Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24804 LG6 11902229 11902907 LOB domain-containing protein 1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 11902436 synonymous_variant p.Gln130Gln
A/G 11902490 synonymous_variant p.Ile112Ile
A/G 11902565 synonymous_variant p.Ala87Ala
G/T 11902602 intron_variant
G/T 11902655 intron_variant
A/G 11902662 intron_variant
T/G 11902740 synonymous_variant p.Pro56Pro
T/C 11902767 synonymous_variant p.Lys47Lys
T/A 11902768 missense_variant p.Lys47Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24804.1
MESDANTLSSSPTFSHSSNTLSSASPPQVVMTPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPEGQRADAVASMVYEAGARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMSQTPQESPQQSLDDFIASPSHSSGYQNNLSFFEDNTNLNSLWEPLWT*


CDS Sequence:
>Vu_24804.1
ATGGAGAGTGACGCGAACACCCTCTCTTCCTCTCCCACATTCTCTCATTCCTCTAATACCCTTTCTTCTGCTTCCCCTCCCCAAGTTGTCATGACCCCTTGTGCTGCATGCAAAATCCTTAGACGAAGATGTGCTGAGAAATGTGTGTTGGCACCGTATTTCCCTCCAACCGAACCCGCCAAGTTCACCATTGCTCACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGGGTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTACGAGGCTGGTGCAAGAATAAGAGACCCTGTATACGGATCTGCAGGTGCAATTTGCCAGCTCCAAAAGCAAGTGAACGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCACCCCAACAATCCCTGGACGATTTCATCGCGAGTCCTTCCCACAGCAGTGGCTATCAGAACAATCTCAGTTTCTTTGAGGATAACACCAACCTAAACTCTTTGTGGGAGCCTCTCTGGACATGA


Promoter Sequence:
>Vu_24804::LG6:11902907-11904907(-)
CCAATGGGAAACAAAATTCTTAAAAATTACAAAAGTCCAACTATTTCCACTGCAAACTTCAAACCTCGACTTTATTTTTTCCCTCAACGCGTGGAAAACTTCATCCCTTCGAGATAACTACTATTAGAACTAATTTCCAGTATTGGATAATGTCTGCTAATGTTTAGATTACCATAATTAAATTACCTTTTCCATCTAAAATCTGATTAGAGATATCTGCAAGATGATTACTTGATTATTAATCTATCATTAACCTAAAAAATTCAATTAAGCTTACTATCAAATCACAACAGATTTATGTTATAGGTCGTCTTCCTTACTTTCATATTGATATAGAACTTAATCTGAAACTGTCCGTAATGTGTAATGTGAGCATAATGCATTAAAGTTAGAAACTTTTCTGGAAGAAATGTTTAAGAAAGAAGAGAAAGGTTATCTACACGCATAATCTTATCATCACAGACACATTGTATGTAAAAGGAATTAATTAATGATGGATATTGCAGAAAAGTCCACTGCAAAACCCAGGACAAATTAGGCATAAACGAAGCAAAATTCAATGATTTGAAAAGTTAGAACTTAATGGAAAAAAGCTTTGATTGATTATAACTAGTTTATCTTTTCCCTTGTGTTCAACGAGCTGAACGGCCCTCCACCAACCTTGCCCCACCCATTACATCTCGTGCAAACATGCAGACACAGACATATATACATAAATTTCTGCAAACAAAACAAATACTTCGGTTTTGGTTTTGGTTTGGTTTCTTACACAGACTTTCGTGAATAAATTATAAAACGCCATCGTCATTAGGTGTTAGTTAAGAAAGTAGATAGCACGGTCTCACCGTGGTGGCAGCAACCCCAATAACTCTGTCCAAACGCACCGTTTCTGTCCAAATCACTGCCACTTGTCACCACCACCACAACCCAACAAGCACTTCCGCGTATACCAAGAAAAACACCCGCGTATTACTTACGTCATTATTACGTACGACTCTGTAGTTAAAGTGAATTTTGGTATGCAAAACTATAAAGAATTTGCTAACAATGGTGTGGGCCACGTGCATGTTGTCCCGAATTGGAATTCTAGAACTCAAAAGGTGGACCCGTAAGTGCTGACCCGCACACACACACACACACTCCAGAGAATGTGATTGTGTTATACACCGTTCTATTGAACGCGTCAATTGGGTTAACTGGGTAAAGTGTTGATTTTATACAGCATTTGGTTCAGAGATTTACACGAGTAGTGCAGACCAGATGTTTGTCAAAATGGGGGAATGTGTTTTGTGTTTATTTTTGTTTTCAGACTGCTAGGCATGCATTTTGTTGAAATAATGTATGGTTTAAATGAAATAATAACTAATGAAAAGGAGACGTGTGGCACGTATTAATGAGCAATTACTGCGTGGTTTAAGCAGTTTAATTGGAGTATGACTTTTTGCGTCGGAAAGAAGTACCACGACTACTGACTAGGGTCCAAAAAAGATGGAGGGTGAAGAGGACATGTCTATCACCCTTTCTTTTCTCTTTTACTCACCAGGAAAAGTCACTTTACTAGACCTAAGCAAGTTAGGCATAATATAATGTTTTTTTCTATGGAAAATGTATGCTAGAATTGCTTCCATGTGGAAGGTTCTAACTTAACTTGCATTGCAGTGATTATTATTATTATTATCATTACTCGATGGTGTTAAAGTGAAAGGAAATGAAAAAAAAAAGGAAGGAACAAGCAGAATATAGAAAACTGTTTTGTCAAACTTGTAAAGAGTTTTCATACAATAAGCCAAAGGAGGCATCATAATCACAACACCTAACAGAGAGTGAGAAAAGAAAACAGAACGCAGCCAGGTTTAACGAATTTCATACGCTCTTTCTATCTCATTGTTTCTTTATAAAACCCTAGTTTGGCTCCCAAACAACCCCACGCTTCTTCACTCTCTGTCCCTCAAACACACGAAATAGAAGCCAAACACAACACAACAAATTCAGGGTCAGCA


Gene Sequence:
>Vu_24804(-)
ATGGAGAGTGACGCGAACACCCTCTCTTCCTCTCCCACATTCTCTCATTCCTCTAATACCCTTTCTTCTGCTTCCCCTCCCCAAGTTGTCATGACCCCTTGTGCTGCATGCAAAATCCTTAGACGAAGATGTGCTGAGAAATGTGTGTTGGCACCGTATTTCCCTCCAACCGAACCCGCCAAGTTCACCATTGCTCACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGTTTTTATTACACACCTTAATGCATTGTATCGAGCATTGAAGAACTGAATTGATGACATTATTGTTTTCGTTCGCTTTCCAGGAACTTCCAGAGGGTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTACGAGGCTGGTGCAAGAATAAGAGACCCTGTATACGGATCTGCAGGTGCAATTTGCCAGCTCCAAAAGCAAGTGAACGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCACCCCAACAATCCCTGGACGATTTCATCGCGAGTCCTTCCCACAGCAGTGGCTATCAGAACAATCTCAGTTTCTTTGAGGATAACACCAACCTAAACTCTTTGTGGGAGCCTCTCTGGACATGA