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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24428 LG6 7581975 7586092 hypothetical protein TEA_009066
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Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, protein phosphorylation, cell division, protein phosphorylation
Cellular Component   located in   plasma membrane, plasma membrane
Molecular Function   enables   kinase activity
SNP Position Effect Amino acid change
G/T 7582042 missense_variant p.Pro297His
A/G 7582184 synonymous_variant p.Leu250Leu
T/G 7582359 upstream_gene_variant
A/G 7582573 upstream_gene_variant
G/T 7582621 upstream_gene_variant
T/A 7582905 upstream_gene_variant
A/T 7582952 upstream_gene_variant
T/C,G 7583209 upstream_gene_variant
C/A 7583313 upstream_gene_variant
T/A 7583339 upstream_gene_variant
T/G 7583411 upstream_gene_variant
A/T 7583461 upstream_gene_variant
T/C 7583572 upstream_gene_variant
A/G 7583573 upstream_gene_variant
T/C 7583716 intron_variant
A/C 7583785 intron_variant
C/T 7583817 intron_variant
T/C 7583904 intron_variant
G/C 7583985 intron_variant
C/A 7584085 missense_variant p.Arg182Ile
G/C 7584113 intron_variant
A/G 7584202 synonymous_variant p.Pro176Pro
G/A 7584232 synonymous_variant p.Ala166Ala
T/A 7584258 stop_gained p.Lys158*
T/C 7584260 missense_variant p.His157Arg
A/G 7584363 intron_variant
G/T 7584442 intron_variant
T/A 7584463 intron_variant
A/G 7584628 missense_variant p.Trp111Arg
A/T 7584650 stop_gained p.Cys103*
C/A 7584745 stop_gained p.Glu72*
T/G 7584777 stop_lost p.Ter61Serext*?
T/C 7584863 intron_variant
A/T 7585017 intron_variant
G/T 7585018 intron_variant
A/G 7585066 intron_variant
A/G 7585170 intron_variant
T/C 7585203 intron_variant
A/G 7585365 intron_variant
T/C 7585403 intron_variant
A/T 7585428 intron_variant
G/A 7585431 intron_variant
G/T 7585452 intron_variant
T/C 7585454 intron_variant
A/C 7585488 intron_variant
T/C 7585572 intron_variant
A/C 7585574 intron_variant
G/C,A 7585575 intron_variant
G/A 7585578 intron_variant
A/T 7585586 intron_variant
A/G 7585712 intron_variant
C/T 7585778 intron_variant
T/A 7585780 intron_variant
G/T 7585921 intron_variant
T/G 7585955 synonymous_variant p.Arg46Arg
T/G 7586030 missense_variant p.Leu21Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24428.1
MDEDYDYRRKAKIALIAILVLASLAVFALFVAFTYYCYILNKVSNRRKSLKKVEDANLNENSDFANLQVIAEKGLQVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNNGRKVAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPVNNSSQDSNPHDGYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREKVVKIMDPSLEGQYSMKEVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSPSKVGSCSSFHSPKLSPGPTST*


CDS Sequence:
>Vu_24428.1
ATGGACGAAGATTATGACTACAGAAGGAAGGCCAAGATTGCTCTCATCGCCATTTTGGTCTTAGCTTCCCTCGCCGTCTTTGCCTTGTTCGTTGCCTTTACTTACTACTGCTACATCCTCAACAAGGTCTCCAACCGACGCAAAAGCCTCAAAAAAGTTGAAGACGCAAACCTTAATGAGAATAGTGACTTTGCAAATCTGCAAGTTATTGCCGAGAAAGGACTTCAGGTGTTCACTTTCAAGCAGCTGCATTCTGCAACAGGGGGCTTCAGCAAGTCGAATGTCATTGGTCATGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAATAATGGCAGGAAAGTTGCCATTAAATTCATGGATCAGGCAGGAAAGCAGGGGGAAGAAGAATTTAAAGTAGAGGTGGAATTGCTAAGCCGGTTGCATTCACCATATCTACTGGCATTGCTTGGGTACTGCTCTGATAGTAATCATAAATTGCTGGTGTATGAATTTATGGCCAATGGTGGACTGCAGGAACATCTTTATCCTGTTAACAACAGTAGTCAAGACTCTAATCCTCATGATGGATATGCACTAACAGGGCATTTAACCACAAAATCAGATGTGTACAGTTATGGTGTTGTACTTTTGGAGCTGCTCACTGGCCGAGTGCCAGTAGATATGAAGAGACCTCCCGGAGAAGGTGTTCTTGTTTCTTGGGCTCTGCCTCTTTTGACCGATAGGGAAAAGGTTGTAAAGATTATGGATCCTTCATTGGAGGGACAGTACTCTATGAAAGAGGTTGTCCAGGTGGCTGCAATTGCTGCAATGTGTGTGCAACCCGAGGCAGACTATCGTCCTCTCATGGCAGATGTTGTGCAGTCATTGGTTCCACTGGTTAAGACTCAAAGGTCCCCTTCAAAGGTGGGAAGCTGCTCTAGTTTCCACTCTCCCAAGTTGTCCCCCGGCCCAACATCTACTTAG


Promoter Sequence:
>Vu_24428::LG6:7586092-7588092(-)
AGGTAATATCGTTTTTAAATTGTTATTTTTCAAAACTTTTATTTTATATTATTAATTAAAATTACACTTTAAAATAATAGAAAAATATGTTAAGAATCTAGGTGAGTTTAAGTTCAGAAAGAAATGAAAAGTTTTGTATGTGAATTGTGTTCGGATCTAATTAGTATTGTATTTTTTCAATAAACTCTCATCTATACAGTTACATAAATGATATCATAGTAGATAATTTTATTAATATGTTCGTACAAGTATAATATGATTCCTGGATAAAATATCTTTCAGGTTAAGATGAAATATTTGTAACAATTTTTTATTTTTCCTATGAGTGTTCCAAAGGGTAAGTCAATTGCTATACTGCAGGCCTATGGACTGTGAAGGTATCTCTCTAAAGAATTTTCCGAAATTCCAAACACTGTCTTCTTGTGTTGTTCTTTTCATCGCTCAACTTCTGCGTTGATTCCATTTTTCTAAAATTGAAGCTGAATTATGAATAGGGTTAAATATGTTTTTGGTCCTTTAATTTTCAGTGAAAATTGGAATTAGTCCCTCTTCAAAACTTTGCACTAATTTAGTCCTCAAACTTTAGAAATGTGTGAATTTAGTCCTTTTAACCAAATTTTGTTAACTTTATTTGATGTTTCAAACGCATTTCTTAGTTAACATTGAAGCAAAAATGTGTCAAAAGATGTAAACAACTTAGATGTTATCATCAAACGCACTTGAAATATCAAATAAACCTAACAAAATTTAGTTAAAAAGACTAAATTCACACATTTCTAAAATTTAGGGACTAAATTAGGCCAAAGTTTTGAAGAGGGACTAATTCTAATTTTCACTGCAAGTTAAGGGACTAAAAACATATTTAACCCTTATGAATATAATAAAATAAAATTTAAAAGTACAAAAAGTAGAATTTTAATATGTATAATTTATGTGAAGATTTAATTGCTTATTTGATTTTTACATTCATAAGTTTTTTTTCTATTTTGTATTTATTTTTAAAAATATTTTTATTTTATTTTAAAATAATATAAATTATATCAATTCAATCTATTTCTGTTAATTTAACGGAAGAAATTTAATTAATACAATTTATACTATTTAAAATAAAATAAAAACATTTTTGAAAACGAATACTAATAAAAACCAAATAAGCAATCAATTCTTATGTAAAAAGAATAAGTTTGATTAAGATTTACAAGTTGAAAAATGGTTCCCATATGCACGCATGAGTGGATTTATTTACTAAGGTTTTGTTTTGAAAAGGTGGTCGTATTAACGAGGGTGATGTTGTGTTGGAGGGAAGTGAGATTGAGACCCAAAAGCAATGAATGGGCAAAGTTTGTCCTATTTGAATTTAATAAATGGCATTTCCACTGTTTTATGTTCCCAATCCAAAGGTGCCGGCCTCATTTTTCTTTCAATTGCATTCTCAGGCCCCTCACCTTTCCCCTTTTTACACCTTTTCCATTTCATTCATAATATTTGGAGATTCAGCTGATATTTGAAAAAAAATAATTAAATATGTTTTTAATTTTTAAAAATTAAAATTTATTTATATCCAAAAAATTTAATATAATTAAATCAAAAGAATTACATTCATTTAATCAAAATGTACCCAAAATTAAAATGTAAACGAATTTTAATTTTATGAACTAAAACATACTTAATCCAAATAATATTAAATTAAGTAAATTTATTTAATTTGAAAAAAATATTTAAAATCTATCCTGGGGGAAGAACGAAAATAGCGTAAAATGAGTTGGTGTGGTAACGCAAATTGCAAGAAGTTGAGGGACGAAGATGCAAAAGAGAAATGTCAGTATCAGCACTGTAGGCGGCAGAGTAAAAAGGGCAGAGGGAGGGAGAGTGAGCCAAGTCAGAGTGTGTCTTGCAAGAAGTTCCGACGCAGCCTTTTAACCATTTTCGCTTCTTCTCGCATTGCCACTATGCTTTAACCATTTCTAGGGTTAGGGTTTTTGCATCTCAGAGAAATCTAA


Gene Sequence:
>Vu_24428(-)
ATGGACGAAGATTATGACTACAGAAGGAAGGCCAAGATTGCTCTCATCGCCATTTTGGTCTTAGCTTCCCTCGCCGTCTTTGCCTTGTTCGTTGCCTTTACTTACTACTGCTACATCCTCAACAAGGTCTCCAACCGACGCAAAAGCCTCAAAAAAGGTTTGGCTCTCTTTCGGAAATGTGCTGAACTTCAATGTTCGCTTTGTGTTCTTCTGCAAACGCCTGAGATTATTCGATGGAACTGTTGCTGACCATTCTGTACTAACATGCAGTTGAGTTTTTCAGTTTTTGAAAAAAAGTTGATAACATTCATTAAGGTGTCATGTAGGAGAATTTATTATACAGTTTGAGTTTTTCAGTTTATGAAAAAAATTAATAATCTTTAGGTGACGTGTGAGTTATTGTTGTTAATTCTTTTATGCGAGTTTGAAAATTTAAAGACTTGTCAGGTGGTGGTTTGGGTCTGTCTAATAATTTATTGTCATGTGGAGATTAGTTTTGATTACGGTGTGGTTTCGTCTGATTGAAGGGATGTGTTAGATTTAGCGCACCGATAGCAGGCTATAGTATCTCATGTGCTGTTTTATTTTGTTTTGATTGAGATTTTGCTCGTCTTATGTTTTCCCTCTCCAGGATTTGGACCTATTGGAAATTCTGATAAAACTGTGTTGTTATGATCCTTTTGTCAAAAAAATTCCTTTCATGGATTCACAAATAATTACGAAATGATGCCGTATTTTTATTCTGTTTTCAGTTCTCAACAAAGATGAATATTAACAAATTGACAACGGTGAAAATACCATTTTTTTCCTATGCAACTGTTTGAAAATACTGAACAAAGTGAAAATAATATGATTTTATTTTAATTATCCGTGAAAGCAAGGAAAGAAAATGGAAATTACCTATTCAAGCCAAGTTCATCCGTATATTTCCTTTGTATTTACATTTAATTAGTTTAATTAATGATCACCTATCAATCTCGACACTTGGAAAAATAGTAAGTATAAATATTAATACTGCCAGTTCATTGATATTCATTTATATATTTTTTTCTACCGGGTGTAATTAATTCTCATCTATATTGTTTTAGAGTATTCATTAGAAGGGAAAGGGAAGTACATTCAGTGTTGTTATGTTCCACCTTTTTTTTTCTAGATTTTCAACTGAGTGGTTTGAAAGTAGCTTCTTTCTGTGTTTTCACTTTAAAACTTTATATCTTTACTTTTTTTCTACTTTACTTGAGTAAATTGAGGTCCCACTTACTGACAGATTTTGCTTGGTTTTATATTAGTTGAAGACGCAAACCTTAATGAGAATAGTGACTTTGCAAATCTGCAAGTTATTGCCGAGAAAGGACTTCAGGTGTTCACTTTCAAGCAGCTGCATTCTGCAACAGGGGGCTTCAGCAAGTCGAATGTCATTGGTCATGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAATAATGGCAGGAAAGTTGCCATTAAATTCATGGATCAGGCAGGAAAGCAGGGGGAAGAAGAATTTAAAGTAGAGGTCAGTTACTTCTTAGAACATTTTGACCAGCGCTGCTTCTTTTCTAGAGACTATGGGAAAGGAATGCATTGTTCTTCATACTTATGCGTTTGATTACCCTTGTAATCAAATTAGTTCAATTTTTAAATCATACGCTTTTTGGCTGAATCAATGAATTAAATAGCTATAGATGTCTTTTAAATACATTTTGATAATTGAATTGAATTGGTTGCTTTCATGTCACTGTAGGTGGAATTGCTAAGCCGGTTGCATTCACCATATCTACTGGCATTGCTTGGGTACTGCTCTGATAGTAATCATAAATTGCTGGTGTATGAATTTATGGCCAATGGTGGACTGCAGGAACATCTTTATCCTGTTAACAGTAAGTTATGAAATATATATTTGCTAGAAAGCTTTTATTCTTTGCTGATTTAAAATGCTGCGAATGGATGATTACTAATAACTTTTCATACTTGACAGACAGTAGTCAAGACTCTAATCCTCATGATGGGTGGGTCTGTAATATGTCTATGGAATTTTGATGTAACAATCTCGGGTTTTGCTATATACTTAATCTGTTTGCTCAATAGACGGGCCGGAACAAGAAAAACTTGTTGAAAACCTTTTTTTAGTTTGAATGAGTAACACTCAGTTAGAAACATATATGATGATAGACTAATCTGTTAATCTTGCAGTATTGAATATTTGATTTAAATTGATGATATTATTGAATGGAAACAGCCTGCCAGCGTGTACCCAGTTTGACCATTACATTTGGTACTCTGATTAACTGATTCCTTACATACATTCCTCTGTTCTGTTGTGTAAAATTGAATGGCATGTCCATATAAGCAAAAAAAAGTTTTCATAAAATTCTCTCTTGCATTCTCTTTTCCGAACTTCTTCACTCTGAAAGGGTTTTTCTTCCCTTGTAAAGTTTATGATGACTATGGGTTGAAAGTGACACATTGAACTATGTTCCTCGCATATTACACAATATGGATAGTGGCCTTGAAGTGATAACCATGTTATATCAATCTGAATTTACATTATATGTTCGATTTGTTACTGCTTTTTCTGATGTCTACATTTTACATAGATAGCTCGTAGGTGCGTAAGTAATTTGTATGCGATCTTTGAGGAAAAGTCTTAAGTTGGTCAGTTTATGTATAATTGACAATCTTGCTAGAGAAGAGAGATTTACCTCCTGATTAATTTTGCACATCCTCCAATAAGTAGCAATACGTCCCTCTAAATCTCTAGGTGTATTGAACACTGTAAAAGGAAATTTTTGATGGGTCATGTATGGCATAAAGTTTGTTTCAAAATAATTTCTATTTTTAGTTTGTCTATTTGATCTATTATAAAAACTTTGCCAGAACCTGGAGCAAAAATTCTGCATATTATCTTTATTGATACCATGAAAACAAAATTTTGCTATGATGTGTTGGAGAATGTTATAATTGTTTGTTATTCCATATTTTTATTGATATTTTTTTACACATTTGAGATAAAAAAAATCTTGTTGTTTTGTCTACCCTTATTTTCTTTTAAAATTTTCATCAGTGGGCTATTTAATATAAAGTGTTCAAGAGTGCTGTGTCTGCAGCCATGTTTGCTATTTTTTTTTTGTTAGTTATTTTGTATGTTTGAGTTGGTTTTGATCAATTGATTTTCTTGTAGATTCTATTATTACACCCATAAAGTTGGATTGGGAAACTCGATTAAGAATAGCACTTGAAGCTGCTAGGGGGTTAGAATATCTTCATGAGCATGTCAGTCCCCCAGTTATTCACAGAGATTTTAAGAGCAGTAACATCCTCTTGGATAAGAAATTTCATGCCAAAGTTTCTGATTTTGGATTGGCAAAGCTGGGACCTGATAGAGCTGGTGGACATGTTTCAACTCGAGTTTTGGGCACCCAAGGATATGTTGCTCCCGAGTAGAAACCTCACCTTGTTTTGGTCATTTTGTGTAATCTTCATTCTTATTTCAAGAGTTTTTCTTTGAATAATTCATCTCATGAAAAACTAATTTTGTGTTTCTCAATGTTTGTTTGTGCAGATATGCACTAACAGGGCATTTAACCACAAAATCAGATGTGTACAGTTATGGTGTTGTACTTTTGGAGCTGCTCACTGGCCGAGTGCCAGTAGATATGAAGAGACCTCCCGGAGAAGGTGTTCTTGTTTCTTGGGTGCGTTTGTTACTTCTTTCAACAAATCAAGTTCTAAGTTGATTCTGTACTGCTTGGTGATAGTTATTTAATCAATTCGTATTTCCACCAATCTTAGCACTTCCTTTTTCTAACAAACTTGCATGTGCGATATGTGTTTAGGCTCTGCCTCTTTTGACCGATAGGGAAAAGGTTGTAAAGATTATGGATCCTTCATTGGAGGGACAGTACTCTATGAAAGAGGTTGTCCAGGTGGCTGCAATTGCTGCAATGTGTGTGCAACCCGAGGCAGACTATCGTCCTCTCATGGCAGATGTTGTGCAGTCATTGGTTCCACTGGTTAAGACTCAAAGGTCCCCTTCAAAGGTGGGAAGCTGCTCTAGTTTCCACTCTCCCAAGTTGTCCCCCGGCCCAACATCTACTTAG

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