Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24876 LG6 12615915 12618261 "PREDICTED: protein kinase APK1A, chloroplastic-like isoform X2 "
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 12616017 intron_variant
C/A 12616128 intron_variant
T/A 12616152 intron_variant
T/A 12616153 intron_variant
T/G 12616154 intron_variant
T/C 12616188 intron_variant
G/A 12616206 intron_variant
C/G 12616215 intron_variant
T/C 12616217 intron_variant
G/T 12616219 intron_variant
G/C 12616337 intron_variant
T/C 12616368 intron_variant
C/T 12616875 intron_variant
G/A 12616944 intron_variant
C/T 12616951 intron_variant
C/A 12616974 intron_variant
T/A 12617130 synonymous_variant p.Ser135Ser
C/T 12617134 missense_variant p.Pro137Ser
T/A 12617265 intron_variant
A/T 12617274 intron_variant
T/A 12617282 intron_variant
A/G 12617319 missense_variant p.Ile173Met
T/A 12617320 missense_variant p.Phe174Ile
C/A 12617474 intron_variant
A/G 12617669 splice_region_variant&intron_variant
G/A 12617702 intron_variant
A/C 12617725 intron_variant
C/T 12617727 intron_variant
C/T 12617739 intron_variant
G/T 12617741 intron_variant
T/G 12617754 intron_variant
G/A 12617756 intron_variant
T/A 12617763 intron_variant
A/T 12617768 splice_region_variant&intron_variant
T/C 12617778 missense_variant&splice_region_variant p.Ser260Pro
G/T 12617785 missense_variant p.Cys262Phe
G/A 12617870 stop_gained p.Trp290*
A/T 12617889 missense_variant p.Met297Leu
C/T 12617991 missense_variant p.Pro331Ser
G/A 12618002 synonymous_variant p.Ala334Ala
T/A 12618078 stop_lost p.Ter360Lysext*?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24876.1
MGVCLSAQIKAESPYNTGFNSKYVSTDGNYLGSTNEKVSGNSVPLTPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAARGLAFLHSAETKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMISGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFRVLDTRLEGQYSTDDAYKVANLALRCLSIDSKFRPNMDEVVTTLEQLQVHNANGGNQNPSRVRRRSADVSRGYQNPSVNGSRVRRRSADDISRMETPSAYPRPSASPLYT*


CDS Sequence:
>Vu_24876.1
ATGGGAGTTTGTTTGAGTGCCCAAATTAAAGCTGAAAGCCCGTATAACACTGGGTTCAACTCAAAGTATGTGAGTACAGATGGAAATTATCTTGGCAGCACAAACGAAAAGGTATCAGGAAACTCGGTCCCTCTGACTCCTCGGAGCGAGGGTGAGATCTTGCAGTCATCCAATTTGAAGAGCTTTACCTTATCAGAACTTAAGACGGCCACTAGGAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAAGGGTGGATTGATGAGAATTCGTTAACTGCTACAAAACCTGGCACTGGTATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTAAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTGGAAGATGAACACCGCCTTCTTGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGTTCATATTTTCAGCCACTTTCTTGGAGCCTCCGTTTGAAAGTTGCTCTTGATGCTGCCAGAGGGCTTGCCTTTCTACACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAAACTTCAAATATATTGCTGGATTCGAATTACAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACGGGTGACAAAAGCCATGTCTCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTAGAAATGATATCTGGAAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACACAATTTAGTGGAATGGGCTAAACCATACCTGGCAAACAAACGTAAAATATTTCGTGTATTGGACACACGGCTTGAAGGACAATATTCAACGGATGATGCCTATAAAGTGGCCAACCTTGCCTTGCGGTGCCTGTCAATAGATTCCAAGTTCAGGCCAAACATGGATGAAGTGGTCACAACATTGGAGCAGCTGCAGGTTCATAATGCAAATGGAGGCAATCAAAATCCTTCTCGTGTTAGAAGAAGAAGTGCTGATGTAAGTAGAGGCTATCAAAATCCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCTGATGACATTAGCCGCATGGAGACTCCCTCAGCTTATCCCAGGCCCTCTGCATCCCCTCTCTATACATGA


Promoter Sequence:
>Vu_24876::LG6:12613915-12615915(+)
GTAAAGATATGAATATGATTAAAGATTCATTACCTTAATATAAATTTATGGTATGCAACATGTTGATAATATTATAGGAAAAATATATATCGTTTAATATGTTTTATTTTACAACTTATGGGCCATTCTTTTTTTTTTTTGGTATTGTATATATTTGGTTGGGAGCTAACATTCCGGTGTTTTGTAATTACTCATATTACTTATTATTATTATTATTATTATTATTTATTATTATTATTATTATTATTATTATTGTAATATATAGACATAGTAATATATTAAATTGATGAGACGTTATAAAATATAGGGAGATGAAAGTGTATAAAAGTCTATTTCTATCTGTAAAGTAGTTGGCCTATGGCCAATTGTTTGTACTATTAGACATGAAGTGTCGTTTGTGGCAATGAAATGAAGTAATTGTAACCACATATTTTATATGGAAAATATTTCAAGAAAAAAAAATCTCTTGAAATTGACATCACTCAAACACATAGCAGCAATCTAATTCTACATGCTTGTTGCTGCATTTTGTCCATTCATTATGCACCAAACATTATATTTTTTATAATTATGTTTTTATTAAATTGTTTTTTTATACTTTTATTTTATATTTATATGAATGTAATTTTTTTTTTGTTGAAATTTGACATCGAAAGAATTAAAGTCTATATTACTTTGACATTAAATACTTTGAACTTCGACAATACGGTGAAACTAATTTGCAAAAGCATCACAATACAATTTAGGAAGGAGAGTAAGTTATATGATCAAATTGACCAAAAAAATTAAAAGAAAAAATGTGTTTACTAGAAAAATTTAAAAAGGAAAACAATTTTTCCATGCATTATACATTGACTAAGTTAAAAGATTTCTAGCTAATTTAGAAAAAAAAAGACACTTAGAACATGTTGTTTCTTGCACTTTTATTATGCACCATCCATGTCTTAAAATAAAAAATGATTTCATATATTTATGGGTAGCTTTATTAATAATTTTATTTATTTGATGTATTATATGAATTATATAATTTAAGTGATTAATAACTATATTCTCTAGTATAATATGAGTAAATAATTAACAAATAAATACACGTACTCCATTAGCATGTAAATAATTAAATATTTATATCCATTATTTATAAATATTCATTAAAAATATCTATGTTATTTTGCAATCTCTAATCCAGAGGTGTCATTAATACCTTTTATTCATTTATTAAGGAGCACGTGATCACATCTACCTACTTCTGTAAGGTATAGTTCACTTATTACTATAGTCACCAAACATCTTCCTTGTTTTAAGGAAAAAAAATACATACATGATAACTTGCAGTAACAATATGATAATAAAAAAGAATACAATTTAACCAAATAAAAAAAAATATTTGTTTTTCTTGAACAGATTTTGCAGTGTTTCTGAAAACAGGAACTTTGAATACAGCTTGGTCCATTGGAGTAAGATGGTTTGATAGATGGTGAGACAGGACAGAAATGATGGTGCGTGTAAGCCGTGTATGAGATTGGAACTTAGTATAGTTTGTTTTGGAGAAACTTTGTACAGTAGTACACAGTGTCTACGAAAAATGCGAATCATCGTCTCATGGCCCATTGAGACCAATAAAACAGGAACATGAGGGGTCCATGCTTCATGCTTCATACTTCATTGTCATACCATGAATGTCACTGCTTCCTCACTCACCACCATTCACTACTCACACAACACAACACTTTCTTCTTTCCTTTTTCTTTTTCAACTTTCTCCTTCTTTTCTGTTCCTATTTATTAATTTTCTACTCTACTTCCACCCATCCATTCTTTTACCCAAATCTCTCTTCTTTTCTCTCAACCGATGTAAACAGGCACATACCCTGTCTCTGCAAACACGTTCTTAGCCTTCTCCTTCACCAATCTTCTGTCTTTTCAATCTCAATTTCTTTTCTGTACTCTGTATTCAATTCAAGTTTCGTGCTTTCTGCAAGATCTTGTGTTATCTAGCCAACA


Gene Sequence:
>Vu_24876(+)
ATGGGAGTTTGTTTGAGTGCCCAAATTAAAGCTGAAAGCCCGTATAACACTGGTATGTAACTATGTATCTCTCCCTTGATTTTTTTTTCCCTCTTTAATGTGCCCTGTTTTTCCTTCACTTAAGTTTCTGTCCTTGTGCTTAAATGCTTATCACTTTTACTTCAGGGTATTCTCGCTCTCTCTTTTTTCTAGTCCAAGTTTTGTCCTTTCCTTCCCTCTTAATTTAAAAGGAAGAAATTTTTTTTTGGTAAATTGAAGTTATGCTTCGTTTCTTTCCATTTCCTATTGTTTGATTACACTCTTTGGTTCGTTGAGCAAATATTAAATCAACTTCGGTTACTCTGGTTTCTAAAATTCAACTTTTGTTTATCTGAATTAATATTCTGTGCTTTCATCTCATGGTGAGTAGTCTTAAAGCTTAGGCTTAACACTGTGAATCTTTCTCTTCACATATACCAATGTGATCCATGTGTAAACATGATTGAAGATCCAGTTGAGTGAATGTTATATTTGATTTGGCATTGATGAAGTTTAACCAATTGATTGTAATGACTGGTTTGGTTTGGCAGGGTTCAACTCAAAGTATGTGAGTACAGATGGAAATTATCTTGGCAGCACAAACGAAAAGGTATCAGGAAACTCGGTCCCTCTGACTCCTCGGAGCGAGGGTGAGATCTTGCAGTCATCCAATTTGAAGAGCTTTACCTTATCAGAACTTAAGACGGCCACTAGGAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAAGGGTGGATTGATGAGAATTCGTTAACTGCTACAAAACCTGGCACTGGTATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGTAAGCTTTGTCAAATCCTTTCTTCACACTCCATACTAATTAAGAAACAAATGATGCTGACGTTACACCATAGTGCAATTCATGGTTAATGATTTGAGAAGCAAGCAAATCTCAAGTTGCCTTATGTTGTCCATGTTCTGCCAAGTTACATGACGATGTTGCTTCGTTACATTTTAGACCTGTTACCATTTCAATACAATATACAATAGTACTTATGGTTGAAAATAGTGGGAGATTATTTTTGGTGGGTAAGATGTGATTGCCTTACCATGTTTCTGTTTTCTCTTTTAGGCTGAAGTAAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTGGAAGATGAACACCGCCTTCTTGTCTATGAATTTATGCCTCGTGGAAGCTTGGAAAACCATTTGTTCAGGAGTAAGTTTTCCATCTTCTCTCATAGTCTTAACATGAGAAATCTGTTTAACACTGGCAATATCTACTGTAACAGGAGGTTCATATTTTCAGCCACTTTCTTGGAGCCTCCGTTTGAAAGTTGCTCTTGATGCTGCCAGAGGGCTTGCCTTTCTACACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAAACTTCAAATATATTGCTGGATTCGGTATGTGAACTTTTAATTTTTCGTATTCAATATGTAGAAGCTATTTGCATATCAGATCTGGAATAAGTATGTTGTTTGATCACACAGAATTACAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACGGGTGACAAAAGCCATGTCTCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTACTACTGGTTTTATGACACCAAACAAACCATTTCATGACCTTTTCCATTTCTGAATTTAAGCTATTCCAGATTCAGCTCTTTGGTTAATGGCTAAATTGTTGATGTAGGTCATCTTACTGCCAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTAGAAATGATATCTGGAAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACACAATTTAGTGGAATGGGCTAAACCATACCTGGCAAACAAACGTAAAATATTTCGTGTATTGGACACACGGCTTGAAGGACAATATTCAACGGATGATGCCTATAAAGTGGCCAACCTTGCCTTGCGGTGCCTGTCAATAGATTCCAAGTTCAGGCCAAACATGGATGAAGTGGTCACAACATTGGAGCAGCTGCAGGTTCATAATGCAAATGGAGGCAATCAAAATCCTTCTCGTGTTAGAAGAAGAAGTGCTGATGTAAGTAGAGGCTATCAAAATCCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCTGATGACATTAGCCGCATGGAGACTCCCTCAGCTTATCCCAGGCCCTCTGCATCCCCTCTCTATACATGA