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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24669 LG6 10310341 10312568 PREDICTED: myb-related protein 2-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 10310434 3_prime_UTR_variant
A/T 10310435 3_prime_UTR_variant
G/T 10310515 3_prime_UTR_variant
G/A 10310594 3_prime_UTR_variant
T/A 10310603 3_prime_UTR_variant
G/A 10310951 synonymous_variant p.Ser333Ser
T/A 10311092 synonymous_variant p.Thr286Thr
C/A 10311141 missense_variant p.Gly270Val
G/A 10311148 stop_gained p.Gln268*
T/A 10311211 missense_variant p.Asn247Tyr
T/C 10311220 missense_variant p.Asn244Asp
T/C 10311487 intron_variant
G/A,* 10311586 intron_variant
T/C 10311769 intron_variant
A/G 10311848 missense_variant p.Ser126Pro
T/C 10312357 synonymous_variant p.Gly38Gly
C/A 10312365 missense_variant p.Asp36Tyr
A/T 10312392 missense_variant p.Phe27Ile
G/A 10312396 synonymous_variant p.His25His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24669.1
MYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNTVTHKMTTSAATGERLSETSGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLETAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTHTNQPNDCSVDSCLTSCDRSQKEQEIQNGFRHFNSHMFMEQKEATEAPNNLRNCELKWCDDGKKNTFLAPLSRNEERRNYAAETGPGNLSMSIGLERETENRSSMYPERLITENQSEGEFQHRNRIKTETMKPVDEKVSQDYRMPASYFVAARLDLNNHGDNEAATTCKQLDLNRFSWS*


CDS Sequence:
>Vu_24669.1
ATGTACCATCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGTTCTGGAGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACAGCAGATCTTCATGCCAGATTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATTTGAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACACCGTGACACACAAAATGACAACAAGTGCAGCAACTGGGGAGAGACTTTCTGAAACCAGTGGAACTCACATGAACAAATTAAGCCTTGGACCGCAGGCTAACAAAGATTTGCATATAAGCGAGGCGCTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATTGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAGACTCTTGGCAGACAAAATTTGGGAATAGTTGGACTTGAAACTGCCAAAGTTCAACTGTCAGAGCTGGTGTCAAAAGTCTCATCTCAGTGCCTTAACTCAGCATTCTCAGAGCTGAAGGAATTGCAAGGATTTTGCCCTCAGCAAACACACACCAACCAGCCAAACGATTGCTCAGTGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAGCAAGAGATTCAAAATGGCTTTAGACACTTCAACAGCCATATGTTCATGGAACAAAAGGAAGCCACAGAAGCTCCCAACAACCTTAGGAACTGTGAACTCAAGTGGTGTGATGATGGAAAAAAGAACACCTTCCTTGCCCCATTGAGCAGGAATGAAGAAAGAAGAAACTATGCCGCTGAAACCGGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAACAGAAGCAGCATGTATCCTGAAAGGCTAATCACAGAAAACCAATCGGAAGGTGAGTTCCAGCACCGGAACAGAATCAAGACAGAAACAATGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGATGCCAGCTTCTTACTTTGTAGCAGCAAGATTGGACTTAAACAACCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA


Promoter Sequence:
>Vu_24669::LG6:10312568-10314568(-)
ACTTCACTTTATAAACCAGTTTTGTAAGATTGAGTTATACTCCAAGTTTATTTTTTAATATAATATTATAATAATGAGTTAGAACCTATTCTAAGTAAAATTTATTATTTGTTGAACCACCACTAACTATTGTGTCACCAGCTATCGAACCTCTTATTAATCTCTAGTCTCATACTAAATATATATGTTTTTGTAAGAGGTGTGTTGGAGATTCTACATTTTGAAGACATAAGTTGAAGATTACATCTTGACTAGAGATAAGAAGATTTCATATTGTATAAGTGGATCCAAACCTCATATTGCAAGTCAGTTTTATAAGGTTGTGTTAGACTTTAAAAATATACAAGTGAGTTTCACACACACACACACATATATATATATATATATATATATATATATATATTAGAGTGTAATTTATTCTGTATTAGCTGTTAATAATATAATCGTTATTCGTGGAATTTTAATGAGAGTACTACACCACTTACCCTTACAGCACAGTGTGCAACACTAAGCTAACTTGTTTCTTTTCCAATTGAATAATGGAGATTTGCATGCACTTGACACATGCATTGCCTGAGGAAAGCGTGGCTTTAATTAAAACTGAATCGGATTCTAATACATTTTGTAATTATTTTGGTAGTGGGTTAACATGGTATATGCCATTTAATGAAAGGAAAGTTGGCCATGGATAAGAACAAGTTTATAGAGGAAAAAAGTAAAAAGTGAGTGTGGTAACATAAGGAATGACAAATGTACCTATACTTACACAAGAATCAGCTACATTAACCATGGTACAAGTCAAGGGCAAGGGAAGTGGTCCTATGCAGTAGTACTGTGTTTAACCAAATGCAAGTATAAAAGCAAGTACAATTCTTCTATCTTTCCCTTTTTATTAGGTCCCGCCTACTTAGGATTCCAGAGGATGGGGCCAGAGGTTTTGTGCCAAAGAAAGAATGAAAAGTTCAGGGTCCATCTTCCTTATATTTTAAACGGTGCAGGCTGAATAAGTACCAAACTTATTGAAGGAGACAAAACAGAACGTATTCTTATTCTATTCCTTACCTCCAAACAGTTCCATGAGAAGCATCTTCCACAATTTTTTTTAACCTTCCTTTGCATGCCATGGTGCTCTAGTCAATGGAATCCTTCAGCTGCAGTTCTTCATATATAACCTCTCTCTCAAAACTTTGCCAAAGATAAACCTTGCCCAACCTCATATATCATGCTAATAAAGAACTATGTATGTACATTAAGAAAGGACTTGTAAAATGGCAGCAAGATCAAGGTTTGAAACAACAAATTTAGGCTTCTAAGTTCTAAGAATCTTCCTCTAAAACAAAAATAATGGCTGTTCCAAGTCGAGAGGGATATCAGATTCTCCAGAACCAAGTCAGAAAAAAAAGGAAATACTCCTTCAAATGTGAGCATATGATTCCCACTTTTACCTGGCAAACGAATAAAAATGCATATTGGGTTAAAATTTGAAGGATCAATTCTGGAACCTAATGCAGTTTAGAAATTGATATTTGCACATAACTTTTTTTACATATCTAAATGTTAAAAATGTTTTGATCTATATGCAATTCCTGCACAGGAAACCCATGATGTGTGTGGAAAAAAGGTTGTGCATGGAAATAAAAGTAGACTATTTCCGAAGTTTTATTACTGCTGTGGAACTCAAATGGAAAGTACTATCTGAGAATGTAAAATGGAACTAGAAAATGGGGTCCACTGGTGAACAAAAGTAAGAAAGAATAATATCTAATTTTCAGGTCACCGCACAAGGATTAAGTTGGGTTTTCTATTGGTTCTATCCAAGATTCCATTGGATTACCAGCTCCCCTCCAGCTCTCATATAAATACCAGTTTCAGCATGATTTCCACTGAAGAGAAGTGTGTATAGGAGAAACAAGACAAGCACAACAAGCATTCAGAAATTATCTTATTTGTTAGTTCCAGGGCTTGTAACAATTAATCTTGAAAGTGATCAAGAGAATAAA


Gene Sequence:
>Vu_24669(-)
CAAGTCATCAAGGTAACTACATAACTTGTGTTCAGCTTTAGAAATTAAGTTAGTTTTTATATGTTATAGGGTGCTTATAAGTGGCTTTTGCAGGTGGAATGTACCATCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGTTCTGGAGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACAGCAGATCTTCATGCCAGATTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAGTGAGTACACACGTCACCTTGTGGATCATCAAATCTTGAGGATCATAGAATTTAAGTTCACTAATGCAATTACAATATGTCTATTGCAGAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATTTGAAGAGCCATCTTCAGGTACGTGCTGACCAAAATTACTTTATATCAATTATACACTGGTGCAATTACTGATATTGTTTTCCTTTTGTCATCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACACCGTGACACACAAAATGAGTAAGATACTAATCTCTTCCATTTTTCTGATCTATTAACGAGCCATAGAGCTGTTATTGATGGTTAAAACTACCTTATCAGCAACAAGTGCAGCAACTGGGGAGAGACTTTCTGAAACCAGTGGAACTCACATGAACAAATTAAGCCTTGGACCGCAGGCTAACAAGTAAGAAAAACTGAACATTTTTCACATGCTTCATGTAATCTTGTTTGTGGAAGTGATGGTAATTTTCTATGCTCTTTATGCAGAGATTTGCATATAAGCGAGGCGCTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTGAAATCTAAGTGGCAACTTACTAAGCATGCATTTTCCATTCCATAATTATACAAACAAATCAGTCTATGCACTAATGTATGATGTGTTTTAATTTGTCATCCAAATGCAAACTGTTGTATATCTTAAATTTATTAACTTTTACAATAACTACCTTAAAAATCTTATCAAAGTATCCTGAACCATTTCAGGTACAAAGACACTTGCAGCTTAGGATTGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAGACTCTTGGCAGACAAAATTTGGGAATAGTTGGACTTGAAACTGCCAAAGTTCAACTGTCAGAGCTGGTGTCAAAAGTCTCATCTCAGTGCCTTAACTCAGCATTCTCAGAGCTGAAGGAATTGCAAGGATTTTGCCCTCAGCAAACACACACCAACCAGCCAAACGATTGCTCAGTGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAGCAAGAGATTCAAAATGGCTTTAGACACTTCAACAGCCATATGTTCATGGAACAAAAGGAAGCCACAGAAGCTCCCAACAACCTTAGGAACTGTGAACTCAAGTGGTGTGATGATGGAAAAAAGAACACCTTCCTTGCCCCATTGAGCAGGAATGAAGAAAGAAGAAACTATGCCGCTGAAACCGGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAACAGAAGCAGCATGTATCCTGAAAGGCTAATCACAGAAAACCAATCGGAAGGTGAGTTCCAGCACCGGAACAGAATCAAGACAGAAACAATGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGATGCCAGCTTCTTACTTTGTAGCAGCAAGATTGGACTTAAACAACCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGAGAAGATAGAAAAAACAGTTATGATTCTTCAAAATTTGATCAGCATAAAAGGAAAATAGTAGGAACAGTGTGTTGCTAGTTGTTACTGCAATTCAATATCAGCTGTTCTTCCGTTCAATCCTACCCTACAATACCATAGATAAGTAATTTTTAGCCAATTGAAATAAGTTGCCACAAGAAGACCAGTGATCAAATTTGTAAACAATCATTAGGAAGGAGATAGTTCCAGCAACATTCGGTTTTGTTCTACTTTATTCAAAATTCAACATCATTCAAAGAAGTTTGTAACATGCATTATTCTCGAGACCAACTTCTTTTCGAATTAAAAATCAAATTTTTACTCTAAT

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