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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24546 LG6 8974537 8976306 PREDICTED: transcription factor ILR3-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 8974565 missense_variant p.Ser10Tyr
T/A 8974729 downstream_gene_variant
G/T 8974735 downstream_gene_variant
T/G 8974738 downstream_gene_variant
A/C 8974742 downstream_gene_variant
T/A 8974790 downstream_gene_variant
A/G 8974866 missense_variant p.Thr60Ala
C/A 8975048 downstream_gene_variant
G/C 8975158 downstream_gene_variant
T/A 8975166 downstream_gene_variant
G/A 8975312 downstream_gene_variant
T/A 8975314 downstream_gene_variant
G/A 8975431 downstream_gene_variant
C/G 8975695 downstream_gene_variant
G/A 8975966 downstream_gene_variant
G/A 8976029 downstream_gene_variant
G/C 8976047 downstream_gene_variant
G/C 8976079 missense_variant p.Asp159His
G/T,C 8976082 stop_gained p.Glu160*
T/C 8976189 synonymous_variant p.Val195Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24546.1
MDMNSSSGASGWLYDYGFDIPVAGADFMVVADSGGFSWGPQNHTLKGPSHTRSLGNGILTGFSTVLENSPSKRLKTESCASGAKACREKRRRDKLNDRFLELSSILEPGRPPKTDKVAILSDAARVVVQLRNETERLKEMNDELQGKVKELKAEKNELRDEKNMLKEEKEKLEQQVKLTNIQNSFLPQGPAAKGQVGTHKLIPFIGYPGIGMWQFMPPAAVDTSKDHLLRPPVA*


CDS Sequence:
>Vu_24546.1
ATGGACATGAATTCCTCAAGTGGTGCCTCCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCCGGTGCTGACTTCATGGTTGTAGCAGACTCTGGAGGTTTTAGTTGGGGGCCTCAAAATCACACCTTGAAAGGTCCTTCACATACGAGGTCGCTTGGAAATGGAATACTCACTGGATTCTCAACTGTTCTGGAAAATAGTCCTTCAAAGCGGTTAAAGACCGAGTCATGTGCATCTGGCGCCAAGGCGTGTCGCGAAAAAAGGCGAAGGGATAAACTGAATGATAGGTTTCTGGAATTGAGTTCCATCTTGGAGCCTGGTAGGCCGCCCAAAACAGACAAAGTTGCAATATTAAGTGATGCTGCTCGAGTGGTAGTCCAATTGAGAAATGAAACCGAGAGGCTTAAGGAAATGAATGATGAACTACAGGGAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAACTTCGTGATGAGAAGAATATGCTGAAGGAAGAGAAAGAAAAGTTGGAGCAGCAAGTAAAACTGACAAATATACAGAACAGCTTCCTCCCTCAAGGCCCAGCTGCTAAAGGACAAGTTGGTACCCATAAGCTGATACCTTTCATTGGCTATCCTGGAATTGGTATGTGGCAGTTTATGCCCCCTGCTGCAGTTGATACATCGAAGGATCATCTGCTTCGACCTCCAGTTGCATAA


Promoter Sequence:
>Vu_24546::LG6:8972537-8974537(+)
TCAAATAAATACACAAGGCTGCTAATTTTAGTTTCCCTTGTTGTATTGTATTCTCCCACGATTCTATTCAACAGGTTATTTATATTATTATTCATAAATGCTGCAAAACAAAGACTTCACAAAAACTAACCTAAATAACATTCAAAACCCAATTCCCAACCACACCAAGTCCAAGCTAAAAACAACAAAAAAAATAAATAAGTCCAACAAAAATACCTGTACATCTTTCACTTGCATTTGCCGAATAAACTCTATAAACATGTCTGGGGAGAAAAGGAAAGCAAAATCAAACTCTAAAACAAAACAAAATATTGTTACAGAGTATTTTAGAAAATGAGAAATGAGATGGTACATATATATACTTCAATGTTGACCCCTATTTAAACCACTTGAACTAGTTTCCACAGAAGAATTAAAAATGAATCAGAAACTAAAAAAAAAAAAAAGAAAACTCAAAAAATTTGAAGTCGGTAAAAAAATTTGGAGGTGTAATAATATTGAGCTATGGATGTAGTATCAGATCATTCGTTCCTTCTTTTCTTCGGTTTAAACTGTATCCCAGCCTTACATTCCAACATATTTTTTACAAACGGAAGACACTGATCTTACCTTAACACAAATTCTAGGACATCCCCAATTTTTTTGTAATACAAATTTCATTGACAAATGTAAACACCAATTCGAAAACGAAAACAGAAACGAAGGCTTACATGTTGTAGAAGACGAAAAAACGCACACGAGCCGCTCGATGATTATAACGACGACTCACACAGATCGCTCAATGGCAGTAATGAAATGGAAACTGAAAGAAAAGAGAAGGAACAAAGAAAACGAAGTCGAGAGGAAGGAGAAAGAGAATGTGAATACAAAAATGAAAGTATTTTTTTACCCTAAAACAGACTCTGGTTTTTTTATCCCAGTAATTCTCTACATTTTTACATGTGATATGCCACCCTCTCGGTTATTACATAATATTATTTAATTTAGCAATAATTTAAGCAATCTACTATTAATTAAAGTAGGAGTGTCATAATTTTTTGTGAGTTTAATCTCTGATTTAAGTTATTAATTTCTAAAATGATATTTTTATGCGCATCACGTCACGGCAATGAACAGCATGTTTCAAGCCACCGGGAAAGGGCTAGTTGTATTTTATTATGCATCCAAAGAGCCTAGATGAAGACAACAATGAAAGAACTTCACATTATATTAACACCAATGAGCTAATCACTATTATGACATTATCATTACTATTAATAGGATTAATACGTAAATTTTAATAAGGTGATTTCTAGAAACATCACCACACCTTTGGTATCCTAACCTCATTAAATAGTCCACCGTCCCCAAAAATGACGGCTCTTACGATAAGAACGGGCTATGTTAAAATAATCAAAGATGGTAAATTAAGATGGTATTTATGCGTAATTACTTATCTTGAACAAACTTTTATACCGCATTTGAATGCTGATTATATACGTTGATCTGAGTGATCGAGTAGAATCAGTAGCCTTAACAATTTCTGTGTCTCGTACCAAAAGAAAAATACTGTGCAGAATGTCTTTACGTTAGCAACAAAAAGTTACAAAAGTGAATGTTGTTTTATGAAAAATAGTAACGCGGCTGAATGGTCAACTCGGCTTAATTTGCATGTGAAACGGCCCAACACAAAGGCATCATACAAAGGAAGAGATGGCGTTTACTTAGTTCCTCTGCACTGTAACAACGTAAGGCAGTGTAATGCAATTGGCCATGGTGCACTGTTCTAGAATGACGCACAATCTGCTGCTTCCGTCACAGCCCTCATCACCACAATGACTTTCTCTTTACACTTACAACGGAAGATAAGGAACAAACAAGTAAAATAAACAAAAGCCAAAGGAACAAATGAATAATGTTGTGTTACATAGTATTATAATATTCTCACGCTATTCACTGCTCTCCTAGCCTCAGTTCAGACACAGTGCACTCTTTTTCTCTCTTCTTGCTTGCTTCCAACA


Gene Sequence:
>Vu_24546(+)
ATGGACATGAATTCCTCAAGTGGTGCCTCCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCCGGTGCTGACTTCATGGTTGTAGCAGACTCTGGAGGTTTTAGTTGGGGGCCTCAAAATCACACCTTGAAAGGTCCTTCACATACGAGGTCGGTTTGCTTTGTAACTTTCTGTTCTTTTACTTTCTGCTTGGTTTACAATTTGCACCAAGTGTTGTTGAGCATGGGAATTGTAGTGAATATTGTTTTAATTAACCTTTATTTAATACCTAGAACTGCCTTATGATGATTGTTTTATAATTGCAGCTTGGAAATGGAATACTCACTGGATTCTCAACTGTTCTGGAAAATAGTCCTTCAAAGCGGTAATATCTCTTCTGGCTCTGTAAAGAATATATGAAGTAAAAGTTGTACCTCCACAACTGTTTCTATGATTTGGAATCTTGGCATGGAGCTGGGATGTTCGAGTTATCATCACCAGGATAATTTCCAATTTTGTACAGTTTCATTGAAGCCTCCCATGACATGTTCTATGCCTTAAGGGATTCTACAGCAATAGGACACCCAATTTGCTAGAACTTTACATAAGGATTTTCTCCATGCTGTAAATATAGAAGAGGAAATTAATTCTATGTATTACAGTCAAAGTGGGTTTGAGTGAAAAGAATCTTATAGTGCTCTGAATTTAGTTGAGTGATTCTTTCAATTGTGTCTAACCAATTATTATTAGTCATAGTGAAGAATATGGACCTCAAGAATGTTTCTCATGTGTTAATTGATGTTCATGTATTTGGAGATTAGGAATGACTACTATGTTTCTTTGTTAGTTATCAGTGACTATGTTAAACTCTAGTCAACTAATACAGGGTTAAGTATGTTTGGTTACAAAGAGTTCAATTAGTGACTGTAAGTTTGACGTGATTCTGTGCCTACACTAACTTGAAATTTGTGATGAATTTTCCGGTCTCTTTTTCTTTTACCTCTGTCATCTTTCTCTTTCATTCATTCTTTTCCCTAAATCCTTTGGAACTCCTACTGCAGGTTAAAGACCGAGTCATGTGCATCTGGCGCCAAGGCGTGTCGCGAAAAAAGGCGAAGGGATAAACTGAATGATAGGCATGCTATTACCTTGCGTCTTATGTGATTAAGTTTACTGTTCAAAATCTCATGTCTTCAATTTGGCATGATTTTAAGGTTTCTGGAATTGAGTTCCATCTTGGAGCCTGGTAGGCCGCCCAAAACAGACAAAGTTGCAATATTAAGTGATGCTGCTCGAGTGGTAGTCCAATTGAGAAATGAAACCGAGAGGCTTAAGGAAATGAATGATGAACTACAGGGAAAAGTTAAAGAATTGAAGGTGATTTTCTGTTTCTAGAGATTATTTTACTTTGATGAATTGACTTAGTAGAGTTTAGTTCTGTTTGGAATTCGATTGCTAAGCTTTCTGTATCAAATAAGGGGTGACCATGACAGTATATGTTGATTGTGTGTAGTTCTGAACTTTTGTTCCTTGCAGGCTGAGAAGAATGAACTTCGTGATGAGAAGAATATGCTGAAGGAAGAGAAAGAAAAGTTGGAGCAGCAAGTAAAACTGACAAATATACAGAACAGCTTCCTCCCTCAAGGCCCAGCTGCTAAAGGACAAGTTGGTACCCATAAGCTGATACCTTTCATTGGCTATCCTGGAATTGGTATGTGGCAGTTTATGCCCCCTGCTGCAGTTGATACATCGAAGGATCATCTGCTTCGACCTCCAGTTGCATAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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