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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24042 LG5 70646453 70649253 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 70646495 5_prime_UTR_variant
T/G 70646498 5_prime_UTR_variant
C/A 70646856 missense_variant p.Ser109Tyr
G/A 70647317 missense_variant p.Asp263Asn
A/C 70647318 missense_variant p.Asp263Ala
A/T 70647591 missense_variant p.Glu354Val
G/T 70647595 synonymous_variant p.Val355Val
G/A 70647703 synonymous_variant p.Val391Val
T/A 70647876 missense_variant p.Ile449Asn
G/A 70647881 missense_variant p.Ala451Thr
T/A 70647925 synonymous_variant p.Ala465Ala
T/A 70648459 synonymous_variant p.Gly643Gly
C/G 70648576 upstream_gene_variant
A/G 70649041 missense_variant p.Asn650Asp
G/A 70649121 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24042.1
MKMLLLPLMFAVFSSMSLSLAAPSPSPTSTCPMDLNYVLRIPWNNSVCHNFQRNLATRNGTDANTCCISLLSLFGVGLAQHLKETSQFQLPNLATSVSCIQDFQSKISSLSLPDNLVDSCFDPLQFVISPNICAGIQTISDWTKKLGQSTALNTACKPDLTDLPLCDLCVGAGLQVKQELISIDGNTSHSMDCFYFTILYAAGIVNEFGPESNGAVTCIFSMPVYSRGGSGGKSHQALVFGLTGAGVALLVMSSLLGLYVWCDRKHRRKKLETFQFDFDPEEQGSRRRLRPNTGSIWFKIGELEKATDNFSSKNFIGRGGFGLVYKGTLPDGTVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVAEESENYDERGSQRYLVYDYMPNGNLEDHLFVSSDSPKAKGSLTWPERKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKAGKLEEALDSSLVKDENFPSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPAFYNDASTFSISPALSGLKLQTGDMLRSINEG*


CDS Sequence:
>Vu_24042.1
ATGAAGATGTTGTTGCTACCCTTGATGTTTGCAGTGTTTTCTTCCATGAGTTTGAGTTTGGCAGCGCCTTCTCCATCCCCGACATCGACATGCCCCATGGACTTGAATTATGTTCTGAGAATCCCATGGAACAATTCTGTTTGCCACAACTTCCAACGGAATTTGGCAACAAGAAATGGAACAGATGCAAACACTTGTTGCATATCACTGTTGTCCCTCTTTGGCGTAGGACTTGCGCAGCATCTCAAAGAGACTTCTCAGTTCCAACTCCCCAACCTTGCCACCTCAGTTTCATGCATCCAAGACTTCCAATCGAAGATCTCTTCCCTCTCTCTCCCCGACAACCTTGTAGACTCCTGCTTTGACCCTCTTCAGTTTGTGATCTCTCCCAACATCTGTGCTGGGATTCAGACAATCTCTGATTGGACCAAAAAGCTTGGTCAGTCCACAGCACTCAACACTGCTTGCAAACCGGATCTCACCGATCTCCCCCTCTGTGATTTGTGTGTGGGAGCTGGGTTACAGGTCAAGCAGGAGCTTATTTCCATAGATGGTAACACTTCTCACTCCATGGATTGTTTTTACTTTACAATACTCTATGCTGCTGGGATTGTGAACGAGTTTGGACCGGAAAGCAATGGTGCCGTGACTTGTATTTTTAGCATGCCTGTTTATTCAAGGGGGGGTTCTGGGGGAAAGAGTCACCAGGCTCTTGTTTTTGGGTTGACGGGAGCTGGGGTGGCTTTGCTGGTGATGTCTTCTCTGTTGGGGCTTTATGTGTGGTGCGACAGGAAGCACAGGAGGAAAAAGCTTGAGACTTTTCAGTTTGATTTTGACCCTGAGGAACAAGGGTCTAGGCGTAGATTGAGGCCTAATACGGGGTCCATTTGGTTCAAAATTGGGGAGCTTGAGAAAGCCACTGATAATTTTTCATCGAAGAACTTCATTGGCCGTGGTGGGTTTGGGTTGGTTTACAAGGGAACCTTGCCTGATGGGACTGTGGTGGCGGTTAAAAGGATCTTGGAATCTGATTTTCAAGGAGATGTGGAGTTCTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCATCGCAATCTGGTGCCTCTGAGAGGCTGTTGTGTGGCTGAGGAGAGTGAGAATTATGATGAAAGGGGAAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGAAACCTGGAGGACCATCTGTTTGTGTCATCAGACTCTCCGAAAGCAAAGGGATCATTGACATGGCCTGAGAGGAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCCTATCTGCACTATGGAGTTAAACCTGCAATTTTCCACAGGGATATCAAAGCCACCAATATTCTACTTGATGCGGATATGAGGGCAAGAGTCGCTGATTTTGGTCTTGCCAAACAAAGCCGAGAGGGTCAGTCTCATCTGACAACCAGAGTGGCTGGAACTCATGGATATCTAGCTCCAGAATATGCACTCTATGGTCAGCTCACTGAGAAGAGTGATGTGTATAGTTTTGGTGTAGTTGTTCTGGAGATTATGTGTGGGAGAAAGGCTCTTGACTTGTCATCATCAGGATCACCAAGGGCATTCTTGATCACAGATTGGGCCTGGTCACTGGTAAAGGCTGGGAAGTTAGAAGAGGCTCTAGATAGTTCCCTGGTGAAGGATGAGAACTTTCCTAGCTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGGATTCTATGCTCCCATGTCATGGTTGCTTTGAGACCAACAATTTCTGATGCTTTGAAGATGTTGGAAGGTGACATTGAGGTTCCACAAATCCCAGATCGCCCTATGCCTCTTGGCCACCCTGCCTTTTACAATGATGCCAGTACTTTTAGCATATCTCCAGCATTAAGTGGCCTCAAGTTGCAAACTGGTGACATGCTCAGGTCCATTAACGAGGGCTAA


Promoter Sequence:
>Vu_24042::LG5:70644453-70646453(+)
CAGTAATCTTTCATATTTCAAGTCACATCAAAGTGGCATTTTAAATTTATTTTAATGCAATATCAAACTATATTTACATTAGCAATTTTGTTAGTTTATTATTTCGGTGTGATGTTTTGGATCACAGTAAAACACTCATCTCTTTTATTATTTAATGTTATTTGGAGTGTTTTTAGTTAGATCTTTCTATATTCTTAATATATGAATTTTAAATCGTGTGACACCAGCTGTAAAAAATATTCTGACATTCAGATAAGTAATTTAATTTAGTTAATTAGATATTATAATAAAATTTTAAATTCAAAATAAGCGATTAGTAAAAAAGCGAGCGATTCAGATTGAAAATGAACAATTTATATTATTCAGACAAGCGGTTCAGACATTTCAGGCATTTAGAAATAAGAAAGACACGTGAAAAAAGTTAATCTCTCAGTCCTACACAAATTCCTACTGAAACACTTAATAAATAAAAATTATGCTAAAAATTACTTAATTAAGGTTTTAGATTCGATTTATTTTCTGACCAACCAATTTCTTAAGCTTTGTTCACTTGAATAGATTTGTGAAGATAGTGATTGAGGGGATTTGAGAGGATTTGAAAGTAAATTTTGTTGTTGTTTATTTGAGTGAATTTGAAAGTAAGTGAGAGTGGATTTAAAAGTAAAATTGATGAGAATTAGTGTAGAATTTGATTGATGTGACAAATTAAAAAATTTACTTATAAATTCACTCTCACTTATTTTCAAATTCATTCAAATAAATAATAAAAATTATCTCAAATTCACTTGAATCACTTCAAGTGAACAAAACTTTAATGATAATTAGATTTCCATAATATTTGTTTGAAGTACTGTTCACAAGAGAGGTATTCCAAAATATCATTCTCACTTTTGAGATAAAGTGAGTGGTCATAATTTTCTTGTAACATGATTCCTTTCAAACACACTACATTGGAATAAGTTGAAAAAACAAAGACAGTGGCATTGTCGAGAACACATAGGAAAGGTCAAAGAACATGTGTTTTACTGAAAGAAACGAAAAACACAGCAGCTTCATTGAAATCTGACCAATGGTTGGTTCATGTCGGCAAACAATAGAAAGACGAGTACAATTCTTCCACCATTGACAATTCTATCCTTCCATAATCACACTCTCCTTCTCACTCATCCATTGACTCCAAGGAACATGCTCACCCCACTCATTCAATCATTACTTTTCATCCTCTTTTTTCTAATAAATAATTATTAAGTTAAATAGTTAATACTTTAAATGATGTTTTAAATTTATGTTTGAGTTATTATATCATATTATTTAACACGTTTTAATTTAGAAATTAGTCTACTATCATCTACCACGTAAAAATAATTTAATGTTCAATGATTTATTTATTTATTTTAAAATATAAATATAAAAAATATTAAAATTTACAGCAGACAAAAAAATTGAATTTTATATCTAAAAAATTTAAGAACTACGACCAGCGTACTAGAGTAGTATTTTAGTATGTTATTCGTATTCTTGTATACAATTTTTCTTGGTCTGCATGTGTATGATTAATGTTGGTAAGTATATTGGAAATCCACGTAGATGCTCTATGCAAAGCAAAGTGGCAAAGTCAGAACACCTTACTTCATTAGTTGCTTTTAAGCAAGTAGAAACAAATGCAGCCGCTCCTCCCACCGCCATTCCAAGCGCGTGCATTTCCACTCTTCCATTCTTTAATTCGATCAACTTTTTCTTGTTATTGCTTCGGACTCATCCACGCGTGGCGCACACTCTCCTTTCTAGAAGGGTGAGCAGCAGATGCACCTAACGCAGCCACAGGCAAAGACAAGAGATTTAGAGTTTTGACCAGCTTCATATGATGATCATCGTTGTTCATGCATCTCCCTTAACCCCAATTTCACAAAATCGGCTCTTTTTGTCTCGATCATCTCACCCCACCAAACAAATCCAGTCACATATTCATATATAGAAACAAAATAACATCAAGTTCCGTG


Gene Sequence:
>Vu_24042(+)
GTAGCATAGCATATTGTGTTGTGTTGTGTGTGTTGTTTACTGTAATCAATCAACACAACACTGCACAAACATCATAGGATGAAGATGTTGTTGCTACCCTTGATGTTTGCAGTGTTTTCTTCCATGAGTTTGAGTTTGGCAGCGCCTTCTCCATCCCCGACATCGACATGCCCCATGGACTTGAATTATGTTCTGAGAATCCCATGGAACAATTCTGTTTGCCACAACTTCCAACGGAATTTGGCAACAAGAAATGGAACAGATGCAAACACTTGTTGCATATCACTGTTGTCCCTCTTTGGCGTAGGACTTGCGCAGCATCTCAAAGAGACTTCTCAGTTCCAACTCCCCAACCTTGCCACCTCAGTTTCATGCATCCAAGACTTCCAATCGAAGATCTCTTCCCTCTCTCTCCCCGACAACCTTGTAGACTCCTGCTTTGACCCTCTTCAGTTTGTGATCTCTCCCAACATCTGTGCTGGGATTCAGACAATCTCTGATTGGACCAAAAAGCTTGGTCAGTCCACAGCACTCAACACTGCTTGCAAACCGGATCTCACCGATCTCCCCCTCTGTGATTTGTGTGTGGGAGCTGGGTTACAGGTCAAGCAGGAGCTTATTTCCATAGATGGTAACACTTCTCACTCCATGGATTGTTTTTACTTTACAATACTCTATGCTGCTGGGATTGTGAACGAGTTTGGACCGGAAAGCAATGGTGCCGTGACTTGTATTTTTAGCATGCCTGTTTATTCAAGGGGGGGTTCTGGGGGAAAGAGTCACCAGGCTCTTGTTTTTGGGTTGACGGGAGCTGGGGTGGCTTTGCTGGTGATGTCTTCTCTGTTGGGGCTTTATGTGTGGTGCGACAGGAAGCACAGGAGGAAAAAGCTTGAGACTTTTCAGTTTGATTTTGACCCTGAGGAACAAGGGTCTAGGCGTAGATTGAGGCCTAATACGGGGTCCATTTGGTTCAAAATTGGGGAGCTTGAGAAAGCCACTGATAATTTTTCATCGAAGAACTTCATTGGCCGTGGTGGGTTTGGGTTGGTTTACAAGGGAACCTTGCCTGATGGGACTGTGGTGGCGGTTAAAAGGATCTTGGAATCTGATTTTCAAGGAGATGTGGAGTTCTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCATCGCAATCTGGTGCCTCTGAGAGGCTGTTGTGTGGCTGAGGAGAGTGAGAATTATGATGAAAGGGGAAGCCAAAGGTATCTTGTGTATGATTACATGCCAAATGGAAACCTGGAGGACCATCTGTTTGTGTCATCAGACTCTCCGAAAGCAAAGGGATCATTGACATGGCCTGAGAGGAAAAGCATAATCTTGGATGTGGCAAAGGGGTTGGCCTATCTGCACTATGGAGTTAAACCTGCAATTTTCCACAGGGATATCAAAGCCACCAATATTCTACTTGATGCGGATATGAGGGCAAGAGTCGCTGATTTTGGTCTTGCCAAACAAAGCCGAGAGGGTCAGTCTCATCTGACAACCAGAGTGGCTGGAACTCATGGATATCTAGCTCCAGAATATGCACTCTATGGTCAGCTCACTGAGAAGAGTGATGTGTATAGTTTTGGTGTAGTTGTTCTGGAGATTATGTGTGGGAGAAAGGCTCTTGACTTGTCATCATCAGGATCACCAAGGGCATTCTTGATCACAGATTGGGCCTGGTCACTGGTAAAGGCTGGGAAGTTAGAAGAGGCTCTAGATAGTTCCCTGGTGAAGGATGAGAACTTTCCTAGCTCAAATCCTAAGAGCATAATGGAGAGGTTTTTGCTGGTGGGGATTCTATGCTCCCATGTCATGGTTGCTTTGAGACCAACAATTTCTGATGCTTTGAAGATGTTGGAAGGTGACATTGAGGTTCCACAAATCCCAGATCGCCCTATGCCTCTTGGCCACCCTGCCTTTTACAATGATGCCAGTACTTTTAGCATATCTCCAGCATTAAGTGGCCTCAAGTTGCAAACTGGTGACATGCTCAGGTAATCAAGATGTTCCTTTATATTGCTTAAAATGTAGAAAGAAAAAAGTGGAAGCTGCTTCCATTCTAAGGCGTGCCAAAGGGTCCAGTCAAATCATGTTTGGAACATCACATAATAAACTGATGAGTGTCATCAAGGTACAAATAACACTGCTCTTGAGAAAACTGATGAGTGCCTCGACAAATTCTATGCCAACTATGCAGAAACTTAGCAGTTAGCAGATCATCGTTATATCAGCTACCAAGGAAGCTAAGGCTTATTTAAATAGCAGAGAATTGGTGTATTGTAGGAACTTAGAACATATGAAAAATGTCTTGTAAAATGAAGTCTGCATTTTTCTCTTCTCAATTTTCTTGTGCAACAAAAGTCACAAATGAAAACTCTTGTATATAAAGAAAAATGTTAAGTTGGCAGGATCATAGTTGGTTCTTACAAGATAAAGTGATGTTGGATTGTTTTCTCAATTTCTGTGTTCCTCGGCCAAGTCTCTCTGAGTTAATTTTTCTATGCTACCTTATCTTAGATTTATGTACATAATTATCATTTTCCTCTGTTTAAAACAGGTCCATTAACGAGGGCTAAGTTCTTCAAAAGGATTTGCAAGTCCAGAATCTAGCATTTTTTTTTTCATATGCAGGCTATTAGACAGAGCAAGAGCATTTTATTTTTGCTCTTCTTCCCCTGTAAAAACAGATTTTGTATATGAACACTTTGGATAACTCTGCAGATCTTGGAAAAATTCTGTACAAAATATATACAAGGTTTTGAATTTTTTTTATGCTC

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