstream_gene_variant
G/T	13311021	downstream_gene_variant
A/C	13311270	splice_region_variant&intron_variant
T/C	13311398	synonymous_variant	p.Cys39Cys
T/C	13311431	synonymous_variant	p.Pro50Pro
C/A	13311552	synonymous_variant	p.Arg91Arg
A/G	13311677	synonymous_variant	p.Pro132Pro
C/A	13311919	downstream_gene_variant
C/T	13311924	downstream_gene_variant
C/G	13311932	downstream_gene_variant
C/A	13311939	downstream_gene_variant
G/C	13312078	downstream_gene_variant
A/C	13312225	downstream_gene_variant
A/T	13312269	downstream_gene_variant
C/T	13312282	downstream_gene_variant
C/A	13312298	downstream_gene_variant
T/G	13312423	downstream_gene_variant
A/T	13312493	downstream_gene_variant
A/G	13312613	downstream_gene_variant
T/C	13312639	downstream_gene_variant
A/G	13312706	downstream_gene_variant
A/T	13312752	downstream_gene_variant
T/C	13312779	synonymous_variant	p.Asp188Asp
T/C	13312917	synonymous_variant	p.Val234Val
G/T	13312954	stop_gained	p.Glu247*
A/G	13313026	3_prime_UTR_variant
T/A	13313029	3_prime_UTR_variant
G/A	13313061	3_prime_UTR_variant
G/C	13313127	3_prime_UTR_variant
C/T	13313156	3_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_24962.2

MDHESGQGFDSDDSDLEMQAEISEKHQKIDEFSKDLELCGSEDEKFVELPATEIPTDIEAVEPFIGMEFNSREEAREFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDRVLPPPPATREGCQAMIRLALRDGGKWVVTKFVKEHNHKLMSPSKVPWRGSGKHLVSEDEKDRRIRELSLELYNERQKCKRRCAAYEEQLNIILNDLEKHTEHISEKVAAVVRSIREIEEEKSDSDGG*

>Vu_24962.1

CDS Sequence:
>Vu_24962.2

ATGGATCACGAATCTGGCCAAGGATTTGACTCGGATGATAGTGACCTTGAAATGCAAGCAGAAATTAGTGAGAAACACCAGAAAATAGATGAATTTTCAAAAGACCTAGAATTATGTGGAAGTGAAGATGAGAAGTTTGTCGAACTACCTGCAACAGAGATTCCAACAGATATAGAAGCTGTTGAACCATTCATAGGCATGGAGTTCAATTCAAGAGAGGAAGCGAGAGAATTCTACATTGCCTATGGTAGGCGAATAGGGTTTACGGTACGAATACACCACAACCGTCGTTCACGAGTAAATAACCAAGTTATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGCTTTCGTGCAAAAAAGTATGTACACAGAAAAGATAGGGTGCTGCCTCCGCCACCAGCCACTCGTGAAGGTTGTCAAGCCATGATAAGGCTGGCTTTACGGGATGGAGGGAAGTGGGTTGTCACCAAATTTGTAAAGGAGCATAATCATAAGCTAATGAGTCCCAGTAAAGTTCCATGGCGAGGATCTGGGAAGCACTTGGTTAGCGAGGATGAGAAGGATAGGAGAATCCGTGAGCTATCACTTGAGTTGTACAATGAAAGGCAAAAGTGCAAACGACGTTGTGCTGCATATGAAGAGCAGTTAAATATAATTCTGAATGATTTAGAGAAGCACACCGAACATATTTCTGAAAAAGTTGCTGCTGTAGTACGAAGTATTAGAGAGATTGAGGAGGAAAAATCAGATTCAGATGGTGGGTAA

>Vu_24962.1

Promoter Sequence:
>Vu_24962::LG6:13306782-13308782(+)

ATAATTTTTATTATCTCCTAATGGTTTTGATAAGTTTAATATCAGTATAATTTTTGCTTAGATCCTTAGAGTATTTTCAATTTTATTATATTTTTACTTATAAACAGTATATTAAATTGTTTTTGGATATTCATTTCTTTTTTCTATTTTTATTTATTATCTATTATTATAATGAAAAATATAATTTTGAGATTTTTTTATGTGATTATTTTTACTTTTTAAATTATTATAATTTTACCACTGCAATTATATAAAGACGTTTAATTTATTATAATACAATAATATAATATTTATGAATCAGATTTATCACCATTCAACTTAAATTTTTTCTTCTTATCACTGTTTTGGTTAGACATCTTTTGTGTAAACATGTTTAAATGGTATATTCAATTTTAGTGAATCAAATAAATTTTAAGTTTCACATTTAATTATTTTACTATTTTTTTATATAAATAATAATTTTGTACTCTCGATTAAGTGCTTAATGGTGTAATATAAATATCTTCATTATTTAATTTATAATATAAAACAAATATCTTCTTTATTTTCTATGATATAAAAAAAATGAAAATGTAATGTTTTAACATTAACTATTTGATAATATTATTTTTATTTTTATAATTTTTATTTACTACAAAAATTAATAAATTGATATTAAAATAAAAAAAACAAATACACATAGAATATATTTATTGTACAAAAAAATTAAAGATGGGAAATTAATTTAAATATAAGAATAAAAAAGTGATATATTTTTACTTTAGAAACAAACATGGATAATGAAATTTGTGTATATTCCATCAATTATCCATACTTTTAAATCTTTTATTATGGTCGGATGACCCTATATGGCAAGAAAGGACGAACGACCCAACTTAGTAAATACTCGAGATGGAACTAAAACAAACTTAGAACTCGTTCGGCCTGCTATGAATAAAAGCCGAATGACCAATCTCAATAACATTCTTACTAAAAAGACATTAAGAAAAAAATTTAAACATAAGTATTAATTAGTATAATAGGTTAAGATTGGACCGTCACTAAGATTCTGTTAATCTTAGGCTAACCTTAAAAATTATAAATAAAGAAGTGGGTGATCCAACTTATTGTGTATTTAAGACGGTTGCTCTAACCCTGAACACAGACTATTTATTTACTGACTTAAGTATTGAAATACCTTTGACAAATACTTCCCGTAATTGAAACGAAAATAGGATAGAGTCACAATTACGACTTTTAAAAGAAAATGGTGAAAATATTTATAGAAATTACTTTACCCTATACACGAAACAAAAATAATTTGTTGATAAAGATGTTTATCTTGTAAAAGGAATATTTTCCTTCTATTAAGGAAAACAAAACTATACATCAAAGTTTGTCCCAACCGAACATGATATATTTATAAGATTAAATTACGTAATTTTTTTACTAAATTACATGTTTTTTTATCAAGGGGATTTAGTTGTTATAACACTTAAGTTACTGAATTTTATGCACTTAATATTCTTTTAAAAATTGTTAACATATAATTTCTAAACACAAGTTATTAATTAAAACCTTACCATCATCAAATTCCATCGACAATCGCAAATTATTAAAATTTGTCCTTATATACTTATTTCTATCAGTTAGCATAATAATTAATTTTTATAATTTTATTTATTATATAGACATGATTTTAAATAATATAATTTTCATACTAGTTATATGTTTGTTCTTTAATTTACTCGTGCATATAATTTTGCTTGCTTTTTAAAATTATATTTAAATTTAATTTTTATATTCGCAGTGCATACAATAATTATTAAACAAGAGGAGTAAAGAATGTTAGCTCAGGTGACCGGAAAAAGTTGTGAAAGGGTCGTGTGGGGGTAAAGAGGTCATTTACAGATGTAGGTGGGTCTTTAAATAGTAGTCAGGTGGTGGAAATAATAATTTGAACTGTCCCTATTTATTTTTTAATTTTGAAATAAATAAATGACACCTGCGAGCGTGTACTG

Gene Sequence:

>Vu_24962(+)

GCATCAGTCCGTGGTGTCACTGTTGGTCATGCGTCCGTACATCAATGGTGACTGAGTGTTTGCGACTCTTTGGGATTCGGAGAGACCCAAATTGATAAACCCGACCCGATCCAAATTAACCACTCTAGGTTGGCGGACCTAATCGGAGGAGGGGTAAGTAAGGCTTCTTCAACCTTTTCTTCCCCGTGTCATTTTTCTGCTCCGAATTTGTATTCATCAAGAAAACCAACTTTTTTTTTTCTAGAACTCGTGCTTTGAATTTTTCGGCTATTTAGAAACATTCCATCAGGAAATACTAGTTTTTGTGAGCAGTCAATTTGACAGACAATTCAGAATTTAGATGGGGGGTTCATGGTTGAAAGGGAAACTGTAATGCAATGTTAATAACTTGCATGTTCTTCTTGCAGGTTTTACAGTAAAATGTTGAAATCTGGCTGATTTTATCTCGGTTAGTTCTTGTGCTGGACAGGTAGTAAGCTGTTGTCTTCATCTTCTCGATTTTTTGAAAAATTCTATATATATTCTTAGTTAATGAAATTTAGCATGCTCTTGTTTGTTTACTTATACAAAGTAATAATAGTTAGATTCATCAATGTACTTTCTTAATATACACTCATCCCGTGTCCGAGATTATTTTTAGTCTAGGGTTTGACAGGTATCTTATCTAGATTGGGATCTTTGTTAGTGAAATATGTATCTCTATTCGCTTATAAGCTCTAATTAAGGCTACTAATATCTTATATTCATTCAATAATTTTGAATAAATAGGATGGACAATATCCACATATAGTCTATATTTTGTTGTTAGCACCAAGCATACTAGATTTGAAGCTTGGATAAAAAAACTGAGTGTATGCTTATTCAGTAAGAGCTTATCACCTCAGGGATGATGTTACGAACCCAAAGGCCACAATAGCGATTAACAAAGAAAATAGATCAATTATGGAAAACAAGGTCTATATTATTTCTGAAAACCGTAGGAACTTCAGGGGATTGAACTTTCACGCTGCCACTGAGCTAAGCTCCTTCAGAGAACCTAAGTTCTCTGCCCATAAAGAACTATTAGATTCTACTCGAAGCCCTCTGTCCCTTCATTTCACATAGTCTAGCGCCTAATGGCCTTGGGAAGTTGAGGTGCAAACTGCACATTTGAACCGAAATTCATTTTATGAGGACTCAACTTGTGATTGCTCAATCCAATGAGATTACTTTGATAGGTTAATGTTACAAGCGCTCCTTCTAGCTCCTTTAGATAATGTTTGACCCAACTTCTTATACGCTTCTCTTCTTTCTAATGGGAAAGTTAGGCTGCAGACAAATTAAGAATATCTATAAAAACTAAAAGTAGTTTTTTTTTTATGATTGGTAAGTTGAAATCGGAAAGTAGAGTATAACTGGAGGAGCTTCTTCTAAGGAGATAGGAAGTCAAACAGGAATAAGGTCAAATACTAACTTCACTTGTTTTTATAAACTAAACAAAGCTTGAAGGAGGATTAATTATTATTTTCACAAGCTTTGTCAAACTCCTCATATTATAAGAAATCCTTCATAGAAACTCTTTCAAATTCTCCTTGGATTTTTTGTTGTTTTCTTTTCTGGTTGAACGTTATTATCAGTATTTATGGTTAGATAATCAAATAGCTATTGTTTGTCTAAAACTTTTATGTTAAGGCGTAGACTCTTATGAGTTAACAATAATGTGTTGAGAAAATGAGTTAACTTGCCAAATTCTTTTTTGGAGAATCTTGGTAAACTTGCAGAACTATGAATATTGTATAAACTCTCAAGTCAAGAAGCAATTTAGCGGCATTGAAATCAAATTTCCCCTCATTGAATCCAAGGTCAGTGTTGTATGCTATGACTGTTTTTGAAGGCAACATATAGTAAAATTTTAATATGACTTAAATGATGTAAAGAAAATAACTCTTTTTGAAATGTTTTCACTTTAAGAACTAATGTTTTTATGAATTTATATATGATTTGGTCATGTGTATTTTGACCTTCTTCAATAATGACGTACTGTCTCACTGGTTTGTTACTTTGTTTTATTATGGAATTGAAATGTTACATGATTGTTGTGTCAAGAGTACTAAAGTTATGCATATGCTGTTAGGGAACTAATTGTATCTAGTAGAAGAAGAAACATTACCCAGCCTAACTGCCTGGCAGTTAGGTAAGTCAGTATAAAAGGGGTGGGTTGGTTGGTGAGAGGGGGAGTCTTTGAGTGTTATTGTTTGGCGGGAACTCTTGTAGTTCTTTGGAGGGAGGTTAAGCTCTCTGGTTACGTTGTAACACCATTCTTACTGATTCATTTTCAATAAAAGGAGGCTGTATAATTCAGATATATTGTCTTTGTGTGTATTCGAGTGTTTTTCCATAGGTTCTTGATCCAAGAACCTATCATATGCCATGGATTTTTTTAATATATTTTTATATTAGGTAAACTGGTTTGGAAGAATAATCTAATTATTTTGAGTAATTCTTCTGCAATAGTGAGGCTATGGATCACGAATCTGGCCAAGGATTTGACTCGGATGATAGTGACCTTGAAATGCAAGCAGAAATTAGTGAGAAACACCAGAAAATAGATGAATTTTCAAAAGACCTAGAATTATGTGGAAGTGAAGATGAGAAGTTTGTCGAACTACCTGCAACAGAGATTCCAACAGATATAGAAGCTGTTGAACCATTCATAGGCATGGAGTTCAATTCAAGAGAGGAAGCGAGAGAATTCTACATTGCCTATGGTAGGCGAATAGGGTTTACGGTACGAATACACCACAACCGTCGTTCACGAGTAAATAACCAAGTTATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGCTTTCGTGCAAAAAAGTATGTACACAGAAAAGATAGGGTGCTGCCTCCGCCACCAGCCACTCGTGAAGGTTGTCAAGCCATGATAAGGCTGGCTTTACGGGATGGAGGGAAGTGGGTTGTCACCAAATTTGTAAAGGAGCATAATCATAAGCTAATGAGTCCCAGTAAAGTTCCATGGCGAGGATCTGGGAAGCACTTGGTTAGCGAGGTATGTCTTTCCTTGGCAATGACAAATGTGACTAGATGATTCTTAAGAAGAGTGATTTGTGATCTATAGTTGAATGCACAGTTCCCAAATCCTTTTTTCTTTGTTCTTTGTTATTCTGTTGTCGTCAAACGGATGAAATCCAAAAAGGTCAGTCAAACAGTGCACTTTTAATGAACAATTTAAGTATGTTTTGATTGAACTGATAAGATCTTCACTCCTAGTGTCGTGGTTTGACATCAGTTTTGGGGGGATTGAAATAGACATATTAAGATAAGCTTGTCTAACAAAATGCAAGTAAATTCTTAATTTTGGGTTGAAATTGCGAGTGCCAATTACTATAGTCCCTGAGTTTGCAAAACATTTATCACTTTGGTCTGTTATGTCTCGGCCTAAACCATTTTCTCATATTTTGCTGCCTTTTTACTGGTGTCTCTGATTTTATCTATATCTTCCACCGGCCCAAGCAAAACCTTCCTGTTAGCATTCCTGTCATGCAGGCTTTTAGTTATTTGAAGGCAGTGTTTACCATTGATTCTCCTAAACATCTTCCAGTATGTTCCTTAGACCATAAGGGAGTTCTGTCAGTCTTTCATCAGGAAGATATGATAATCGGTAAATGAGATATGTCAGTAACTTTTAACAAACTATTTTGATTAAAAATTATTAAAGAAAGCTTTTTTAGGTCCCACTTTTTTTTCAAAAAATAAATGAGTCAAACCATAATTTTGTAGTTTTCATAAATTTTAACCAATAATTGAGTGTCTTGCTACTCTCCTCTTAGTAAATTATTACATGACATTGACCGTTATTGAGAAAGAGAAAAAATGGAAGAAAATAGCTGTGAATCTGATTGATTAAATTGTTGAATAACAATGAAAGCACATCTCAAGCTACTTGGATAAGTTTTTTGATGATTTCATTGTTAGTGCCGCAGGATGAGAAGGATAGGAGAATCCGTGAGCTATCACTTGAGTTGTACAATGAAAGGCAAAAGTGCAAACGACGTTGTGCTGCATATGAAGAGCAGTTAAATATAATTCTGAATGATTTAGAGAAGCACACCGAACATATTTCTGAAAAAGTTGCTGCTGTAGTACGAAGTATTAGAGAGATTGAGGAGGAAAAATCAGATTCAGATGGTGGGTAATTAGTGCTATTATAGCCTGTTTCCTCATTGGAGACATCCTGGTTGAGATTGTCAAAGCGTCTTCTAGACATTGAAGGCTAGCATTATTCTGTCGGCATTTAGATGCGATTTGCTTGAAGTAGTGTGTTTGATCATGTACCGTTCAAGTTAAACTTCAGGCACCATATAGTTTACTCGGAAATTCATTTTCTGGTGTTCACCATTTCGTGGATTATGTTGGTTCTCAAATTATAATTTGTACATGATTTATTACTCTTGCCCAAAAGCAGTGAGTATAACTTAGCCATTTCATTCTTCCTTTTGACT