Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_24311	LG6	5779810	5782791	PREDICTED: probable disease resistance protein At4g27220	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	5779882	missense_variant	p.Arg25Gly
C/T	5779976	missense_variant	p.Thr56Ile
G/T	5780042	missense_variant	p.Arg78Ile
A/G	5780113	missense_variant	p.Ile102Val
A/T	5780118	synonymous_variant	p.Val103Val
T/C	5780263	missense_variant	p.Cys152Arg
T/A	5780343	missense_variant	p.Ser178Arg
C/T	5780351	missense_variant	p.Thr181Met
G/A	5780376	synonymous_variant	p.Thr189Thr
A/T	5780383	missense_variant	p.Thr192Ser
A/G	5780419	missense_variant	p.Lys204Glu
T/A	5780527	missense_variant	p.Leu240Met
A/T	5780541	missense_variant	p.Lys244Asn
G/T	5780589	missense_variant	p.Glu260Asp
G/A	5780717	stop_gained	p.Trp303*
G/T	5781009	missense_variant	p.Leu400Phe
G/T	5781112	missense_variant	p.Gly435Trp
G/A	5781486	synonymous_variant	p.Arg559Arg
A/C	5781780	synonymous_variant	p.Leu657Leu
A/G	5781813	synonymous_variant	p.Val668Val
T/A	5781967	missense_variant	p.Ser720Thr
A/T	5782038	synonymous_variant	p.Leu743Leu
C/A	5782110	synonymous_variant	p.Ile767Ile
A/T	5782116	synonymous_variant	p.Thr769Thr
G/A	5782143	synonymous_variant	p.Leu778Leu
G/A	5782165	missense_variant	p.Glu786Lys
A/C	5782219	missense_variant	p.Thr804Pro
A/C	5782227	missense_variant	p.Leu806Phe
T/A	5782270	missense_variant	p.Phe821Ile
T/G	5782297	missense_variant	p.Cys830Gly
C/T	5782299	synonymous_variant	p.Cys830Cys
T/G	5782325	missense_variant	p.Leu839Trp
G/T	5782326	missense_variant	p.Leu839Phe
A/G	5782329	synonymous_variant	p.Glu840Glu
C/A	5782438	missense_variant	p.Arg877Ser
T/C	5782449	synonymous_variant	p.Leu880Leu
T/A	5782461	synonymous_variant	p.Leu884Leu
C/T	5782462	missense_variant	p.Leu885Phe
C/T	5782490	missense_variant	p.Pro894Leu
T/A	5782512	synonymous_variant	p.Val901Val
A/G	5782672	missense_variant	p.Ile955Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_24311.1

MATRIVEGLVKTSEIYSLILDILSRFNGFNDNVQMLEMKLEELCCLEHDINKELETEELEHGKKRKREVENWLRNVKRKKTEVHGMVQELRDCGMFRHLKLIVQVRKLTGQVTDLVERGRFPEGIVGSAQESRGCALLTTELAGAMFQKNVCKIWDWLMNDGVLMIGVYGMGGVGKTSVLTHIHNMLLTAVTNFESVFWVTISKSFSIHKLQCDVAKIVGIDISKESDERKRAARLSRALVRRKRCVLFLDDVWNHFPLERVGIPVRADGLKLVLTSRSLDVCRRMNCKNSVKVEPLSMEEAWTLFVDNLGQQTTLSPEVKQVARSVAKKCAGLPLAIITLARSMRGVEEICEWRHALEELRNTEAKHEEMEMEVLRVLRFSYDHLNDKMVQQCFLCCALYPEDFEIDRDVLIESFVDEGLVNGMKSLEAMFDEGNSIVNKLENICLLGKVENFVGGKKCMGLQDASSHIAISMMKRGCQHVEPMNNVEGYYVGSQLVKMHDLVRAMAINVIKVNNNFLVKAGLQLTKIPDEVEWSEDLEKVSLMCNWIHEIPTEISPRCPKLRTLILKHNESLTRISDSFFVHMAALEVLDLSFTDIEVLPKSVSDLSTLTALLLTSCKRLKHMPSLAKLQALLRLDLSFTAITEMPQGLEMLVNLKWLNLYAKDLVSSGKEVAKLTSLQFLILHWWSRKIKVKVEYTSCLRKLETFAANLYNMHHFNSYVKTMNIYGPRSYLLLLDTEESLGNSPWCCFAEVCFRKDVIISNCKIRTGESPLMLPLDIQRLKVERCHDIRSLCDVMSLKNATSLKRCEIADCDGPEYMFSLSCSSSCCTSLHSLESLELYSLKNLHGLCKEGEVAAQTFPPGRAFTCLKYFFIYRCPLIKKLLTPRLLAYLPNLEEITVHNCKSMEEIISVDGIDYESFGGKKSYVTNRDTIVVTHSKLVSLSLKHLPELKSISSAQMECESLKNFRIFKCPKLARFPETATPVQILYDSF*

CDS Sequence:
>Vu_24311.1

ATGGCCACTAGAATCGTAGAAGGCTTGGTGAAAACCAGTGAAATATATTCTCTAATCTTGGATATTCTCAGCAGATTCAACGGCTTCAATGACAATGTACAGATGCTCGAGATGAAACTAGAAGAGCTATGCTGCCTGGAACATGACATAAACAAAGAGCTAGAAACTGAAGAGCTAGAGCATGGAAAGAAAAGGAAACGAGAAGTTGAAAATTGGTTGAGAAATGTTAAAAGAAAGAAAACTGAAGTGCATGGCATGGTTCAGGAATTGAGAGATTGTGGAATGTTTAGGCATCTAAAGCTAATTGTACAAGTAAGGAAATTAACAGGACAAGTTACAGATCTCGTGGAGCGTGGTAGGTTCCCTGAAGGAATTGTGGGCAGTGCACAGGAATCAAGAGGATGTGCATTGTTGACAACAGAATTAGCAGGTGCAATGTTTCAGAAAAATGTTTGTAAGATATGGGACTGGTTGATGAACGATGGTGTGTTGATGATTGGTGTGTATGGCATGGGAGGAGTGGGAAAAACAAGTGTGCTAACGCACATACATAATATGCTTTTAACGGCAGTCACCAACTTTGAAAGTGTGTTTTGGGTGACTATCTCAAAGTCATTTAGCATTCATAAATTGCAGTGCGATGTGGCAAAAATAGTTGGGATAGATATTTCCAAAGAAAGTGATGAAAGGAAGAGAGCAGCAAGATTATCACGGGCCTTGGTGAGAAGGAAAAGATGTGTTCTTTTTCTAGATGATGTGTGGAACCATTTTCCTCTAGAGAGGGTGGGAATTCCTGTGCGAGCAGATGGGCTAAAACTGGTTTTGACAAGTCGTTCCTTAGATGTGTGTCGAAGGATGAATTGTAAAAACAGTGTCAAAGTGGAGCCTCTTTCGATGGAAGAAGCATGGACCTTATTTGTAGACAACCTTGGACAACAGACAACTCTTTCTCCAGAAGTAAAACAGGTTGCAAGATCTGTTGCAAAGAAATGTGCTGGTTTACCCCTTGCAATTATTACATTGGCTAGGAGCATGAGGGGAGTGGAAGAGATTTGTGAGTGGCGGCACGCACTGGAAGAACTAAGAAACACAGAAGCAAAGCACGAGGAAATGGAAATGGAGGTGCTCCGGGTGTTGAGATTTAGCTATGATCACTTGAATGATAAAATGGTACAGCAGTGCTTCTTATGCTGTGCATTGTATCCTGAAGATTTTGAAATAGACAGGGATGTTTTGATAGAGAGTTTTGTTGATGAGGGGCTGGTGAATGGAATGAAAAGTTTGGAGGCCATGTTTGATGAAGGGAACAGCATAGTGAATAAGCTTGAGAACATTTGTCTTCTGGGGAAAGTGGAAAATTTTGTTGGTGGAAAGAAATGCATGGGGCTACAGGATGCTAGCAGTCATATAGCTATTAGCATGATGAAAAGGGGATGCCAACATGTGGAACCAATGAACAATGTAGAAGGGTATTATGTGGGTAGTCAATTGGTGAAAATGCATGATTTGGTGAGGGCAATGGCTATTAATGTTATAAAGGTGAACAACAATTTCCTGGTGAAGGCTGGATTACAATTGACTAAGATTCCTGATGAAGTAGAATGGAGTGAGGACCTAGAGAAGGTTTCCTTGATGTGTAATTGGATACATGAAATTCCAACAGAGATATCACCTAGGTGTCCTAAACTTAGAACCTTGATTTTGAAGCACAATGAATCCTTGACAAGGATCTCTGATTCGTTTTTTGTTCACATGGCAGCTCTTGAAGTTCTTGATTTGTCTTTCACAGATATTGAGGTTTTGCCAAAATCTGTGTCTGACTTGAGTACCCTCACTGCTTTGTTACTAACATCTTGTAAGCGATTGAAGCACATGCCTTCACTGGCAAAGCTTCAGGCCTTACTAAGGTTGGACCTATCTTTTACTGCAATCACAGAAATGCCTCAAGGTTTGGAAATGTTAGTAAACCTAAAATGGCTTAATCTTTATGCAAAAGACTTGGTATCATCAGGAAAAGAAGTAGCAAAATTGACTAGTCTCCAATTTCTTATTCTCCACTGGTGGTCAAGAAAGATAAAAGTGAAAGTAGAGTATACATCATGCCTGAGAAAGTTGGAAACTTTTGCAGCTAACTTGTACAACATGCACCATTTCAATTCCTATGTGAAAACAATGAACATATATGGACCTAGAAGTTACCTTCTTCTGTTAGACACTGAAGAGTCTCTAGGTAACTCTCCGTGGTGTTGTTTTGCCGAGGTTTGCTTTAGGAAGGATGTGATAATTTCAAATTGCAAAATCAGAACAGGAGAATCACCCCTTATGCTCCCTTTGGACATTCAACGCTTGAAGGTTGAAAGATGTCATGACATTCGGAGCTTATGTGATGTTATGTCATTGAAAAATGCCACCTCTTTAAAGCGCTGTGAGATTGCAGACTGTGATGGACCAGAGTACATGTTTTCTTTATCTTGCTCTTCCTCATGTTGCACCTCTCTCCACAGCTTAGAATCATTGGAACTCTATAGCCTAAAAAATTTGCATGGTCTATGTAAGGAAGGTGAAGTTGCAGCTCAAACCTTTCCACCAGGAAGAGCTTTTACTTGTCTGAAGTACTTTTTCATCTACCGTTGTCCCCTTATCAAGAAGCTTCTCACACCTAGATTGCTAGCTTATCTACCGAACTTAGAAGAGATAACTGTTCATAACTGCAAATCAATGGAAGAAATAATCTCAGTTGATGGAATAGATTATGAAAGCTTTGGTGGTAAAAAATCTTATGTGACTAACAGAGATACTATTGTAGTCACACATTCAAAGTTAGTGTCATTATCATTGAAGCACCTACCAGAACTCAAAAGCATAAGTAGTGCACAAATGGAGTGCGAGTCTCTCAAAAACTTTAGAATCTTTAAATGTCCAAAACTTGCGAGGTTCCCAGAGACCGCCACCCCAGTTCAGATTTTGTACGATTCTTTCTAA

Promoter Sequence:
>Vu_24311::LG6:5777810-5779810(+)

ATCTATCTCAAATCTATTATAATATAATAATAAAATATTAGCAAATATATTTTAATATTTATTTTATCTTATTGATAAATATCCTAAAAATTAGTTTTTTAGTAAAATAATAAAATAAAATACTAACAAATTTATTTTAATATTCATTTTATTTGGTTGACAAATGTCTTAAAAATTAATTTATTTATTTATTTATTTTACATTTTTAATTTTATTTTATTCATTTTTATTTTTTTGTTATGTATGAAAGTTATTTAATTTTTTTATCTATTTATTTTATTTTTTAATTTTTTATATATATTTATTTTGCTGCACATGTGTCTAGAAGTTATTTTACTTTTTTATCTATTTATTTTATTTTTAAATTTTTTTATATTTATTTTGTTATTAGAATGTACATATAATTTATTTTACCTTTTTATCATTTATTTAATATATAATATAAAATAAATCATGAACTCTTTTATATAACATGTTTTTTATATTTTCTAAAATTCAAAATCCAACATCTATTGCAAATTTAAATTGTGACTTGAATATGCGAAATTCATCTCTAAGCTAATGTAGTCAATGGTCTAATTTTATAGAAGGTACTTTGATATGTTTATCCATTATTAGTATTTGATTAAACGAAGAATACAAACAGTTTTAGGCAAGACTAGTAGCACTCTCTCCCATGTCAGACAAAATTGATAGAATAACATATTAAATTACTTTCATCAAACCAGGGTCAAAACTTACGGCAAGACTCTGAACAAAATTTCATACATTTGACTCACTGCAGAAAGAATGAATCTTCCAGAATTACAAAACTTAAACAATATACTGAGAATAAACAACATCTTGGTCTAGTCAATGGTGACTAGTGTTTACGCGTGATTTTGATTCAGTTATATCAGTGAAAATAAAAATGAAAAAGATGAATAATATATAAAAAGAATCACCAATTCATTACTTTTTAAATTTTTGACGGACTGTGTTAATCGTCTGTATAGATTTGATTCATGTCGTATAGATTAGGAATCACCCTGGAATATAATTTTCTTTTATTATTTTATTAATTTAGTTTTGAACAACTCTAATGGTGATTATTACCAGCACTTGTTTTTTCTACGTGCTGTCTTTTCAAAGACAATACCATGCAGTCACGGCAAAGACTTTGGAACACCAGTGGTGTGGCATAATTTTTCTTCTTCTGTTTCTTGGCAAAAACTGAATTCTACCATTCTTGCATGCTCATATTTTTTCCATGATTCTTACGCCATGTTTGGTTGGTCGTGTTGGTTCAGATGCACATATTTCATTGTGTTATCATTCGTTCGCAGAATAAGGATCCCTGGATCAAAAAGCTCTTTGTGTGTTACCTGAACTATGTATTCTTTCTAAGAATTCAAATCTTGTTGTATTCAGGTAAAAATCAGCTTCTTAGTTCCACTGTTTATCACTTTTTTGTTTAATTATTTTAATTCCTGGCCCTTAATTGAGTAAATTCAGTTTCTTTTTTCTTGCTGGATGCACACCAGTAAAAGTTGCTTGTTTTCTTTTGCAACTGTATTTTGTTGGCATGATGGTTATTCGAATGTTTTGCCTTGAAATATGATAGCATGCTTTTTTGGTTCTCCATAATTCAGTTTTGTCAAGAGATCATACCCTTATATGATGTTACATGAATAATCTTATACCAGACATAGTTCCTTTCAAGAGAAATTAGCAGAAACAAGGAACATGAACTTGTTAATTAATAAATTCAACGAGTTTCCTTAAATCTGGAAGATAAATGGTATTCTACAAGCGCACTCGGCAGACTTCAGAATTCAACCATTACAATTTATAAACATTGTTTTTGCATAGCAGTAGTTGGTTTCCTGAATGAATAGCCTTCGAATTAGAACATTTTTATTATCTTTTTCTTATTTTCCTTTTACAACTTTCTATGGCTACCAACTGCTTGATTTTTTTCCCCTTCCTTTTCTGTTTCTGTTTGCGGCAGGAGCATGTTA

Gene Sequence:

>Vu_24311(+)