Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23893 LG5 69435217 69437279 PREDICTED: transcription factor bHLH25-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 69435225 missense_variant p.Ser345Ala
C/G 69435313 upstream_gene_variant
G/T 69435337 upstream_gene_variant
A/G 69435373 upstream_gene_variant
T/C 69435406 upstream_gene_variant
A/G 69435483 missense_variant p.Leu310Ser
A/T 69435513 missense_variant p.Leu300His
T/G 69435516 missense_variant p.Lys299Thr
A/G 69435966 upstream_gene_variant
C/T 69436041 upstream_gene_variant
G/A 69436197 upstream_gene_variant
T/C 69436235 upstream_gene_variant
T/G 69436280 upstream_gene_variant
G/A 69436298 upstream_gene_variant
T/G 69436324 upstream_gene_variant
G/T 69436359 upstream_gene_variant
T/A 69436435 upstream_gene_variant
T/A 69436610 missense_variant p.Glu157Val
A/T 69436665 missense_variant p.Leu139Met
C/A 69436829 missense_variant p.Trp84Leu
G/T 69436925 stop_gained p.Ser52*
C/T 69436936 synonymous_variant p.Leu48Leu
G/T 69436979 missense_variant p.Thr34Asn
G/A 69437013 missense_variant p.Pro23Ser
T/A 69437077 upstream_gene_variant
T/C 69437194 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23893.1
MRSFHMEISSIRGLPELGIIEDPNFLHQWQLNPTDTSSLTGAAFGESLQKLSFSGNSNFNPKASMETSPNGNERPTKQLRNNSWNGKKSQHQTPETQYASCSNLLSFVNSNYINELGLGKPKVEMACPKIDNSTLAEMLISQGTLGNQNYHFKANQEAIKIETRPKHSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAVKYLKQLQEKVSTLEEEQNRKRTVESVVTVKKSQLSDDAEDSSSSDTGGTLEEALPEIEARFCERNVLIRIHCEKKKGIIEKTISEIEKLHLKVTNSSALSFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSY*


CDS Sequence:
>Vu_23893.1
ATGAGGAGTTTCCATATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGGGATAATAGAGGATCCTAACTTTCTCCATCAGTGGCAGTTAAACCCAACTGATACAAGTAGTTTAACAGGAGCTGCTTTTGGTGAGAGTTTGCAGAAGCTCTCATTTTCTGGCAACTCAAACTTCAATCCCAAAGCATCCATGGAAACATCACCAAATGGAAATGAAAGACCAACAAAACAGCTCAGAAACAACAGCTGGAATGGCAAGAAAAGTCAGCATCAGACACCAGAGACACAATATGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACATAAATGAATTGGGACTAGGGAAGCCTAAGGTGGAAATGGCGTGTCCTAAAATTGATAACAGTACCCTTGCAGAGATGTTGATCTCTCAAGGAACCTTGGGAAATCAAAACTATCACTTCAAGGCCAACCAGGAGGCCATAAAGATTGAAACACGTCCAAAACATTCTCAACCTCAGGACCACATAATAGCTGAAAGGAAGCGGAGAGAGAAACTCAGCCAACGGTTCATTGCTCTATCTGCTCTCGTTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCAGTGAAGTACTTGAAACAGTTGCAAGAGAAAGTGAGTACTCTTGAGGAGGAACAAAACAGAAAGAGAACTGTGGAATCTGTTGTAACAGTGAAGAAATCTCAGCTATCAGATGATGCTGAAGACTCTTCTAGTTCAGATACCGGTGGTACATTGGAAGAGGCACTACCTGAAATTGAAGCAAGATTTTGCGAAAGAAATGTTCTCATAAGAATACACTGTGAGAAGAAAAAAGGAATCATAGAGAAAACGATCAGCGAAATTGAGAAACTCCATTTAAAAGTTACCAATAGCAGTGCCTTGTCATTTGGGAGTTTCATTCTTGATATAACTATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTCGTGAGAAGTTTACGCTCAGCTTTTTCATATTAG


Promoter Sequence:
>Vu_23893::LG5:69437279-69439279(-)
ATATTTAAGATTCAAACTCAAGACCAATGCTCAAAATGTAATAATAATAATAAAAGTAATTAAAAAAAAAAACCCCATTAAGTCGGACTAAAACTAGGCTGTGAGAATGACGACCAAACAAAGATTTTCTGAACTTCAACTGATGAGGTTAACATAACTTAACAATATGCATAATTGATTATTATTACTATTATCATTATTAACAATTCTGATACATTTTTTTTGTCTGAGTAAGTTTTGCTAAAATATAACTTTAAAATAATTAAACTTTTACGTAAAGAGATTTTAGTTTCCTTTGAATAAAAAACAGATTTACATCATTAAACAAAGTACATAAAAAACAGAAAAGGAAAAAAAATTAATAAAAATTCCAATTCTTTTTACTGACAAAACAGTTGAAGTCTTGGTTGAATCCCAAGATGTCTGTGCAAACACGTCGTCTAACTGTATAACTTTGAATCTTGAATCTGAACTTAATTCATGATTAAACCTACTATATTAATTAAATTAGCCTGAATATGTAATAAATTCCCATAGTTTAGACTTGGAATGTCCTTTTAATGATCACTTTGAAATTAACAAGCTATCATCTTCAATTTACTTTTGGTTTTTAAGAGGTGGGAACCGCCAAAACGAAAAAGTGAGAGTAACAAATCCACGTTTATAATGCAAGATTTCTAGAAAAGTACTGTCAAAAATGGTTCCTCTTTCAACACAAACAAACATCATGGCCATTTGTTTCTAAGCCAGCATGTCCAAAACTGGACTCAACCATTCATTTCCCACATGAATCACCATTTGCTAGCCACTCTGGCTCCGAGTTTCTAGGATTGGCGTCAACTGAGTTGGAGAATGATTTGAAAATCTCACCACCATTATTATTTTATACCCTTTGATCATAACAGCAGCACTATTTTTTTCTCTAATTATTGCCTAACTTGTATTCACACTCCTCAGCAAACGACAAAACTACCATCTCTGCAATTTTGAATATCCTTTTAATTATTGTGTGGACTCTTTAATAAGCCGGTTATAGGCCCACACCATCACTGAACCATCAGTTTCCTCTTCCACACATGCCCTTTGGCAATTGGCTGTAATTTTCTTAGTCAATGGAAACTTTGTTGTGTTTCAACAAAAAAAGAAAACTTAGAAATGTTGTTCATGACCAACCTTTTCATTCATATGTGGAAAATGACAACTTACCAACTGGTAATTGATTGCCAGAATCGACTTACCATATACAACACATGATTGCACCATTTTGTTAATTTCCAAGATCTTGCTTGTTTGTTAATATGGATTTCAAATGATATTGACCCAGAGAATGAATAATTGATGAGGAGGGATCTAAGGGAAAAAGGCACAAAAGGGTAAAAGGGAGTTAGGCAAATAGCCTTTGAGGTTTGAGACTTTGTGAGGGACCACAAGACGAGGAACCATCCTTGGATTTGCGAAGCCATCATCAAAAAATTTCAATGTCTAGTTGGTGAAGAACACTGCCAAAGTCCACAAAATAACAATCGGTGGAGGTATTTATTTGTCAGCATGAAGGAGGCTCTAAAATATAAAAAAGGATGAGTGTTGTCTGTTATCCTTAGTTGACAATAGCCTTCTGTGGTTGTGTATAATCCCATTCACATCAACAACCTGTGACCATCACGGTGCAACTGTGTTATATGTTGGAACACTCTCAAGGTAGAGTATGCAAAAGGAATTACAGCAACTGCTGCAGTAACCAGTATTTTTAAGATCTTTTGTAGTATATATATATATGCACGAACATGAAAGCAAGTTCCGAAGAATTATTCTCACTTATTGATTTTAATGCATGTACATGGGATGTTGTAGTCTGAGTATGGCTTTCCTTCTTCCATGAGTTTTTTGCGTAATGGCCATTCAGCAACCAGTACTATTAGCTACATGAATTTTAAGTACCAGACTGATGAACTTCTTCTTACTTCTGTTCCAGGATATTTTCTTCAGCCGTTTTTCATTGC


Gene Sequence:
>Vu_23893(-)
ATGAGGAGTTTCCATATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGTAAGATCAATATCTCATGCATATAATTATTCATAGTTGGAACTATAAGGTAAAATAAGTATATGGAAGTTGATGGTGAATCATTTATTACATTCTTATATTTGGAATCATTTAATTCACGGAGATTAACGTTTAGTTAGGAGACATGTATATAATATATTCTTTCTGGCTAATGAGTACAACGTTTTCTGATTTTTCAGGGGATAATAGAGGATCCTAACTTTCTCCATCAGTGGCAGTTAAACCCAACTGATACAAGTAGTTTAACAGGAGCTGCTTTTGGTGAGAGTTTGCAGAAGCTCTCATTTTCTGGCAACTCAAACTTCAATCCCAAAGCATCCATGGAAACATCACCAAATGGAAATGAAAGACCAACAAAACAGCTCAGAAACAACAGCTGGAATGGCAAGAAAAGTCAGCATCAGACACCAGAGACACAATATGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACATAAATGAATTGGGACTAGGGAAGCCTAAGGTGGAAATGGCGTGTCCTAAAATTGATAACAGTACCCTTGCAGAGATGTTGATCTCTCAAGGAACCTTGGGAAATCAAAACTATCACTTCAAGGCCAACCAGGAGGCCATAAAGATTGAAACACGTCCAAAACATTCTCAACCTCAGGACCACATAATAGCTGAAAGGAAGCGGAGAGAGAAACTCAGCCAACGGTTCATTGCTCTATCTGCTCTCGTTCCTGGCCTAAAGAAGGTGCCTAATAATGTTGTTAATGCCTTTTAATTTTGTCATCATGAATTTGAGGTCAATGCTTATGTCTTTTATAAAGGTAATGTGTTGATTATTGAACATATGAGAGTTTTTGTTGGAAATCTAAACGTGAATCTGTGTATAGAGATGAAAAGTTGAACATATAGAAAACTCAACTCTATTACCTTAAGGTTTTTGATCAAATGTAGTATTATTCTTTTATCTTAGTTTGGTTAAAGTTTCATTCATGTTGTGTTTTTTCAGTGAATACACCTGATAAAGACACATCACCTTATAAGAAATTGTCTTAAGATTTTAAGTTGAAAGTGGTATCTTCTGCTAAATTTCTTCGATAAAGATTTCTTGCTTCTTTTGTCTAAACATGTTTCACCTTAAATAGTCTAGTAAGAAACTATAGAAGATTTCATGTATTCCTTTGGTGTTTCATCAACTCGATTAGGATATTATATGAAATCTTTTGAATGGAAGACAGAAAGAAAGCTCTTGAATTGAATATGTAACATTATATGCTAGTAAATAGTAATAGTTTTTATGTTGTCCTAGTAGTTACTATTTAATTTTTTATCATTCGCTTTCTTAGATTATGACTCCTTTAACCCGAAATAGTGTTTACAGTCTCCTTTTGCTTTTTTTCAATTCCCTACTAACAGATGGACAAAGCTTCTGTTCTTGGAGAAGCAGTGAAGTACTTGAAACAGTTGCAAGAGAAAGTGAGTACTCTTGAGGAGGAACAAAACAGAAAGAGAACTGTGGAATCTGTTGTAACAGTGAAGAAATCTCAGCTATCAGATGATGCTGAAGACTCTTCTAGTTCAGATACCGGTGGTACATTGGAAGAGGCACTACCTGAAATTGAAGCAAGATTTTGCGAAAGAAATGTTCTCATAAGAATACACTGTGAGAAGAAAAAAGGAATCATAGAGAAAACGATCAGCGAAATTGAGAAACTCCATTTAAAAGTTACCAATAGCAGTGCCTTGTCATTTGGGAGTTTCATTCTTGATATAACTATTATTGCTCAGGTAATTTCTGCACTTTTTCCATTCAAATAATTCATAAGTGTTCATGAATAGTACAAAATGCTCAATTGGTACGCATCATTTGTTGTTTTGCACCAATTTGTTCCTTTAAGGTATAATTTTCTTTCAGTAAGGAAACCGTTTCTGAAAATTGCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTCGTGAGAAGTTTACGCTCAGCTTTTTCATATTAG