Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24888 LG6 12713375 12715692 PREDICTED: scarecrow-like protein 11
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, sequence-specific DNA binding
SNP Position Effect Amino acid change
A/C 12713411 5_prime_UTR_variant
T/A 12713633 5_prime_UTR_variant
A/G 12713634 5_prime_UTR_variant
C/T 12713637 5_prime_UTR_variant
C/A 12713702 missense_variant p.Ser16Tyr
G/A 12713713 missense_variant p.Asp20Asn
T/A 12713760 synonymous_variant p.Ser35Ser
G/A 12713957 missense_variant p.Gly101Asp
C/T 12714268 missense_variant p.Leu205Phe
C/A 12714392 missense_variant p.Pro246Gln
G/T 12714431 missense_variant p.Gly259Val
A/G 12714672 synonymous_variant p.Leu339Leu
C/T 12714993 synonymous_variant p.Val446Val
T/A 12714996 synonymous_variant p.Pro447Pro
G/A 12715002 synonymous_variant p.Glu449Glu
C/T 12715011 synonymous_variant p.Cys452Cys
T/C 12715323 synonymous_variant p.Phe556Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24888.1
MLSTNSLVQNFGGTISVFSDQNQVTEGIELDDSPSSSGTSSSGESTKYSNNILRYISDILMDEEDDLLNKPCMLQECLRLQAAEKSFLDVLVHHSHPSSSGESIGIADSDENFGRTVSFESNGSCVTDHSCDCDLVHGVGEFDSSFLPQQTHLVYSPDVVDAFRVRDGTWNLFQSHTKPFMVEEGRSTSASREKRSHELDDDAGLEQDGRRGAKVSAVFSGESESPEILDEVLLYQIGRSGCSSEPSQGVDLGGSNGKGARSRSKKGSTKAGTAVDLWTLLTQCAQAVASFDQRNANDLLGQINQHSSPFGDGLQRLAHYFAKGLEIRLAAGTPSYVPLEVATAADMLKAYKLFVTSSPLQRMSNYLTTRTVISLVENESSVHVIDFGICYGFQWPCLIKRLSERDGGPPRLRITGIDLPRPGFRPAERVEETGRRLANYCKKFNVPFEYNCLAQKWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVAVNSPRDAVLKLIRKINPNIFLHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEVNVPREDSQRLMFEKGLLGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQVTFDPQLVNYAKQMVKKEHHKDFVVAEDGKWLLQGWKGRILNAISAWTPA*


CDS Sequence:
>Vu_24888.1
ATGCTTTCCACCAATTCTCTTGTGCAAAATTTTGGGGGTACTATCTCTGTGTTTTCGGATCAGAACCAAGTGACGGAGGGGATTGAGTTAGATGATTCACCTTCTTCTTCGGGTACAAGCTCAAGTGGAGAATCGACAAAGTACTCCAACAACATCCTGAGATACATAAGCGACATCCTCATGGACGAGGAAGACGACCTGTTAAACAAACCTTGCATGTTGCAGGAATGTTTGCGACTCCAGGCTGCTGAAAAGTCATTCCTTGATGTCCTTGTCCATCACAGCCACCCTTCTTCCAGTGGTGAAAGCATTGGCATCGCAGATTCTGATGAAAATTTTGGTCGCACTGTTAGTTTTGAGAGCAATGGCAGCTGCGTCACTGATCATTCATGTGACTGTGACTTGGTCCATGGCGTAGGTGAATTTGACTCTTCTTTCTTACCACAGCAAACCCATCTAGTTTATTCCCCAGATGTAGTTGATGCATTTAGGGTTCGTGATGGAACCTGGAATCTCTTTCAGTCTCATACGAAGCCGTTTATGGTGGAAGAGGGTCGTTCAACTTCAGCATCCAGAGAAAAGAGAAGCCATGAGCTGGATGATGATGCTGGTCTTGAACAAGATGGAAGAAGAGGCGCCAAGGTTTCAGCGGTCTTTTCTGGCGAGTCAGAGTCACCAGAGATCTTAGATGAGGTGCTGCTTTATCAAATTGGAAGAAGTGGATGTTCTTCTGAACCATCACAGGGTGTTGATTTAGGAGGGTCCAATGGAAAGGGAGCACGCTCACGTTCAAAGAAGGGGTCCACCAAAGCAGGTACAGCGGTAGATTTATGGACCCTTCTAACTCAATGTGCACAAGCAGTGGCAAGCTTTGACCAAAGGAATGCAAATGACTTACTCGGCCAGATTAATCAACACTCTTCACCTTTTGGGGATGGACTCCAGCGATTGGCTCATTACTTTGCCAAGGGCCTTGAGATAAGGTTGGCTGCTGGGACCCCATCATACGTGCCACTAGAAGTAGCAACTGCTGCTGATATGTTGAAAGCTTACAAACTATTTGTCACATCCTCTCCTTTGCAAAGGATGTCAAATTATTTGACAACCAGGACAGTCATTAGTCTTGTGGAAAATGAGAGCAGTGTTCACGTTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCCTGCCTTATCAAGAGGCTGTCAGAAAGAGATGGTGGTCCTCCAAGGCTGCGTATAACAGGAATTGATCTTCCTCGGCCAGGATTTCGGCCTGCCGAAAGGGTTGAGGAGACAGGGCGGCGTTTGGCAAACTACTGCAAGAAGTTCAATGTCCCTTTTGAGTACAACTGCCTTGCACAGAAATGGGAGACTATAAAACTTGCAGATCTCAAGATAGACAGAAATGAAGTCACCGTTGTTAGCTGTTTCTACCGGCTGAAGAACCTGCCTGATGAAACTGTGGCAGTGAACAGTCCAAGAGATGCTGTGTTAAAGTTGATTAGGAAGATCAATCCAAACATTTTCCTCCATGGGGTGGTCAATGGCACTTATAGTGCTCCTTTTTTCTTGACACGGTTCAGGGAAGCGCTGTACCACTTCTCATCACTGTTTGATATGTTTGAGGTTAATGTGCCACGTGAAGATTCGCAAAGGTTGATGTTTGAGAAAGGGTTGCTTGGAAGGGATGCCATCAATGTTATAGCGTGTGAGGGGGCAGAGAGAGTTGAGAGACCTGAGACTTACAAGCAGTGGCAGGTTAGGAACCTGAGAGCTGGGTTCAAACAAGTTACTTTTGATCCTCAGCTGGTGAATTATGCGAAACAAATGGTGAAGAAGGAACATCACAAAGATTTTGTGGTGGCTGAGGATGGGAAGTGGCTTTTGCAGGGATGGAAAGGGCGAATTCTGAATGCCATTTCTGCTTGGACTCCTGCTTGA


Promoter Sequence:
>Vu_24888::LG6:12711375-12713375(+)
AACTGTTTCGGACATGTGTGAGGTTGAATGTTTATTTAAGCAGACTTTTCTACTTTTTTTTTTCCTTGCTGCTGTGTTAAAAATGTTATAGTGTTTAACTAAGTTTGTTATTTAATCGTTCAATAAATAAAAGTTTTAATTATTATATCTTTTATTTGTATTAATAAATTTTTTATAAGTTTTTAATTAAGAATTTAATCACAATTCAATTTTATTGAATTTCATTACTAAGCTCTTTAACGTAAATAAATGGTTAACTAAATTTGATAGACACCAATCAAATCAGTTTTCTCCTGTTACAATAACCGATCAATTTAAAGTAGTTCGATTGGTATATATACCGGTATATGCATATACACTACAAAAACTATATATTATTTGTGTTTTATTAGGTATTTATATTTAAATTATTAAATATATTTTTTTTCTAAAAAAAATACTTGTTTTGTATTTAAAATAAAAATCTAAACGAATATTTGTTTATTCAATATAATCTTACAACTATTTAAGCTAAACTTTTTAGGAGTTTATTTCGGTTCTACTCAACACGTGAACTTGTAAAATACAAACCAACTTAATTATATTTTTGTAGTTTAGGTTGAATCGTTGAATTGGATTAAGTCTATGTAGTTCATCCAATTAGAATTTAGTTAGTATTACGTTCATGATTTTTAATTTTATATTAAAATTGACCCAATCCCTCTAAATAATTAAAAAATAATTTTACTATGATGTATATATTATAAGCATTATTTATAATTTAATTTAATTTAACTGGGATTTTAAATAAAAAATAATCTAATTAAATTTATTTGGATTTGGTCAAAATTTATATTAAATTATCCAATCCAGATCACTTATATCTTTATTTTTTTTTCTCTTTTTATTTTATAATATGTTATTGCACTTTTTGTTGTTGTTTATCTCTCTTGTGTAAAAAAAATTCTTTGTTGGATGACTTGGGGATCAAGTTTCCCACACGTGCACTTCTGACTACATCGCATATGATACGTGTGAGTTTTTCTTTTATTTGTTAAATACACTTCTACAAGAAAACACCTTAACGCTTGGGCCGTAACTGACTACAACAAAACAAAACATCTAATATTTTGTTTGCTCATGTTCTTTTTTCGTAATTTTTAGTTTTTATTTAATGATGCTCTTTTAATATTATTACTATAATATTTCAATTTTCAATTTTTTTTGTCATGTTTGTTACTTTTTACCTCTTTCAAAGTACATTTTATAGTTTTGATTTTCTTTTTACCCTATTACTCGCTATATTTTGCATTTTTTAAGTTGAAACTTATGTCTGAGCATTTAATCATAAAACTTAATTTGGAAAATTATTAAAAAAATTAAATTTGATTATTAGATATGATTTAAGAAGTACAGATTATTATACATAAATATAAAGAGAGATACTTATTAATTTAATTTTACCATTTTTTCTATTATTATTTGTTACGACTATGATTAAGATCTATTTCGCTTTTTGAAAAAAAGAACAAAGGTATTTCTTAATTATTATAGTTGTAATATAATAATATACTATATTAAATTACTCAATAACATATAATATTACTGAATCAGTAATAGTAGTTGTTGGGATAATTCTAATAATGTCTTTATACATGGTAGTTTTGCTATTCTGCCTTCATGAATTGTGTAAGAATTTCATTTTTTTCAATTTCTAATTTATGTCTATATATATATATATATATATATAAATAATCTTGAATTTTTTTATATGTATAGAAAGTTGCAACAGTGTAAAAATTTCGTGTGAAGCTAATCATACTAAATCATTATAATTAATGTTTAATCTTAAGTTTATCTTATAACGCAAGGGAGAAATACTAGTCTGCATTAAAAATAGTAACAAAAGGTGCTTGGCGGCTTTGACCGTCTTTCACTCCTTCCTTGAAGCTTCCTTTCTACAGACATAATGCATCATTCTATAAACAAATAAGTTCTATATAAGAAAGTTCAAACATACA


Gene Sequence:
>Vu_24888(+)
ATCATTCAACAGTGTCGGTTACACTTCTGCTACAGAAAATTTTGAGTTTACTAGGGTTGGTTTAGATTCATCACAGTCTATACCATAATTATCTTTTTACTCTGATTCACCCTTTCTTATCATGTATCACCAATACTCCTACGGTATTCTTCTCACTTTCTTCATGTGATCCTGTTTCTTCTTCTGTATTAAGTTTACTTCATAGTTTCACTTAGATTCCTAGTCAGATATTTTTAGCTAATTTTCAGATACTTCTAGTATTCATTTTGGTGGAGTACAACATGCTTTCCACCAATTCTCTTGTGCAAAATTTTGGGGGTACTATCTCTGTGTTTTCGGATCAGAACCAAGTGACGGAGGGGATTGAGTTAGATGATTCACCTTCTTCTTCGGGTACAAGCTCAAGTGGAGAATCGACAAAGTACTCCAACAACATCCTGAGATACATAAGCGACATCCTCATGGACGAGGAAGACGACCTGTTAAACAAACCTTGCATGTTGCAGGAATGTTTGCGACTCCAGGCTGCTGAAAAGTCATTCCTTGATGTCCTTGTCCATCACAGCCACCCTTCTTCCAGTGGTGAAAGCATTGGCATCGCAGATTCTGATGAAAATTTTGGTCGCACTGTTAGTTTTGAGAGCAATGGCAGCTGCGTCACTGATCATTCATGTGACTGTGACTTGGTCCATGGCGTAGGTGAATTTGACTCTTCTTTCTTACCACAGCAAACCCATCTAGTTTATTCCCCAGATGTAGTTGATGCATTTAGGGTTCGTGATGGAACCTGGAATCTCTTTCAGTCTCATACGAAGCCGTTTATGGTGGAAGAGGGTCGTTCAACTTCAGCATCCAGAGAAAAGAGAAGCCATGAGCTGGATGATGATGCTGGTCTTGAACAAGATGGAAGAAGAGGCGCCAAGGTTTCAGCGGTCTTTTCTGGCGAGTCAGAGTCACCAGAGATCTTAGATGAGGTGCTGCTTTATCAAATTGGAAGAAGTGGATGTTCTTCTGAACCATCACAGGGTGTTGATTTAGGAGGGTCCAATGGAAAGGGAGCACGCTCACGTTCAAAGAAGGGGTCCACCAAAGCAGGTACAGCGGTAGATTTATGGACCCTTCTAACTCAATGTGCACAAGCAGTGGCAAGCTTTGACCAAAGGAATGCAAATGACTTACTCGGCCAGATTAATCAACACTCTTCACCTTTTGGGGATGGACTCCAGCGATTGGCTCATTACTTTGCCAAGGGCCTTGAGATAAGGTTGGCTGCTGGGACCCCATCATACGTGCCACTAGAAGTAGCAACTGCTGCTGATATGTTGAAAGCTTACAAACTATTTGTCACATCCTCTCCTTTGCAAAGGATGTCAAATTATTTGACAACCAGGACAGTCATTAGTCTTGTGGAAAATGAGAGCAGTGTTCACGTTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCCTGCCTTATCAAGAGGCTGTCAGAAAGAGATGGTGGTCCTCCAAGGCTGCGTATAACAGGAATTGATCTTCCTCGGCCAGGATTTCGGCCTGCCGAAAGGGTTGAGGAGACAGGGCGGCGTTTGGCAAACTACTGCAAGAAGTTCAATGTCCCTTTTGAGTACAACTGCCTTGCACAGAAATGGGAGACTATAAAACTTGCAGATCTCAAGATAGACAGAAATGAAGTCACCGTTGTTAGCTGTTTCTACCGGCTGAAGAACCTGCCTGATGAAACTGTGGCAGTGAACAGTCCAAGAGATGCTGTGTTAAAGTTGATTAGGAAGATCAATCCAAACATTTTCCTCCATGGGGTGGTCAATGGCACTTATAGTGCTCCTTTTTTCTTGACACGGTTCAGGGAAGCGCTGTACCACTTCTCATCACTGTTTGATATGTTTGAGGTTAATGTGCCACGTGAAGATTCGCAAAGGTTGATGTTTGAGAAAGGGTTGCTTGGAAGGGATGCCATCAATGTTATAGCGTGTGAGGGGGCAGAGAGAGTTGAGAGACCTGAGACTTACAAGCAGTGGCAGGTTAGGAACCTGAGAGCTGGGTTCAAACAAGTTACTTTTGATCCTCAGCTGGTGAATTATGCGAAACAAATGGTGAAGAAGGAACATCACAAAGATTTTGTGGTGGCTGAGGATGGGAAGTGGCTTTTGCAGGGATGGAAAGGGCGAATTCTGAATGCCATTTCTGCTTGGACTCCTGCTTGAGAAATGTTCAGAAAATGTTTTGTAACTAGTAAATCTACTCCTATGTCGGTTAAAGAGAATGGAATAAACTACTCTTTGCAACTTCTTTCTCCA