Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_24063	LG5	70792768	70794336	PREDICTED: transcription factor TCP8-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	70792828	synonymous_variant	p.Gln503Gln
C/A	70792981	synonymous_variant	p.Pro452Pro
C/T	70793133	missense_variant	p.Gly402Ser
A/G	70793458	synonymous_variant	p.Gly293Gly
A/T	70793503	synonymous_variant	p.Leu278Leu
G/A	70793599	synonymous_variant	p.Tyr246Tyr
G/A	70793665	synonymous_variant	p.Ser224Ser
G/T	70793950	synonymous_variant	p.Thr129Thr
A/G	70794106	synonymous_variant	p.Pro77Pro
A/G	70794205	synonymous_variant	p.Gly44Gly

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_24063.1

MELSDLQNNKQNITNTNNTNTKTNTGPPPGAAAAAAAAAGGGGGGSGGGVSGATHPRPHPHHHHQQSSSSHVVRPNPPSPFISSSTTSSSSNSSSSSSSASASSHIIDASLAIATRSDDSANKTQPLSTAVAEPSPAANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSFRSSGSTLSAPPSKSAPHTFHGALALAHHPYDEAFQHTALLGFHPHAHAHQQHQQHQQHQQQLLSADQIAEALPSGGGDSGDSYLRKRYREDLFKDDNINSQSQNESGDGSSPKTPNLQLPKQQPQQQNEAGSGLLRPTNLLPATAMWAVAPAPASGPPGSTIWMLPVTAASSGSAAAAASASSSGGGGSSASSESQMWPFPQSGFMPRFNLPSALEFQGARAGSLQLGSMLMPQQPSQHLGLAMSDSNFGMLAALNAYSRPGFNINSDNHHPHHHHHHHHHHPLEHQHQHQHQPSESGEDAPNSSQ*

CDS Sequence:
>Vu_24063.1

ATGGAACTATCAGATTTGCAAAACAACAAGCAAAACATCACCAACACAAACAACACCAACACAAAAACAAACACAGGACCACCACCAGGAGCAGCTGCAGCTGCTGCAGCTGCTGCTGGCGGTGGCGGCGGTGGTAGTGGTGGTGGTGTTAGTGGTGCTACTCATCCTCGTCCACACCCCCACCATCATCACCAACAATCCTCTTCTTCCCATGTTGTCAGGCCAAACCCTCCATCTCCTTTCATCTCTTCCTCCACCACTTCTTCTTCTTCTAATTCTTCCTCCTCTTCCTCTTCTGCGTCAGCTTCTTCCCACATCATCGATGCCTCCTTGGCCATCGCCACCAGATCTGATGATTCCGCCAACAAGACCCAACCGCTCTCCACCGCCGTCGCCGAGCCCTCCCCCGCCGCCAACCCTCCCAAGCGATCCACCAAGGACAGGCATACCAAGGTAGACGGCCGCGGCCGCAGAATTCGAATGCCCGCCACCTGCGCTGCTAGGGTTTTCCAATTGACTAGAGAATTGGGCCACAAGTCCGACGGAGAGACCATCGAGTGGCTCCTCCAGCAGGCCGAGCCCGCCATCATCGCCGCCACCGGGACCGGCACCATCCCCGCTAATTTCTCCACCCTCAACGTCTCCTTCCGCAGCAGCGGCTCCACGTTGTCCGCACCGCCGTCCAAGTCGGCCCCGCACACCTTTCACGGCGCGCTCGCACTCGCTCACCACCCTTACGATGAAGCCTTTCAGCACACCGCTTTACTTGGCTTCCACCCTCACGCTCACGCTCACCAGCAGCACCAACAGCACCAGCAGCACCAGCAGCAACTTCTTTCCGCCGATCAAATCGCGGAAGCGCTTCCCAGCGGCGGCGGTGACTCCGGCGATAGCTATCTCAGGAAACGCTACCGAGAAGATCTGTTCAAAGACGATAACATTAACTCCCAATCACAGAACGAGAGCGGTGACGGTTCTTCGCCTAAAACTCCGAACCTACAGCTACCGAAGCAGCAGCCCCAGCAGCAAAACGAAGCTGGTTCTGGGCTTCTCAGGCCCACGAATTTGCTACCCGCCACAGCGATGTGGGCCGTGGCACCCGCTCCAGCGAGTGGACCTCCGGGCAGCACAATTTGGATGCTTCCGGTAACCGCGGCTTCTTCCGGTTCTGCTGCAGCTGCCGCTTCAGCCTCTTCTTCTGGCGGTGGTGGATCCTCTGCGAGTTCGGAGAGTCAGATGTGGCCTTTTCCTCAGAGTGGTTTCATGCCAAGGTTCAATCTTCCGAGTGCGCTTGAATTCCAAGGCGCACGTGCGGGTTCTCTGCAATTAGGGTCAATGTTAATGCCGCAGCAACCGTCTCAACATCTGGGTCTCGCCATGTCCGACTCCAACTTCGGCATGTTAGCTGCCCTTAATGCTTACTCAAGACCTGGTTTCAATATTAATTCCGACAATCATCATCCTCATCACCATCACCATCATCACCATCATCATCCCTTGGAGCATCAGCATCAACATCAACATCAACCCAGTGAGAGTGGAGAAGATGCTCCTAACAGCTCCCAATGA

Promoter Sequence:
>Vu_24063::LG5:70794336-70796336(-)

ATACTGTCATGAGAGGTTAGAGATAAAGACGAAGGTTTGGTTAGTACATTTAATTACGTGTTATCATTATCTGTACAATCTGAAACACTATAATAAGCCAAAGGGGGGTCCAGATTGGATTGTAATTTTCTTTTGTTTTTTTAAGCTCTGACTGATTGGTGTTTTCATTATTTTTAGTTCAAGATTTCTGAATTTTGATTCCAGAATAATATAGCTGCTGGAAATATATAAAAAGTAAAACTGATAGAGACACGCATCAAGTACTGTTTCCAAGTTTGGTCACCAAAGTTGTGACAGGACAAATTTGTACACTTCATAAAAATACAACTCAAAGGGTTGCAGAATACACAAACTTTTCATCTAATTTTTTAAATCAGAATGGTACAGCTTGTTTCTCCAGCTGGAGAACATTATAGAAAGTTTTGAATGCAACCAATGGAAAAACAATTAGGAAAAACTGTATTTTTACTTAGTCAAAAAAGTGTTTTTTTTTTCACTGCTTTACTTTTTCTCTCCGTTCATGGAATATTTACACAGAAGGGTTGACATGTATGTAAAAATTGAAATTACCTGTGTATAATAATATCAGGGTTATGCAATGTATAAGTATATGGAAAGTTCAAACATTTGAAATGATTGCGTAACGGTTCTTTCATTCTGCTTTGAACTTTTTGGATTAAGGTGAAAATGTGGTAAGTTTGGTTTACTGTATTTATGAAAGGATCAAAACCAATTGCACCCTATATTTATGTTAATGTTCCATTATCAGTTTTTTCTTCTTTCTTTTAAACTATTGTGTAAAGTTTCTGAACATGTTAATGGTTTTGACACGATATACTAACTTACATGATTATATTTAGTGAAAGAAAAACAGTGGTGTAAAAGATAATCACAGAAATAAGAGTGGTGAATCCTGATTTCAATCATTCGACCCTTTTGAGCTGAAATGGTTTTGTTTCCTTTGAGATTATTGAGTCTATATATAGTAGGCTAAGGCATTTTAGTGATAAAGGTTCTACTTTTAGTCACTGAATGTGACATGTGTGTAAGATGAACTTTAATTCAGATGGGATTCAAAGAATATAAAGCTTCCAATGTGGTTGTTTGAGAAGAGATTGGATGTGGATGATTCCACAGTGCATTAGCCTAATTTAGATTAAGAAACTGATGAATGTTGTTTTTGTTTGAACGGTGTTGCATGGAATTTGAGGAGAGTGATGATGGCATGAAAAGGGAGAGGGGCAATTGTGTCTTTGTGAATGATCCCACTAGTGAAAAAGTGGAGTGCTCAACCAAATTTGACCATGGGAGAGAAAAGGAATTGAAATATAGAAAAAGCATAAAAAAGAAAGAAAGAAAGACACAGAATGTGCATTAGATGCCTTTATCTGATGCTCATGTCTTCATCTCTCTGTATTCATTCTATTGTATTCTACACATTAACAGTATACATTATACAGTATAATACAGTATAATACAGTATATATGGCATTAACGATGTCACCCACCCACTTCATCATCAACCCCAGAACTCCTACTTACCTTTTTATCTTTTACTTAGAGATTTAACATATCTCTGAAGCTGAAAACATATTTGGAGTTTGTTGGGTGAATGAAAGAAAGAGAAAGATGGAATTTTGAAGGGGAAAATTGAGAATTCCTTTTACGAGACCCCACGAGTGGCTTTGTGTTTGGTGTTATGGTCTGAGCAGAGAGGAAGACAATAGTCAATCAAAAGGGAAGAACCCCACAAAGTGAGGTCCAAAGACTCAAAATTTAAAAACTCTTTCTCTTTCTTTCTTTCTTTCTCTCTCTTTGTCTCTCTTCTTTCTCTTTCTGTCTAAAAGGGAAATAGAGAATGGGGACGAGGGAGATAGAGTCGGAAGAATGGGGGTCATGATTCATCATCCAAACCCATTTCATTCCATTGCCTTCAAAGAAAAATTAAAAACAAAAAAATAAAAAAGACAAGTAAATCTGATCAGAGCCTCCCCCACCAA

Gene Sequence:

>Vu_24063(-)