Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_24539	LG6	8886251	8887633	PREDICTED: scarecrow-like protein 32	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	8886380	synonymous_variant	p.Ser418Ser
A/C	8886386	missense_variant	p.His416Gln
A/G	8886397	synonymous_variant	p.Leu413Leu
T/C	8886762	missense_variant	p.His291Arg
G/T	8886763	missense_variant	p.His291Asn
C/G,*	8886768	missense_variant	p.Gly289Ala
T/A	8886771	missense_variant	p.Lys288Met
A/G	8886914	synonymous_variant	p.Pro240Pro
A/G	8886962	synonymous_variant	p.Asp224Asp
G/T	8886968	missense_variant	p.Phe222Leu
T/G	8887075	missense_variant	p.Thr187Pro
C/T	8887081	missense_variant	p.Glu185Lys
A/T	8887193	missense_variant	p.Asn147Lys
T/C	8887294	missense_variant	p.Lys114Glu
G/T	8887295	missense_variant	p.Phe113Leu
G/C	8887527	missense_variant	p.Ser36Trp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_24539.1

MHVTSSHSHMKAELKGTSVSFQNPTTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIFKAITGYQRVHILDFSITHCMQWPTFIDALAKNPEGTPSLRITVPFCRPHVPPLVNVSIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTPVELSDESSNFHFEAMLSLLNPTTLNLREDEALVINCQNWLRYLSDDRKGSHQSLSLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSGQRAEFESDIGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLNVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEIRDHVGMDASLP*

CDS Sequence:
>Vu_24539.1

ATGCACGTCACGTCCTCACATAGCCACATGAAAGCTGAGCTTAAGGGCACGTCCGTTTCCTTTCAAAACCCTACTACTCTCTTTAACACACCTCACAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTGGGAAGCCTGGATGGAGCTTGTATTGAGAAGCTCTTGCTGCACTGTGCCAGCGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAGGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACCAACCAAAGACTCACCTCGTGGTTTCTCAGAGCATTAATCTCTAGGGCTTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGCTCATGAGCGTCACCGAGCTGGCCGGGTATGTGGATCTTATTCCTTGGCATAGATTTGGGTATTGTGCATCCAATAATGAAATTTTCAAAGCAATAACGGGGTACCAAAGGGTACATATTCTAGATTTTAGTATAACCCATTGTATGCAATGGCCTACTTTTATAGATGCATTGGCCAAAAACCCTGAAGGAACTCCTTCACTCAGAATCACAGTTCCATTTTGTAGACCACACGTACCCCCCCTGGTCAATGTATCTATACATGAGGTTGGTTTACGTTTAGGGAATTTCGCCAAGTTCAGAGATGTCCCTTTTGAATTCAACGTTATAGGAAACACGGGACCGTTAACACCTGTGGAATTGAGCGATGAATCATCTAACTTTCATTTTGAAGCAATGTTAAGTCTCTTGAATCCTACTACGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAGAATTGGCTGCGCTATTTGTCTGATGATAGAAAGGGAAGCCACCAAAGTCTTTCCCTTAGGGATGCTTTTTTAAATCTAATAAAAGGTCTTAACCCCCGGATAGTGCTCTTGGTTGATGAGGATTGTGACCTTAGTGCATCTAGTCTCACGTCAAGAATCACCACATGTTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACCTTTTTGCCTAAAGATAGTGGTCAGAGGGCAGAGTTTGAATCCGACATAGGCCAGAAGATAGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATCGAGAGGTTGGAGTGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTTGGTTACCTCAATGTTCCATTTTGTGATGAAACTGTTAGGGAAGTTAAAGGTTTGTTAGATGAGCATGCCAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGCTAGTTCTCACATGGAAAGGAAACAGCTGTGTCTTTGCGACAGCTTGGGTCCCCTGTGAAATAAGGGATCATGTTGGAATGGATGCAAGTCTGCCTTAA

Promoter Sequence:
>Vu_24539::LG6:8887633-8889633(-)

GGTGTGGTGGTGGAGGGAGCAACACCCTTCCTAATAAAATCACTTTAAAAATAATTTGGTTCCAGTTAGCTCATGGGTCGAACTAATTAAACTTAGAATGTTGTAATTCAATTTATATAACACTTTATATTTAATCAAGATAGAAAATTCACTTTTCATTTTCGTCTAAACATGTTAATGGTAAGATGTATATTAAAGTTAAAATAATGTCAACATGTAGGTTAATTGTAAATAAGGTAAATTTAAAATAGGGTTAACTATTTTTTGTCCATAAATTATAACACAATTTTGATTTTATTTTCCGTATCAAACTTTAATCGTGATAGATTCTCACATTAAAAAAATGTAGTCTTTTTTGTCCAACAATTTTGACTAATTTTTTATATGAAAAACAAAAAATCATGGATGCAGTTCACAAGTTCTCCTCCGTGTAATGTTATGTCAAAAATTAGTTTAGAACTCTAATATGTTGACAACTTTTTTACAATAAGTCTGCGTCACTATTTTATTGGCTTGTTTAAATTTATTTTTAAAAAAATATTTGAAACAGACGAATCACGAGTCACCGTATAAGTGTTATAAAAAGTTGTTAAAAAAACATTTTCCATTATTTAATGTTGTTAGGTAAAAAAGATCACATCCATAGACAAAAACATAATTAACTCTTTAAAAATATTTTAAAAAAATTGAATGTACTTGGATTAAAAGAATTATTTATTTTCGTAGACTAAAATATATCATCTTAACTTTTTAAATAATTGGCATAAAACAATATTTTCAAAGAAGGGCATGTTATAACATACTAAAACTTGATTGAATTATATAGAAAAGAACAAAATCCGGAATAAGTACGTGGGTAATTTAGTTAACTGTTCTTATTTTAGGTATTGCAAGTGGATATCTTCAAAGAAGAAAGGAAAACATAAATATAATCGGTGGAAATAAAAAGGTATATAAAAGTGACCCAAATAATGTCTTATAGGAAGTGTTCTTGTTTGTCTTTAGTTTTGGCACAACTCAGTTATATTTAATATTCTACGTATATTAATTATATGCATTATGTAAGAGTCAGGGAATGAAGGCAACAACAAATTCAGATTTGTTGCAGTAAACATGTATATGATCTTCTTTAAAATAGCCATTCCATGAAAACGAATTCGACAAGAGTGGGCCGGCTAGTACACCCCTTTTAACCTATTCATCATCTTCTGTTTTATTTTGCTTATAATAACCATAATCATTACTACAGAACAAATCAAGCTAATCCAAAATAAACGAAGAAGCAGCCAAATTAGCCATACACGATCTTTTCATCACTCAAAAACTTACCAATGCATGCGCCATTACTTTTCCAATATTCATCCAAAAGGGAAACGAAAGATACAACAATATATATTCTGAAGAAGAGACGTAGCTGAAAATTCTTCCCTCAACTTTATATAACTAGAGCCAAAGTTTGACCATCCTCAACTCACTTTTGCCATTGATGCACCTCATAATTCACCAATCATGCCACTAGTTTATACCAGCTAAATCATTTTATAATCATATACTGATTAAACTCTACCCAGAGTCCTGTACTTCAGTCATGCGTATGCTAAAACCCAAACTAGAAACTAGAAACTTTCTATATAATATCTGCATTTTAAACATGTATTTTTCTTTTTAGTTAATCCTGTTTAAATGTGAATACTTTTAACAATCGAATTCAAATATACTAGTTAGCTGCTCTCTCTAGTGGACCTAACCAAAGTTGTGTATGTATCTTGATGTAACCCTTCATTATGATAGACCCCTTGTTTTGCTATAAATATGTTTCAAGGATTCACACAAAGAAAATATATAATCAAATCTAGGTTCCTTCCGTTTTGCCTCTCTACCTTTCCATTCCAGAACTCATCAGTTAAACCATCTTAATCTAGCACAACAGCATAGAAACCTACCTTACTCTTCAACCACTTCTTCTCCACCGTTTCTCATTTCTCTCTACTTTAGACTCC

Gene Sequence:

>Vu_24539(-)