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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23963 LG5 70012103 70013382 PREDICTED: probable inactive receptor kinase At2g26730
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 70012168 stop_gained p.Trp374*
A/G 70012624 missense_variant p.Ile222Thr
T/C 70012812 upstream_gene_variant
A/T 70012825 upstream_gene_variant
A/G 70012840 upstream_gene_variant
T/A 70012846 upstream_gene_variant
A/T 70013022 missense_variant p.Leu121Met
T/A 70013335 synonymous_variant p.Ile16Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23963.1
MNISFIINVVLLLAIILLLLLYYNTYTRLNKIVKGQIHTVIEKEDDVEIGVEKKIEIGEGTVIMTVEERKGLIFFNDSQKFQMGELLRASAEPLGHGILGNSYKAMLNSGSTIVVKRLRDLKPFTKEEFEKIVNAIADMKHPNLLPLLAYYHSRDEKLMLYSFAGNGNLFSRLHDRGGNRAPFGWNSRLSVARGVARALVYLHLNHKFQNVVPHGNLRSSNVLFDENDAVLVSDFGLASLIAQPIAAQHMVVYKSPEYGYARKVTMQADVWSYGSLLIELLTGKVSINSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISGQKSALPGMLRLLQLAMRCIERFPEKRPEMREVMREVEKIQVPVITEDDDDVSGDRSLTDDSLSTSTSIIGDER*


CDS Sequence:
>Vu_23963.1
ATGAATATTTCATTCATTATCAATGTGGTTCTTCTGCTTGCAATCATACTGCTCTTGCTGCTTTACTACAACACATACACAAGGCTGAATAAAATAGTGAAGGGGCAGATTCACACAGTCATAGAAAAAGAGGATGACGTGGAGATCGGTGTTGAAAAGAAGATAGAGATAGGAGAGGGGACAGTGATTATGACAGTGGAAGAGAGAAAGGGGCTGATATTCTTTAACGATAGCCAGAAATTTCAAATGGGTGAACTTCTTAGAGCTTCTGCTGAGCCACTGGGTCATGGGATCTTGGGAAACAGTTATAAGGCTATGCTGAATAGTGGATCTACCATTGTCGTCAAAAGGCTAAGGGACTTGAAGCCATTTACAAAGGAGGAATTTGAGAAGATAGTGAATGCGATTGCTGATATGAAGCACCCCAATTTGTTGCCTTTGCTCGCTTACTACCATTCCAGAGATGAGAAGCTCATGCTTTACAGTTTTGCAGGGAATGGAAATCTTTTCTCCCGACTTCATGATAGAGGCGGAAACCGGGCACCGTTCGGTTGGAACTCAAGATTGTCAGTTGCAAGAGGAGTGGCTCGAGCATTGGTGTACCTGCACCTCAACCACAAGTTCCAAAACGTTGTCCCACACGGCAACTTGCGGTCTTCAAACGTATTATTCGATGAAAACGATGCGGTTCTTGTTTCTGACTTCGGTCTTGCCTCCTTGATAGCACAACCTATTGCAGCTCAGCACATGGTTGTTTACAAATCACCTGAATATGGGTACGCAAGAAAGGTGACAATGCAAGCCGATGTGTGGAGCTATGGTTCACTTCTGATAGAGCTTCTGACCGGAAAAGTGTCTATTAACTCGGCTCCACAAGGAACGAATGGCGTGGATCTATGCAGTTGGGTTCATAGAGCAGTGAGGGAAGAATGGACAGCTGAGATATTTGACAAAGAAATATCAGGGCAAAAGAGTGCACTTCCTGGGATGCTGAGGTTGTTGCAGCTTGCAATGCGTTGCATTGAGAGGTTCCCTGAGAAGCGCCCTGAGATGAGAGAGGTGATGAGAGAAGTGGAGAAAATACAGGTCCCGGTGATCACAGAAGATGATGACGATGTGTCTGGGGATAGGTCCCTAACTGATGATTCTCTTTCAACCAGTACCTCTATCATTGGAGATGAAAGATAG


Promoter Sequence:
>Vu_23963::LG5:70013382-70015382(-)
ATTCTTTTTCATATTTAAGTTTTTTGGATAGAAAACACGGATTAAAAGAAAATTTTATTAAAAGTCATCACAAAAATGTATTCAAATCAATACAAATTTCTCTTAAATTTTATTTTTATGTTTTAAAGAAGTTAACTTTTTTGTTATTTTATTCTCGAAATTACGTTGAAGAAGCAGCAGGAAAAGGAAAATTTATAAGAAAATGAAATTGGTATTCTTATATAAAAGCAGTTGATACATAAGTTAAATTATAAAAATCCTCTCTTATAATTTATAAAGTATATTTTTAATTTATTTATAAATTAATTTTAACTACTAAAAAAGATTATTTCATTTGAGAAGTGGTTGGTCCAGCCAAGGTATTTCTCCCCAATGGACAGTGGAAGAAACCAAACCATAGTTTTCAGAAATTAATTAATTAAAAGGGACAAATCGTGAATGGATGAGCCATTTTTTATTTGATCTAATCTTTTTCAATATTTTTAATTAATAATAGGGTGATGTTTACGGGACAACTACTTCAAAAAATTCTAAACAAAAATAAAAATAATAACTATTTAATGATGTTTCACTCACTTTTTTCTTTGAAACAATACTTATATATAATAATTTATATGATATTTATTCTATTTAGCTTTTTTCTTTCTCATCTTCTCTCCTTAATTAGAGTCGACACTTGGCAAGCTGATGATAATGATTTCATTTACTGTTAAGATTTTCTAAAATTTACACATTAGGCGTCATAAATGTTTACTTTAAAAGTTAAAATTTAAATTAGATATTATTTATTTTAAATATATAAATAAAATTTATAATATTATTTTGGTTGGATTTTTTAGTATATATTTCTGATCCATGTGTTAAATTTAAAAGAACAAAAAAGTTTTGAATATGGATCACAAGATCATCCAAATAAAAAACTTGTAATACAATTCAACAAGACTTTTTGAAAAAAAAAAGAAAAAAAGTTTCTTCATAAATTAAAAATAACTTATATATAACTAATTTATACATATAATTATTTCTAATTTTACTTTTAAGTTTTCCATATTTTAATTTTAACTCATACGGAAGTTTATTTAATTTTTTCTTCTTTAATTTTTCAAGATTTTTTATAAAAAAGTCCGTACTAAAATATGGTACAACTTCTTAACCAAAGCATTTGTCTTAGTACTAATAATTATATTACTATTTAAATATTTTATCCGTTTGTCATAGAAATATTACAGTTTTCATTTAAAAATAAATAAATTGATTCGTATTTTAAAAGTAAATTTTAAATTTAACTCATTTGTATCGAATCGAATTGTAAAATAAGATGATTAAAACAATAATCCCAACAAATTATAAAATAGATGATTAGAACAATAATTTCAACAAATAACAAAATAGACGAGTTAAATAGATTTATAAAGTAATTTTTTTATTTATTAAATTAATTTTATTTATAGTAACGTAGACTTTTAATTTTTCTTTTTAATATAATATTATCTTAATTTATATATTTACTAATAATTCATTTAAATAATTTTATTTCTAAAATTTAGACAATTATCCATGCCTACTTAGAAAAAAGTTTAATTTTTGTGTTACTTTTGTTCAATTCATAAACTAAACTGGCAACAGCGTCCAATCTTGCATTAATTTTCTTCGAGGAGGACAATAATGGCCGTCCTGAGATTGAGAGTTACAAGAAGAAGGAGCTTTTCATTAAGGCCATTCTCACATGCAACATTCCAATTTACTTGACAGCTCCAAGGTTACAAACTTCATTCCTACACTGCCTGATAACATCGATATACAAGAATTTTAGTATTCTCAGGAGAATATCATGTAGATACCCTTGTTATTGTCTGAACTGCAACTAGGTTGTTTATGTCCTTAACTTTAACGCTTCCTACTTCCATTCATTGGAGACATGGTTTCATCTACCAGTTCACCCCATTTTCACCCGTAAAACCTTCATACCAACAACCTTCACATCTCGTAAACCTTCATTA


Gene Sequence:
>Vu_23963(-)
ATGAATATTTCATTCATTATCAATGTGGTTCTTCTGCTTGCAATCATACTGCTCTTGCTGCTTTACTACAACACATACACAAGGCTGAATAAAATAGTGAAGGGGCAGATTCACACAGTCATAGAAAAAGAGGATGACGTGGAGATCGGTGTTGAAAAGAAGATAGAGATAGGAGAGGGGACAGTGATTATGACAGTGGAAGAGAGAAAGGGGCTGATATTCTTTAACGATAGCCAGAAATTTCAAATGGGTGAACTTCTTAGAGCTTCTGCTGAGCCACTGGGTCATGGGATCTTGGGAAACAGTTATAAGGCTATGCTGAATAGTGGATCTACCATTGTCGTCAAAAGGCTAAGGGACTTGAAGCCATTTACAAAGGAGGAATTTGAGAAGATAGTGAATGCGATTGCTGATATGAAGCACCCCAATTTGTTGCCTTTGCTCGCTTACTACCATTCCAGAGATGAGAAGCTCATGCTTTACAGTTTTGCAGGGAATGGAAATCTTTTCTCCCGACTTCATGGTGATTTACATCAACTTGCTCCATTTTTTTAGTTTGATATCGTGTACATTAGTCATGTTTATGTGTATGTTTATGTGCCGATGACATTTCAGATAGAGGCGGAAACCGGGCACCGTTCGGTTGGAACTCAAGATTGTCAGTTGCAAGAGGAGTGGCTCGAGCATTGGTGTACCTGCACCTCAACCACAAGTTCCAAAACGTTGTCCCACACGGCAACTTGCGGTCTTCAAACGTATTATTCGATGAAAACGATGCGGTTCTTGTTTCTGACTTCGGTCTTGCCTCCTTGATAGCACAACCTATTGCAGCTCAGCACATGGTTGTTTACAAATCACCTGAATATGGGTACGCAAGAAAGGTGACAATGCAAGCCGATGTGTGGAGCTATGGTTCACTTCTGATAGAGCTTCTGACCGGAAAAGTGTCTATTAACTCGGCTCCACAAGGAACGAATGGCGTGGATCTATGCAGTTGGGTTCATAGAGCAGTGAGGGAAGAATGGACAGCTGAGATATTTGACAAAGAAATATCAGGGCAAAAGAGTGCACTTCCTGGGATGCTGAGGTTGTTGCAGCTTGCAATGCGTTGCATTGAGAGGTTCCCTGAGAAGCGCCCTGAGATGAGAGAGGTGATGAGAGAAGTGGAGAAAATACAGGTCCCGGTGATCACAGAAGATGATGACGATGTGTCTGGGGATAGGTCCCTAACTGATGATTCTCTTTCAACCAGTACCTCTATCATTGGAGATGAAAGATAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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