Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24854 LG6 12388925 12392200 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 12388997 upstream_gene_variant
G/A 12389016 upstream_gene_variant
T/C,* 12389130 upstream_gene_variant
A/G 12389149 upstream_gene_variant
C/T 12389157 upstream_gene_variant
C/T 12389183 upstream_gene_variant
A/G 12389213 upstream_gene_variant
C/A 12389283 upstream_gene_variant
G/A 12389556 splice_acceptor_variant&intron_variant
C/T 12389577 synonymous_variant p.Thr26Thr
T/C 12389578 missense_variant p.Trp27Arg
C/T 12389586 synonymous_variant p.His29His
C/T 12389652 synonymous_variant p.Pro51Pro
C/T 12389665 synonymous_variant p.Leu56Leu
C/T 12389670 synonymous_variant p.Tyr57Tyr
C/A 12389825 missense_variant p.Pro109Gln
G/T 12389828 missense_variant p.Arg110Leu
G/A 12389835 synonymous_variant p.Ala112Ala
T/C 12389843 missense_variant p.Phe115Ser
G/A 12389933 missense_variant p.Gly145Glu
G/A 12389934 synonymous_variant p.Gly145Gly
G/A 12389940 synonymous_variant p.Ser147Ser
G/A 12389987 stop_gained p.Trp163*
C/T 12390052 intron_variant
C/T 12390062 intron_variant
T/C 12390067 intron_variant
C/T 12390070 intron_variant
T/A 12390153 missense_variant p.Val184Glu
C/T 12390216 missense_variant p.Ser205Leu
C/A 12390247 synonymous_variant p.Thr215Thr
A/T 12390278 missense_variant p.Ile226Leu
G/T 12390306 missense_variant p.Gly235Val
A/G 12390342 missense_variant p.Tyr247Cys
C/T 12390454 synonymous_variant p.Asn284Asn
A/G 12390467 missense_variant p.Lys289Glu
G/T 12390477 missense_variant&splice_region_variant p.Arg292Met
G/A 12390483 splice_region_variant&intron_variant
G/A 12390486 splice_region_variant&intron_variant
G/A 12390500 intron_variant
G/A 12390536 intron_variant
C/A 12390565 intron_variant
C/G 12390710 intron_variant
C/T 12390753 intron_variant
A/G 12390817 intron_variant
C/T 12390965 intron_variant
A/T 12390997 intron_variant
A/T 12391030 intron_variant
A/T 12391048 intron_variant
A/T 12391155 intron_variant
T/C 12391533 intron_variant
T/A 12391552 intron_variant
G/C 12391864 intron_variant
T/C 12391865 intron_variant
C/A 12392002 intron_variant
G/A 12392112 intron_variant
G/A 12392119 intron_variant
G/A 12392121 intron_variant
T/A 12392177 missense_variant p.Trp359Arg
G/A 12392179 stop_gained p.Trp359*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24854.1
MECRRKRDNPKSNSTFPYEIPPEYGTWQHRYLAVSSNELTGNIPPELGNLPTLHELYCGNLTLPLPNPLLTSNLPHLLLLFHYNHIIFIGVVLLQRAAKQHQQQLSPSPRRASLFLGRRLSSRLKVSAVVVDSAAKKKMATIVAGISKVSDALVGSKSARKNWDEQPRPRRLKLNTKKRVPLPVPPLQEKLWNLEPLHPFWFLSSASIPTPHRTTKPLIKLQFFTIQKKGVCVLGLHAMLTTQTLLYTREHDFNQQSKLKPKPNLILTILEHKEKPETSVSSNNEIGVKCGRDKLQKLFAPFGQLASVNLVLDPRTKRPKGYGFVSYNTEMEAEKALKAMNGRLHSLLLCMENYVVTSGWKCPGHV*


CDS Sequence:
>Vu_24854.1
ATGGAGTGTAGGAGAAAGAGGGATAATCCAAAATCAAACTCCACTTTTCCTTATGAGATTCCTCCCGAATATGGCACCTGGCAGCACCGGTACCTCGCCGTCTCCAGCAACGAGCTCACGGGAAACATCCCTCCGGAGCTTGGAAACCTCCCCACGCTTCACGAGCTATACTGTGGAAACCTCACTCTTCCTCTTCCAAATCCCCTTCTGACTTCAAACCTTCCTCACCTTCTTCTTCTTTTCCATTATAATCATATTATTTTTATTGGTGTTGTTTTGTTGCAGAGAGCAGCAAAACAACACCAACAACAGTTGTCACCTAGTCCGCGGCGGGCGTCACTTTTTCTTGGGAGGAGGTTGTCCAGCAGGCTCAAGGTATCGGCGGTGGTGGTGGACTCCGCCGCAAAGAAAAAGATGGCCACCATTGTCGCCGGGATCTCGAAGGTCTCCGATGCGCTGGTTGGGTCCAAGAGTGCGAGAAAGAATTGGGATGAGCAACCCCGGCCACGCCGATTGAAACTTAACACAAAGAAAAGGGTGCCGCTTCCTGTGCCCCCACTGCAAGAAAAACTCTGGAACCTTGAGCCCTTGCACCCTTTCTGGTTCCTCTCTTCGGCCTCCATACCTACACCACACAGAACAACCAAACCGCTCATCAAGCTTCAGTTTTTCACCATACAGAAAAAGGGGGTTTGTGTTCTCGGACTCCATGCAATGTTGACCACTCAAACCCTTCTCTACACGAGAGAACATGATTTTAATCAGCAATCAAAATTGAAACCAAAACCAAACCTGATTTTGACAATCTTGGAGCACAAAGAGAAACCAGAAACGTCAGTCAGTTCCAACAACGAGATTGGAGTTAAGTGTGGGAGGGATAAGCTGCAGAAGTTGTTCGCTCCGTTCGGACAACTTGCTAGTGTTAATCTCGTGTTGGATCCTAGAACTAAAAGACCCAAAGGGTATGGGTTTGTCTCCTACAACACTGAAATGGAAGCGGAAAAGGCTCTGAAAGCCATGAATGGCAGGTTACACAGTCTACTACTATGCATGGAAAACTATGTTGTGACTTCTGGTTGGAAATGTCCTGGGCATGTCTAA


Promoter Sequence:
>Vu_24854::LG6:12386925-12388925(+)
TTATAAAATTGAAAGATTAAAATAATAAAATAACTTATATTAATAAAGATGAGGATAAAAAAATGTGTTTATGAAAAAGTGATATGAAGCCGTTAAAAAATAATTAATATAGATATAGATAATTTTTTTTTTTAATTTTTATATTAAATTTTTAGTATTCCCATTTGTCACAGCTTAATGTTGCATAATACCTCTCACCGCGCTTCTTTTGGTGGTCTTTGGATAACTCCAAAGATCCTAATTGTTTGCTGCGATTTGAGCTTTTGCAGTTTGAACTCAAACTAATTAGCAGAAAAACTATAGTACTAATAGTTTCTATTTTGAAAACTTAAATCAAAAACCAAAAACACAAATCAGAAATCCAAATACAAGATTCAAAAACCCTTCTCGAAGACCCAAAGTGCAATCCGTATCTCCATTTTTTCTTCGTCTACTAGCTCTCCGGGCGGTCCTCGGTCGCGTTCTCGCGGTGCCTAGTAAAGTCAATTTTGGTACATCTCACGAGTTGAATTTTATATGAAGTATACTTTTACGAGTCGAGTTTACCGAGTGTTCTGAGTGTCTCGATTAGGGATTAGAGTTTTGGGAGTTGCTTAATTTTATTCTATTTTCATACAGTGGTATTCTTGTTAATCTTCTTCGTAGACTTTGCTGTGTAGAGTTCGTGACTAAGAATTCAACTAATTTACGTCATGGAGGTTAGTATTGAATTTGTTTTATTGCTGTCATCTTGCTAAACTGTTTCGAATTTTAGTTTGATCGGTTTTTGTTGTTGTTGCTGGTTTTGAATAGGAAAATGGAGCTTTCTCTGAAGTGGTTGACATAAACTAGACTACCATGACACTGGAACCAGAAAAGCCTACCAGTGGTGGACTCTATGTTCCTGGGAAGGATAGGGTGCTTTACGTGCTACAAAAGAGAAAATCATGTTTTGGTATTTTGTTTGTTTTGATATGCATTTTGTATCATAAGTATTTTTCTTTTAATCATTCACGAAATTCTTATTTTCACGTAGAATTTCAATTTAGTTTCGTTGTTTCTGGAAATCTCAATTGGATCCTAAATTTATGAAAATTGTAACAATTAGATCATTTCCGTTAAATTGTCTCCAACGACGTTAGTGTGTGTTTGACGTGGCACGCTGTAGTCAATTTCTTAACTGACGTGGCTGATTGAAGCAGGGGCAGCTGAAGCACGTGGATAATAAAATTTTTTAAGTAAACAGAAAATGAAAGTTTTAAACCAAAATTGGGATTCAAATTTTTATTTGATCGAATTAGGGATTGAGATTCTTCTGAGTACTTATAGGGTTCATCCACAATTCATTCCATTTCACAAATTGGGGTATCATTTTGGGGATTTAGGGTTTAATCCAAGTTGACCTTGACAAAGTGTGTGCAGTTGTCGTCGTCATCGGATAAAAGTGATTTGAGAAGTTTCTGTTTAGGGAAAAAGATCCCAATTTTCAATGACCTAACCTTTTCTTTCTCCTTCCTCCTCTCACATACACCCATATAAATATATACCTTCTAGATCTCCTTCCACCTCTTAACGGATCGCAGATTCCATTAAGCTCATCTGGGTCTCCAAATTTTTGTTTCAGTTCCGAATGCTCTTAAATTCTGTTGTTTTCTTGTGTTCAAAGAGAAAACATGGCTGAAAGCAGGTACCTTTGCAGTCAACAGTGAAGGGTACATAGCAGCAGCTTCTTTTTCAACTTTGGAGAGTTCACTCAGCAAATTTCTTTCTTTTCTTTCACTGCTTTACACTTTCTTTTCGGGAATTATTTATTGTCATTGACAATTTGCTGCTCTCTGCAAACCCTTTTCCTTGTACCTGTTTCTTTTTCTACTCCTTAAGTTCACTTTGTTTGAGTCTTCCTTTTTCATTGGTTGCTTTACCATAATTTGACAAGGTGGCTGCTTAAAAATCTCATTGTTGATCCACACGGTGTCGGAAAATTTGGCTCTTTTTTTGTCTCTTTATTCTTGAGTTGAAGA


Gene Sequence:
>Vu_24854(+)
ATGGAGTGTAGGAGAAAGAGGGATAATCCAAAATCAAACTCCACTTTTCCTTATGAGGTATAGGAAAGAATTCTAGGGATGTTAAAATCTCGAAAGGACAAAAGCTCGGTTTCTTTGGTTTGCAAAGAGTGGTATAACGCCGAGAGTGGTATAACGCAAAAAGGTTTAATCATTCACGTGCTTGACCTGCCTCTGCTTCAGTCAGTCACGTCAGTTAAGAAACTAACTACAGCGTGTCATGTCAAACACACACTAACGCCGTTGGAGACAATTTAACGAAAAGGATCCAATTGTTGCAATTTTCATAAATTTGAGACCCAATTGAGATTTCCAGAAACAAAGGGACTAAATTGAGATTCCACGCGATAGGGACTTCGTGAATGATTAAACCTATTTTTTTTTTGGTTCTGTTCACTATCGGATTCTTATGTCATGTTTTATAATTTTTGGGTGATTTGATTCAATAATAGCATTTTCGTTAAATGCAATTAACGACGTTAACTTTTTTAAGCTGAGGCATCCAGGTGGCATCGTATAGGTGGATTTTTAACATTTTTAATTGTTAAATATATTAATTGTTAAATATTAATTGTTTAACATAATTTAATATGCTTAATAATTTCTTTACCCAGATTCCTCCCGAATATGGCACCTGGCAGCACCGGTACCTCGCCGTCTCCAGCAACGAGCTCACGGGAAACATCCCTCCGGAGCTTGGAAACCTCCCCACGCTTCACGAGCTATACTGTGGAAACCTCACTCTTCCTCTTCCAAATCCCCTTCTGACTTCAAACCTTCCTCACCTTCTTCTTCTTTTCCATTATAATCATATTATTTTTATTGGTGTTGTTTTGTTGCAGAGAGCAGCAAAACAACACCAACAACAGTTGTCACCTAGTCCGCGGCGGGCGTCACTTTTTCTTGGGAGGAGGTTGTCCAGCAGGCTCAAGGTATCGGCGGTGGTGGTGGACTCCGCCGCAAAGAAAAAGATGGCCACCATTGTCGCCGGGATCTCGAAGGTCTCCGATGCGCTGGTTGGGTCCAAGAGTGCGAGAAAGAATTGGGATGAGCAACCCCGGCCACGCCGATTGAAACTTAACACAAAGAAAAGGGTGGTTCTAATTTTGCAGAGAAATCCAATTTTGCAGCTATGGGTATCACCATTCATGAAAAGGATGGTTCTAATTTTGCAGAGAAATCCACCCTCACACATCTCAGCCGCTTCCTGTGCCCCCACTGCAAGAAAAACTCTGGAACCTTGAGCCCTTGCACCCTTTCTGGTTCCTCTCTTCGGCCTCCATACCTACACCACACAGAACAACCAAACCGCTCATCAAGCTTCAGTTTTTCACCATACAGAAAAAGGGGGTTTGTGTTCTCGGACTCCATGCAATGTTGACCACTCAAACCCTTCTCTACACGAGAGAACATGATTTTAATCAGCAATCAAAATTGAAACCAAAACCAAACCTGATTTTGACAATCTTGGAGCACAAAGAGAAACCAGAAACGTCAGTCAGTTCCAACAACGAGATTGGAGTTAAGTGTGGGAGGGTGAGAAGAAAGTTTCCCAAAGAGAGGAGAAGGTGAGAAAGAGGAAGGAGAAGTGGAGAAGGTGGTTTCCACACAACGAGATATTTCTAATTATATATTATTAGTTGTTTAACATAATTTAATATGTTTAATAATTTCTAATTATATTTTCATTTATTAATATATTTAACAATTACAAATGTTAAAAATCCACTGGATGTCTCAGCTTAAAAAAAAAGTTAACGTTGTTAACTACATTTAACGGAAATGCTATTATTAAATCAAATTAACCAAACTAGGGACTCAATTGATCACTTTCAAAATTGGAAGACCCAATTGAAACAAACTCGCAAATATAGAGACCTCCGAACCTATTAAACCAAAATTATTTTATAATTAATGTAAAAATATGAGCTACATTTTTTTCTTATTGAAAACATAGAGTCTGCATAAGAAGCGCAATCTCAAAGTTATCAGAAAATATGATAATTGATTTCGTTATATAATCAATAAAAATGACTCGTTATTTTACATTAATCAAAATAGCATTTTTATGTTAACTAACTATCACAATATTATTTTTGTTAAATACAAAATTTCACTTCACATCATAAATAATATGATAACATTCATCCACTTACTCGTAATCAGATAATAAAAAAAAGATATTAAATAATAAAGATTTAATTAAAAATATATTTTTTTAATTATTAATTAACATACGAACTTAATTGAGAGACCCAATTCATGATTTGAAATCCAATTTTTTTTTTTAAATCAATGAAGAAGTAAATATAAAATGGAGATGAGTAGAACAATAAAGGATAAATGTTGTAGAGAATGGGGAGAAAACTCATAGTCACCAGTTAGGGTTCTTCTTTCTTTCCTCTCTTTGATCAACTCAAGGCCCTAATCCTCACCATTGCTTCGTTTTGTTTTTCAGGATTATCTTTTTACATTACACAGGATAAGCTGCAGAAGTTGTTCGCTCCGTTCGGACAACTTGCTAGTGGTGTGTTTTGCTTTGTTTGTGTTTGTGTTCGGCTTTTTCTCTGTTTCAATTTTGCTCCCTTTCTCATTTTTCTCACCCCTTGTTCATTTCTGTTATTCAGTTAATCTCGTGTTGGATCCTAGAACTAAAAGACCCAAAGGGTATGGGTTTGTCTCCTACAACACTGAAATGGAAGCGGAAAAGGCTCTGAAAGCCATGAATGGCAGGGTAATTTTATCTCATCTGTATCCACTGTTGTTTCCTTTTACCAATATCATACTAGGCACCCTATCTGTATACTTGGATTGACTATATTTCTGGTGCAAGTGACTACGCATTGAAGGTGTTTGTTTAAATACCTGAATGATTGCTGATTGGAAATATTAAAGTATTTCGATGAACAAGTTGTCTAGCTGTCTCAGTGTCCTTGTTGGCTTTTGTTGGTCAACATAAACATTACTGTACTCCACATAAAGTTGTATTGAGTGCCTTTTGATACATCCACCAAGTTTTGGAATGCACCTAAAAAGTTATCCTCTCGTGATGTTGATTTCGGTTTTTTATTTGTTCTTTTCAACAGTTACGTACTAATATTGCTCTCTCTAAGCATTAATGAGATTAAATTACTGAGAGTTGTATTTATCATGTTTATAATTCTAACTTGTATATTGTGTTTATAGTTACACAGTCTACTACTATGCATGGAAAACTATGTTGTGACTTCTGGTTGGAAATGTCCTGGGCATGTCTAA