Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24541 LG6 8920064 8920823 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, protein dimerization activity, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/A 8920151 missense_variant p.Ala30Thr
C/T 8920156 synonymous_variant p.Asp31Asp
C/A 8920190 missense_variant p.Pro43Thr
T/C 8920196 synonymous_variant p.Leu45Leu
C/T 8920203 missense_variant p.Pro47Leu
C/T 8920212 missense_variant p.Ala50Val
T/C 8920233 missense_variant p.Val57Ala
C/T 8920243 synonymous_variant p.Thr60Thr
C/T 8920248 missense_variant p.Pro62Leu
A/C 8920285 synonymous_variant p.Pro74Pro
C/T 8920307 stop_gained p.Gln82*
C/T 8920315 synonymous_variant p.Arg84Arg
G/A 8920333 synonymous_variant p.Gln90Gln
C/T 8920334 missense_variant p.Pro91Ser
G/A 8920341 missense_variant p.Arg93Gln
G/A 8920342 synonymous_variant p.Arg93Arg
G/A 8920347 missense_variant p.Arg95His
C/T 8920378 synonymous_variant p.Asn105Asn
C/T 8920385 missense_variant p.Arg108Trp
C/T 8920388 stop_gained p.Gln109*
C/G 8920391 missense_variant p.Arg110Gly
C/T 8920397 stop_gained p.Gln112*
C/T 8920427 stop_gained p.Gln122*
G/A 8920443 stop_gained p.Trp127*
C/T 8920472 synonymous_variant p.Leu137Leu
G/A 8920483 synonymous_variant p.Ala140Ala
C/T 8920516 synonymous_variant p.Phe151Phe
C/T 8920517 missense_variant p.Arg152Cys
G/A 8920520 missense_variant p.Val153Met
C/T 8920540 synonymous_variant p.Ser159Ser
G/A 8920546 synonymous_variant p.Ser161Ser
C/T 8920568 missense_variant p.Arg169Cys
C/A 8920576 missense_variant p.Asn171Lys
G/A 8920580 missense_variant p.Ala173Thr
C/T 8920581 missense_variant p.Ala173Val
C/G 8920612 synonymous_variant p.Arg183Arg
G/A 8920618 synonymous_variant p.Gln185Gln
C/T 8920622 synonymous_variant p.Leu187Leu
A/C 8920630 splice_region_variant&intron_variant
T/C 8920635 splice_region_variant&intron_variant
C/T 8920644 intron_variant
G/T 8920654 intron_variant
C/T 8920691 intron_variant
C/T 8920693 intron_variant
C/T 8920697 intron_variant
A/G 8920716 intron_variant
A/G 8920723 splice_acceptor_variant&intron_variant
C/T 8920739 synonymous_variant p.Thr193Thr
G/T 8920763 missense_variant p.Lys201Asn
G/C 8920778 missense_variant p.Lys206Asn
C/A 8920784 missense_variant p.Ser208Arg
C/G 8920801 missense_variant p.Ser214Cys
C/T 8920806 missense_variant p.Leu216Phe
A/C 8920816 missense_variant p.Tyr219Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24541.1
MYSGDGSSLDPMFSGTSLQSLLSLNPSLFADGFPTLASLTDDPTLIPQTAEPPKILVPKTEPSQPFKFFPQYHPTPFLRLPQLRSPEQPQPKRQRLESPVIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQGTLLEEAYKYVRFLQAQFRVLQSMPSHSSSSSPSFRQNSAVFVDLEKLNRSQLLQIGGTTTITTFPPKLFSTKLSFCLHFSTLSSYL*


CDS Sequence:
>Vu_24541.1
ATGTATTCCGGCGACGGCTCCTCCTTGGACCCCATGTTTTCCGGCACCAGTCTACAGTCACTCCTCTCTCTCAACCCTTCCCTTTTCGCGGACGGCTTCCCCACCTTGGCTTCCCTAACCGACGACCCAACCTTAATCCCGCAAACCGCAGAGCCTCCAAAAATCCTTGTCCCTAAAACCGAACCCTCTCAACCTTTCAAATTCTTCCCCCAATACCATCCAACCCCCTTTCTCCGCCTCCCGCAGCTCCGCTCCCCGGAGCAGCCCCAGCCGAAACGGCAGCGTTTGGAGTCCCCGGTGATCCCGCAGAGCAACCTGGCTCGGCAACGCAGACAGAAGCTGAGCGAGAAAACCCGGTGCCTGCAGAAACTGATGCCGTGGGACAAGAAAATGGACCAAGGCACGCTCCTGGAGGAAGCGTACAAGTACGTGAGGTTTCTTCAGGCGCAGTTCCGCGTGCTACAGTCGATGCCCTCCCATTCGTCTTCTTCCTCGCCTTCCTTCCGCCAAAACTCAGCAGTATTCGTGGATCTGGAGAAACTGAATCGCTCCCAGCTACTGCAGATAGGAGGCACCACCACCATAACCACGTTTCCTCCAAAGCTATTTTCAACTAAGCTTAGCTTCTGCCTTCATTTCTCCACGCTTTCTTCTTACCTTTAA


Promoter Sequence:
>Vu_24541::LG6:8918064-8920064(+)
AAGTTGATAAATATAGAACAAGGTTAGTAGTCTCTATTTTGAAACAATAATTAGCACACTTTTGCATCAATTCTTTTGCATATACTTTCATTGAGAATAAACTCTTTTTCAATATTTGCTTTATGATTGAAACAAAAAATGACAATAAAGAATAGTCATGTTCTCAATCTATGAAAAAATTTTAAAAAAATTGCAAAAATATAATTAAATAGTTATAGTTATTTGTAATCAAAGTTTTCATTAATGAATTAGATCTAACCTAAGAATTAGATCGTTAAGTATCTTCCAAAATAAAGTATAGCCTCTATTTAATCCCTTCTTTAAAGTTTTCTATTACCAATTTGTTTTGGTTAATAACAATTAAGTTATATATACATGGGTATGTACTAAGTCTTCTCAAAATAGTTCATCTATTTTTATAAATTTAAATATGGTGCTCAAATAATGATATTCACGTAAAAATACCAAGTTTTTTTTTTGTTTTTTATGTGAAACAACGATTGAGGCATCACTTTTATGCTGTTAATAAATTTTTGAGTCTTTATAAATAAAGGTGAATGTTAAAATAAAACAATTATGGTTGATTAAGTTATGACACGTTGAATTAAGATGTAATATATTGTTAAATAATATCTGAGTTCTTATTAAAATCGATGCTTCCTTTGGAAAATGACAATTTTACACCTAAACTTTTGATGCTTTTGTAACATTCGATCAATGGTATTGTTGCTTTGGTCGTCTTTATTGTTGCCACATTCTCTTAACATTTGTCGTTTCACTTGATTTTTGGATAATGAAAAAGAAAAAATTACTTTTTTATATAAAGAAAAAACTATTTTTATCTAAATCATATTGGGCGAATAACTAAAACTAAATTAAACCATATATACTTTTGTCATATTAATGTTCAGAAACATAACACGGATCACCATTATTTATAAGCAAATCATAATTTTGAGATACCTTCTTTTTTTTCTTTTTTAAATGTAAAACCACGTTTGGTGCATATAATAATGATTGAGCATAGTGTTTCATTGTAACAAAATGCCACTGGAAGAACGTGTGAATAATGTGGAACAACTTGGTTCACTGATTCCCTTATAATTACCATGGAAGATGAAAGAACACGAAACATTACCTTTTCAGAATGAAGCATCCCAGCCGTCTGATGGTGATGACATGCAACGGTTGCGATGCAAGCCATGCCTCAAACCATAACTAAATAACAAGAAAAAGGAAAAGTTGACGACAACAACAGTGTCAGAATAATAAGAGGAAAAAGAACGACAAGAAGCCCAAAATTGTATCAGACGCAGACAAAATAAACAAACAAACAAACCAACCAACGTACACATATACTGTCATACCTGCACGCACCCATTCTTCTCATTCCACCTGTTACTTCTATTCTCATTCTCATTTTTCTCACTTTCTCTCAGGTAATGATATTAATTTAAATATTCTTTTTGCCTCATAATATACCTAACCTGTGCTTTTTTTTATATGTTCTTAAAAATAAAAAACAGGATTTGTTTAACGTTAATAAATCTTAATATTTAATAAAATCTAAAATTAATTCATCCATATCCTTTCTACGAGGTCACCATAGGTTTTGTGTAACGTTACGACTCCCTCACTAATAAACCCTACCAATTCATAAGCTTTATTCTTCAATCTAACAAATGAAATAAAAACCAATTAAAATTAATAAAAAATTAAAATATGACTGTCAAGTTTATTGAGATAATACATGGATTAGTTTTTTTATTTCAACTGGAAAGAAAAAAGAATCCAAATCATTCACCATTCTAATTAAATCTCTAATTATTATTGAATACTATACAGTATTGTTTATGGCTACATTAATTATCCATAATTAACTCCTTTCTTCTCTTCTCTCTCACCGTCACCAACCTATTATATATATACATATATATACCATTATATATCCCCATTTTCCTTATTCTCACTTCTTCCACTCTCATTCTCTCTGCAAATAA


Gene Sequence:
>Vu_24541(+)
ATGTATTCCGGCGACGGCTCCTCCTTGGACCCCATGTTTTCCGGCACCAGTCTACAGTCACTCCTCTCTCTCAACCCTTCCCTTTTCGCGGACGGCTTCCCCACCTTGGCTTCCCTAACCGACGACCCAACCTTAATCCCGCAAACCGCAGAGCCTCCAAAAATCCTTGTCCCTAAAACCGAACCCTCTCAACCTTTCAAATTCTTCCCCCAATACCATCCAACCCCCTTTCTCCGCCTCCCGCAGCTCCGCTCCCCGGAGCAGCCCCAGCCGAAACGGCAGCGTTTGGAGTCCCCGGTGATCCCGCAGAGCAACCTGGCTCGGCAACGCAGACAGAAGCTGAGCGAGAAAACCCGGTGCCTGCAGAAACTGATGCCGTGGGACAAGAAAATGGACCAAGGCACGCTCCTGGAGGAAGCGTACAAGTACGTGAGGTTTCTTCAGGCGCAGTTCCGCGTGCTACAGTCGATGCCCTCCCATTCGTCTTCTTCCTCGCCTTCCTTCCGCCAAAACTCAGCAGTATTCGTGGATCTGGAGAAACTGAATCGCTCCCAGCTACTGCAGGTACTGGTTAACTCACCCGTGGCACAGACCATGCTATATTCTCAAGGTTTTTGTGTCTTCTCTCTCGAACAGTTGTCTCTCCTCAGAAAATTATCAGATAGGAGGCACCACCACCATAACCACGTTTCCTCCAAAGCTATTTTCAACTAAGCTTAGCTTCTGCCTTCATTTCTCCACGCTTTCTTCTTACCTTTAA