Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24705 LG6 10715189 10717718 PREDICTED: histone deacetylase HDT1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 10715260 downstream_gene_variant
A/G 10715268 downstream_gene_variant
T/G 10715271 downstream_gene_variant
A/G 10715283 splice_region_variant&intron_variant
A/G 10715471 missense_variant p.Thr44Ala
G/A 10715527 synonymous_variant p.Gly62Gly
T/G 10715678 downstream_gene_variant
A/C 10715896 downstream_gene_variant
T/C 10715997 synonymous_variant p.Ile107Ile
G/T 10715998 missense_variant p.Ala108Ser
C/A 10716019 splice_region_variant&intron_variant
C/T 10716157 synonymous_variant p.Cys132Cys
A/G 10716162 missense_variant p.Asp134Gly
G/A 10716168 missense_variant p.Cys136Tyr
T/A,* 10716310 downstream_gene_variant
T/A,* 10716311 downstream_gene_variant
T/A 10716332 downstream_gene_variant
A/T 10716355 downstream_gene_variant
G/T 10716419 downstream_gene_variant
G/A 10716425 downstream_gene_variant
G/T 10716458 downstream_gene_variant
A/G 10716476 downstream_gene_variant
A/G 10716527 downstream_gene_variant
C/T 10716577 downstream_gene_variant
G/T 10716619 downstream_gene_variant
T/C,* 10716641 downstream_gene_variant
A/G,* 10716705 downstream_gene_variant
A/C 10716742 downstream_gene_variant
C/T 10716745 downstream_gene_variant
T/A 10716752 downstream_gene_variant
A/C 10716771 downstream_gene_variant
G/A 10716847 downstream_gene_variant
T/G 10716854 downstream_gene_variant
T/C 10716864 downstream_gene_variant
G/T 10716876 downstream_gene_variant
A/C 10716881 downstream_gene_variant
C/A 10717119 downstream_gene_variant
A/T 10717130 downstream_gene_variant
A/T 10717202 downstream_gene_variant
C/T 10717239 synonymous_variant p.Asn205Asn
C/T 10717269 synonymous_variant p.Ser215Ser
C/T 10717286 missense_variant p.Ala221Val
C/T 10717366 downstream_gene_variant
C/T 10717369 downstream_gene_variant
A/T 10717513 missense_variant p.Gln248Leu
A/G 10717591 downstream_gene_variant
C/A 10717593 downstream_gene_variant
C/G 10717599 downstream_gene_variant
G/A 10717703 missense_variant p.Ser282Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24705.1
MMADTAISISAEVKVGESVKVDPTEFEACIHLSQAALGEAKKDKTNEPVVVYLKVGEQKFVLGTLSREKIPQISLELVLEKDFFLDFCCVLAGTSEDDEFTDSDEDIPLLNAENGKPEKKVEELKALASKKPDAKTGAVAKKVKVVEPEKDNEDSDDDSDEDDALGISDEEMEDADSDDSDEEDDSDEDDDEETPPKKADLGKKRPNESASKTPVSSKKAKNATPEKKDGKKNIKAETPQSVKKGGKTPSSEAKDKSPKSGGLICKSCSKTFNTESGLQQHSKAKHGGQ*


CDS Sequence:
>Vu_24705.1
ATGATGGCTGATACTGCTATAAGCATTAGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTTGACCCAACTGAATTTGAGGCATGCATCCACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAAACAAATGAGCCTGTTGTTGTGTACTTGAAGGTCGGTGAGCAGAAGTTTGTCCTGGGGACCCTGTCCAGGGAGAAAATCCCTCAAATATCCCTAGAATTGGTTCTGGAGAAGGATTTTTTCCTTGACTTTTGTTGTGTTTTGGCTGGCACTAGCGAAGACGATGAGTTTACTGATAGTGATGAGGATATTCCATTGCTTAACGCAGAGAATGGAAAACCTGAAAAGAAAGTTGAAGAATTGAAGGCACTTGCATCTAAAAAGCCTGATGCTAAGACTGGTGCTGTAGCAAAAAAAGTCAAGGTTGTTGAGCCAGAGAAAGACAATGAGGATTCTGATGATGATTCTGATGAAGATGATGCTTTGGGAATTTCTGATGAAGAGATGGAGGATGCTGACAGTGATGACAGCGATGAGGAGGATGACAGTGATGAAGATGACGATGAAGAGACCCCTCCTAAAAAAGCCGATTTGGGAAAGAAGAGACCAAACGAATCTGCATCAAAAACTCCTGTCTCCTCCAAGAAAGCTAAAAATGCTACTCCTGAAAAGAAGGATGGCAAGAAAAACATAAAAGCAGAAACTCCTCAATCCGTGAAGAAAGGTGGAAAGACTCCCAGCAGTGAAGCCAAGGACAAGAGTCCCAAGTCCGGTGGACTTATTTGCAAGAGTTGCAGCAAGACTTTCAATACCGAAAGTGGTCTGCAACAACATAGCAAGGCCAAGCACGGCGGTCAGTGA


Promoter Sequence:
>Vu_24705::LG6:10713189-10715189(+)
GATATACAACAAGTCTCCCTGAAAAAGCCTTACTTTTAAATCAATCCAAATTTCTTTTGTATCTTCCATCCAAAGGATGCTTTGCCTAATGTTGGGTGACAAAGAAGGGACAAACCTCAACACAACCATATAATTACATTGTTGCCATGCATTTTTCAAAGAACTTCCCTTTTATGATTTATTGGTTGAACCATTTACAAATTGAGACTTGTTCTTCGCACTCAACGTTGTGAGCATTGACTTAGTCAAATAATGGTTGTTAGTAAAATAAAAAATAAGAGAAATGAGTGTCATAATTGGACATTCGTTGGATGAAGATAAATGTGACTTTCACTGGTTAACATTGTAGTTTCTTCTTCCTCAACCATACGAAAAACACGAAGAGAAAAAAAAAAGGTAAAACGCGAAATATGCAGAAAGAAAGAACAACAATCAGATTAAAAACGCAACAAAGCTCTTCAATTGAATAACATTGATACCATCTTAAACTCCATTCATTGTCGTGTGTCTTGGGATGAAAAACATCTAAATACAAGTGTAGAAAACATATGGAAGACAAATTAAAAAGAAGATTTGAGAAAAGCAAGAAAAGAAAGAGTGTAAAACTAAAACTGATGTCATTATGTTAGGAGTTGGAAAGTGTATGAAAGGAGGAAGAAGAATACCGAATGGTAAGGGAATGATGGTCCAAACGGTAGGGGAATAAGAGTAAGGGAGTGGGGGTCCGAACGGTAGATGAAGAGGAATGAAGGAGCCGAACAATATATACACTAATATCGAACGGTAACTGCTAAGGAGGAGGGTGTGCATGGCCGAACGGTATAAGGTTTGCTAATACCGAACGATGGATGATGAATAAAAAGAGCGAAAAAGTTTGTTAGGCTGTTAGGGGGAGAGAGAGAGTATAAATATACCTTTGTTATCTCAGATAAAGGAGAGCGATATTTTCTTACGTTTTGTAAACAGGTCTTGGACCTTGTTGAGGGGGATTAGGCTCCCCAGTTGTATTGTTTTCGTTTTACAGTTACAGTGAATATATACAATTACAGATATTATACATATTTCCTTTGTTTTCTCTTGTTTATTTGCTTTGGTGTGAGTGAGTGTTGCGAGAAAAGTTAGGTCTCCTTCTCATAAACGTAACATATTATTTGCTTATTGTGTACAAATCAATGAGATACAAGATTATATGGAGAAAAGAAATGAAAAACTACATAACAAATACATGTAATCATGCAAATATCTTAAATTAAATGGGTATCTTGACTAAAGGATGTATTGTTAGGTACAAATAGATGTTGAGATTTTGTTATATTTTAATATTGAAATGGGAAAAAACCGAGAACGAAAATGTAAAAGAAAGGTAAACTAATGATTAAAACAAAACTATGAAAAAACTAAGTGAAAAAGAAGAGAAAGAAAATATGAAAAGGAGGAACAAGGTACTGAAACGCATGCAAGAAAGACCATGTGAGGGAGAAGAGAGAGAAAATTAGGATTAAATTTAAAAGTCCAAAAGGGTAATTATGGCATTGTAAACATTCTAGTGCTGTTGGTTGAAATATGCGGAGGTGCAAGAAGTAATTTTCAAAAATCAAAGGTTTGGGGTAAGAAAAAAGAAAAACCCTAGTTGCCACGAAATCAAACAACTCTTTTTAGGGCTATAAATATTCATAAAACCCTTAAAACCCTCTCTGTCTTCCCCGCCACTCTTCCATTTTTTTAGTCTTCTACCCTACTTTCCCTCTGCTTCATTCCATTTTTCTTCCAATGGAGTTTTGGGGTAATAATCCTATTCTTGGCCTTTCTCTCTTATTCCTTTATCTTCTTCTTATTTATATTTTCTTCTTCCGATTTGTTCTTTCTCTGATCGAAGTAATTTCCTCTGTCAACTATTGCTAAGCGTCCATATTTTCAGTTATACGGAAATGGGTTCTTTTAAGTATTTGCAGTACTGATTTATTGCATCACTTTTATTTCCTTCTTCCTTGTGTCATCAA


Gene Sequence:
>Vu_24705(+)
ATGATGGCTGATACTGCTATAAGCATTAGTATATATTATGATGGTTTATGTATTAGGGTTTTATGTAGGGATATCTGATATTTTGGTTTTGTCTATCTAGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTTGACCCAACTGAATTTGAGGCATGCATCCACCTTTCTCAGGTTAGGGTTTTGGGTTTTTGCCATGTCTTGTTGTACGTTTTTGTGTGTAGACAAAGTTACTGACCTGTTGCTGTGTAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAAACAAATGAGCCTGTTGTTGTGTACTTGAAGGTCGGTGAGCAGAAGTTTGTCCTGGGGACCCTGTCCAGGGAGAAAATCCCTCAAATATCCCTAGAATTGGTTCTGGAGAAGGAGTTTGAACTATCCCACAGTTCAAAGAGTGCCAGCGTACATTTCTGTGGATACAAGGCATATTACTCTGGCGATGAATATCCTTGGCATTATTGATCTATTTTTAAATTTTTAAACTGCTGTTTATAAACTAATATCTTAATGTTTGAGGTTTATGTGGAGCAACTGCTTTATCCAAATGAATGACCGGGAACACATTTGTTTCGCTATCTCGTTTTAGCTTTATATTTGTTATTCCCTTTTAAGTTTTTTCCTTGACTTTTGTTGTGTTTTGGCTGGCACTAGCGAAGACGATGAGTTTACTGGTAAGGCTCAAACATTCACTTATAAAAATAGTAATTACATTTGGATTGAGTTGCTTGGTCTGACATTTGTTTTTGTTTTAATTGGACAGATAGTGATGAGGATATTCCATTGCTTAACGCAGAGAATGGTACCTGTTTCTTCTTAATCTTAGTTTTATTGTTGCTTGTGCATGAGTCTACACGGTTAGCTAATTGACATGTATCTTATGCTAGGAAAACCTGAAAAGAAAGTTGAAGAATTGAAGGCACTTGCATCTAAAAAGCCTGATGCTAAGACTGGTGCTGTAGCAAAAAAAGTCAAGGTTGTTGAGCCAGAGAAAGACAATGAGGATTCTGATGATGATTCTGATGAAGATGATGCTTTGGGAATTTCTGATGAAGAGGTATTAATTTGCTTTGTTTTGAATTGCTCTTGATGTGAAATTTTTTGACTGTGTTTATAATATATGACAATATGCTTAAATGGTTAGAGTGCGATACCTTTGTTGAAATTGTTTGCAGTTTTATCAAGGGTTTCATATAGTGCTGGCATGGTGGTGTGGAGCTGCCCCTAACATCTAAAGGGGCAGTTGTAGCTATGTGCTATTTTATAGATGTAATAACAGTTAATGATAAAGAAGACTTGGATTTAGACGAAATGACTAATAGTTATTATCTTGGAAACTTGTATTTGACATTTGTTGGTGTTTACTTGTATAATGACAGATGTTGCTAATTGAGTGATTTTAATTAGTTTTTAGAATTTATTTGTAGATGGTATGCTGTATATAAACAACAAAAAGTTTAAAATAGTGGTTATTGTGGAGTTTGGAATCTCTATTGATTGTTTGGTACTATCGCTCTACTTGACGTCCAATTCACATTGTTTTGCTAGTTTAAAATATATTCAAAGTTTTTTATATTGATTTTATATTTCAAAATCAATGTATTTTGAAGATACAGTAGAGGTGCAATTTTTAAGTAGGCATTCTTGCTAGTTGTTTTAAAGAGTTTTAAGTTGCAATTAGAATCTTGTCAGTGAAAGTAACTAATTGCTCTTGATAACATTCTTGTTGTAACAATTAACCATTCAAGTATTCATCTTTAAAAGTTGGGTGTCTTATTTTATGGTGACATTTTACTGTTTATCTGTTTAGATGGAGGATGCTGACAGTGATGACAGCGATGAGGAGGATGACAGTGATGAAGATGACGATGAAGAGACCCCTCCTAAAAAAGTATTGGATTTTCACCTGTCATTATTAGTTTTATTTCTATGATAGTGATGACTTAACAATTATTTTGTAGTTCTATGTTGAATTCTATTTTATAATTCATGTTTTGTAGGCCGATTTGGGAAAGAAGAGACCAAACGAATCTGCATCAAAAACTCCTGTCTCCTCCAAGAAAGCTAAAAATGCTACTCCTGAAAAGAAGGGTGAGTCATATATAATCATGTATTTTTGTCAGTGAATGTTTTACATCATTGTAGTGAATGTACGCCCTGACTGAACTTGGAAGCTGAGGTATTCACTTGTCTTTAGTTCTGCACTACTAACCACCTCTTTAATTTGTGATTTAGATGGCAAGAAAAACATAAAAGCAGAAACTCCTCAATCCGTGAAGAAAGGTGGAAAGACTCCCAGCAGTGAAGCCAAGGACAAGAGTCCCAAGTCCGGTGGACTTATTTGCAAGAGTTGCAGCAAGTATGATATTTTACAAAAGACCACAACCTTAGCTTTGTTAAATTGCATGATGACCTGATGTTAATATTGTGTGTTCCTTTGTCCAGGACTTTCAATACCGAAAGTGGTCTGCAACAACATAGCAAGGCCAAGCACGGCGGTCAGTGA