People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24922 LG6 12930548 12931894 PREDICTED: uncharacterized protein LOC108334157 isoform X1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 12930614 missense_variant p.Asp427Glu
A/C 12931036 missense_variant p.Leu287Val
C/T 12931037 synonymous_variant p.Glu286Glu
A/T 12931043 missense_variant p.Asp284Glu
G/A 12931216 synonymous_variant p.Leu227Leu
G/T 12931217 synonymous_variant p.Ile226Ile
C/T 12931223 synonymous_variant p.Arg224Arg
T/A 12931225 missense_variant p.Arg224Trp
A/T 12931722 missense_variant p.Leu58Gln
T/C 12931838 synonymous_variant p.Leu19Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24922.1
MNSSGLGGGFLSGPSGAILDLESSFHRHQQTQLGHPSITGQQHLNIMGGLESDHPIGLIEVKNLNAGLNFGKGKAIAPSNSNELSEEDEPSYAEEGNCENLDGGKSKKGSPWQRMKWTDNVVRLLITVVSCVGDDGTIGGMDGHKRKSVVLQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTCCQVVENPALMDSIPNLSTKMKDDVRKILSSKHLFYKEMCAYHNGQRIPNCHELDLQGYSMEHGKDSRRENNASEDEDEDHNDSEDDELEDEININAHEDGGRMQEQCDRNILSEEDGHFGPQTSRMDKFEVEMARVFQDPGKSLREQREWIKIQMLQLQEQNISYQAQALELEKQRLKWLRYCSKKDRELERLRLENKRMKLENERRILKLKQKELETDFSTSEMSLDPASIGIHRPQGREHISLGRQL*


CDS Sequence:
>Vu_24922.1
ATGAATAGTTCGGGTTTGGGTGGTGGCTTTTTGTCTGGTCCCAGCGGGGCGATTTTAGACTTGGAATCTTCATTTCATAGACATCAACAGACTCAACTTGGTCATCCATCTATTACTGGTCAACAGCACTTGAATATCATGGGTGGTCTCGAAAGTGATCACCCCATTGGCCTAATTGAAGTGAAAAATTTGAATGCCGGGTTGAATTTTGGTAAAGGAAAGGCAATTGCTCCTTCCAATAGTAATGAGTTGAGTGAGGAGGATGAACCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCTGGATGGTGGGAAGAGCAAAAAGGGATCTCCTTGGCAGCGAATGAAGTGGACAGATAATGTGGTTAGGCTTCTTATAACAGTGGTGAGTTGTGTCGGTGATGATGGCACTATTGGGGGCATGGATGGTCATAAAAGGAAATCTGTGGTTTTGCAGAAGAAAGGCAAGTGGAAAACAGTCTCCAAGATAATGATAAGCAAGGGTTGCCATGTGTCTCCACAGCAGTGTGAGGACAAGTTCAACGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCTGCATTAATGGATTCAATACCTAACCTGTCAACTAAGATGAAGGATGACGTTAGGAAGATCCTGAGCTCAAAACACTTGTTTTATAAGGAGATGTGTGCCTACCATAATGGGCAAAGAATACCAAATTGTCATGAACTTGATTTACAGGGTTATTCTATGGAGCATGGGAAGGACTCAAGAAGAGAAAATAATGCATCTGAGGATGAAGATGAAGATCACAATGATAGCGAGGATGATGAGTTGGAAGATGAAATTAATATTAATGCACACGAGGATGGAGGGAGGATGCAGGAACAATGTGATAGAAATATATTAAGTGAGGAGGATGGCCATTTTGGCCCACAAACTTCTCGGATGGACAAATTTGAGGTTGAAATGGCAAGAGTTTTTCAAGACCCCGGAAAGTCATTACGCGAACAAAGAGAGTGGATTAAAATCCAGATGTTGCAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAGCTCTTGAACTTGAGAAACAGCGGCTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGAGAGCTGGAGAGACTGAGATTGGAGAACAAAAGAATGAAATTAGAAAATGAGCGCAGGATCTTGAAACTGAAACAAAAAGAGCTAGAGACAGATTTCAGTACATCTGAAATGTCTTTAGACCCTGCCTCTATAGGAATCCACCGGCCGCAGGGGAGGGAGCATATCAGCTTAGGCAGACAACTGTAG


Promoter Sequence:
>Vu_24922::LG6:12931894-12933894(-)
TTAGAAGTAAAAAAATAAATCATGGAGGTACATGGAGAAACTCTCTCAACTCTTTAATTTTTTTATCCACCATCAACCATCTTTTATTAGTGCATTTCTCCATAAATTTTAAAATTTTCATTTTATCCCTTCTCATTTTCAATTTCAAACTATACATATCAAAATATTTCAAAAACATGACTAGAATATAAAATATTATATTTTGGATTGTACAATCCAAAATACAAAAAAAAAAAAAAACATTCTTAATTGTATAATCCGAAATATGATTTTTAAAGTTCATGTTGATGTTTGTAAAGCAACAATTATTATGTCAAATGTTTGGTCCTCTTTCATATGAATATGAATATTATTTCTTTTTTAGTCTTTTATAGTTTTTTGATCAACTAGTGATTATTTAGAATCATAGAGAAGTGATAATGTTGCTTGTTGCACTTTTGTAAATATATGCACTTTAAAATTTTTTATATATTTTGAGAAAAAAATCATTGTACTAATAAAATAACTAATTTAATTTTGATTCATAATAAACAACACAAGTAGTTAATGTTTTACTTCCATGTTTATTTATATTTTTTCTTAATTTATCTATGTAAAATGTAATTTATTCTGTTATATATGTTATTTATCATATGTAAAACCAACTTTCTGTTATATATGTTATTAAAAATTTATTCTGTTAACATAACCAAACTATTTTTTAATTAGTCTAATATAAAATTCTTTTAATCATCATTTATTAGGAATTAAATAATTTTATTGTGGAGAATGTTAAAATTATTGTTTGATTGGTAAAATGATTTCTTTTACTATGACATTTTTATTTTATTTTTAGAGAATATCTTTTGATAATGTGATCAGGATGGAAGAATAATTTTTATATTAATCTATTTACAGTTTTAATATTTAGTAGTAAATGAAATAATTTGTACTAACAATAAAATTATGTTAAAATAAATTATTTTATTTGATCAGTAAATTTTATTTAGGATGACATTTTTTTTAATTTGTATGACATATTTTTTTGTTAACGTTGTGATGTCATAAGTGTGGAAGAATAATTTTTTTATATATTATAGTTTTAGTACTTAACAGTAAATGAAATAATTTGTGCCAACAATAAAATTTTTTGATAATAAAATATTTAAAAATGTAAATAATTCAAATTCAATATATATATATATATATATATTGCTCTTAAATTTAGATTAAATGTGTCTGAAGAAATTCCAGACAAATTTTTATGTTACTTGTTACTGAATTATTTTTATTTTGTAGTAAGATAAATATTTATCTACTATTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTCAGGATAAGGTAAAATATTTATTAAACATGGTGGACAAATAATGCTTTTGAAGAAATAGCCAGCAAAATTAGAGAAATCTGCTGCTGAGTAAGAAAGATTTATCTCATCCTAATGTTGAACTGTTGAGGTGAAAGAGATGACAGAAACAGTGAAATTGGTTCCCCTTTATCAAAACAGGGGAAAGCTCCCTCTTTTTTGTCTTTTTCTTTTGCTGCTGCTACTGTGCTACTGATCTTCGCTCACCAATAGGTAAGCCAAAACAAGATCTGTAATCAATATCAGAGGTTGTCATCAATTTTGGTTCTAATCCCAGTGAATATCAGAGTATATTTCTATGTAGGGGTTTAGATTTGAACACATGGGTATATGTTCTTATCACAACATATTAAGCTTCTCATGATTATTTTTAGTTAATGTTCGTTAATTGCCTATACGTGGATTCCATGAGCTTTATTTTATTTTTTAGTTCTGTGAGCAAAAGTTTTGGCTTTCAAGTTTTGTGGTGGTGTTAGGCTTAGTCATCTGGTTGTAAATAAACACTGTTCTGTGCCCGACCCAATTGAGATTTAAGATTTTGTTGTAGTCAGTTTCTGTGTCACCATCTTCTAGAATTAGGGTTTGTGTTTGAGTTCCAAGA


Gene Sequence:
>Vu_24922(-)
ATGAATAGTTCGGGTTTGGGTGGTGGCTTTTTGTCTGGTCCCAGCGGGGCGATTTTAGACTTGGAATCTTCATTTCATAGACATCAACAGACTCAACTTGGTCATCCATCTATTACTGGTCAACAGCACTTGAATATCATGGGTGGTCTCGAAAGTGATCACCCCATTGGCCTAATTGAAGTGAAAAATTTGAATGCCGGGTTGAATTTTGGTAAAGGAAAGGCAATTGCTCCTTCCAATAGTAATGAGTTGAGTGAGGAGGATGAACCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCTGGATGGTGGGAAGAGCAAAAAGGGATCTCCTTGGCAGCGAATGAAGTGGACAGATAATGTGGTTAGGCTTCTTATAACAGTGGTGAGTTGTGTCGGTGATGATGGCACTATTGGGGGCATGGATGGTCATAAAAGGAAATCTGTGGTTTTGCAGAAGAAAGGCAAGTGGAAAACAGTCTCCAAGATAATGATAAGCAAGGGTTGCCATGTGTCTCCACAGCAGTGTGAGGACAAGTTCAACGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCTGCATTAATGGATTCAATACCTAACCTGTCAACTAAGATGAAGGATGACGTTAGGAAGATCCTGAGCTCAAAACACTTGTTTTATAAGGAGATGTGTGCCTACCATAATGGGCAAAGAATACCAAATTGTCATGAACTTGATTTACAGGGTTATTCTATGGAGCATGGGAAGGACTCAAGAAGAGAAAATAATGCATCTGAGGATGAAGATGAAGATCACAATGATAGCGAGGATGATGAGTTGGAAGATGAAATTAATATTAATGCACACGAGGATGGAGGGAGGATGCAGGAACAATGTGATAGAAATATATTAAGTGAGGAGGATGGCCATTTTGGCCCACAAACTTCTCGGATGGACAAATTTGAGGTTGAAATGGCAAGAGTTTTTCAAGACCCCGGAAAGTCATTACGCGAACAAAGAGAGTGGATTAAAATCCAGATGTTGCAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAGCTCTTGAACTTGAGAAACAGCGGCTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGAGAGCTGGAGAGACTGAGATTGGAGAACAAAAGAATGAAATTAGAAAATGAGCGCAGGATCTTGAAACTGAAACAAAAAGAGCTAGAGACAGATTTCAGTACATCTGAAATGTCTTTAGACCCTGCCTCTATAGGAATCCACCGGCCGCAGGGGAGGGAGCATATCAGCTTAGGCAGACAACTGTAG

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322356