Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23871 LG5 69294362 69296529 PREDICTED: mediator-associated protein 1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, biological_process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus, mediator complex
Cellular Component   located in   nucleus, nucleolus
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/A 69294561 missense_variant p.Glu470Val
T/A 69294570 missense_variant p.His467Leu
A/G 69294626 synonymous_variant p.His448His
G/A 69295055 synonymous_variant p.Ala305Ala
T/G 69295104 missense_variant p.Gln289Pro
A/T 69295108 missense_variant p.Phe288Ile
C/A 69295138 missense_variant p.Gly278Trp
T/G 69295339 missense_variant p.Thr211Pro
A/G 69295935 upstream_gene_variant
G/A 69295946 upstream_gene_variant
T/C 69295949 upstream_gene_variant
T/C 69295958 upstream_gene_variant
T/A 69295976 upstream_gene_variant
C/T 69295989 upstream_gene_variant
A/T,C 69295992 upstream_gene_variant
G/T 69296037 upstream_gene_variant
C/T 69296075 upstream_gene_variant
A/C 69296125 upstream_gene_variant
T/C 69296195 missense_variant p.Asp112Gly
T/A 69296259 stop_gained p.Lys91*
A/T 69296309 missense_variant p.Phe74Tyr
C/T 69296331 missense_variant p.Ala67Thr
C/T 69296400 missense_variant p.Glu44Lys
G/C 69296411 missense_variant p.Ala40Gly
T/C 69296445 missense_variant p.Ile29Val
A/G,T 69296446 synonymous_variant p.Leu28Leu
A/T 69296455 missense_variant p.His25Gln
T/C 69296456 missense_variant p.His25Arg
A/T 69296458 synonymous_variant p.Leu24Leu
A/G 69296459 missense_variant p.Leu24Pro
C/T 69296475 missense_variant p.Glu19Lys
G/A 69296477 missense_variant p.Pro18Leu
A/G 69296480 missense_variant p.Ile17Thr
A/G 69296483 missense_variant p.Phe16Ser
A/C 69296485 synonymous_variant p.Gly15Gly
A/G 69296502 missense_variant p.Ser10Pro
G/A 69296508 missense_variant p.Leu8Phe
C/T 69296521 stop_gained p.Trp3*
C/G 69296522 missense_variant p.Trp3Ser
A/G 69296528 start_lost p.Met1?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23871.1
MSWQYINLNSNTFYGFIPENYGFLHSLLILSLSGNDVTTAVPSEIGSCSDIESLELGSNTIVGRIPADLSRLTFLRVLDFGGNNLTGDLPKEISKCLGLTTLLVDYNHISKDGEKQKRPSPLDEPPTASSSDSEEEETQKPSSLRHGNEEEEASSGEDEESSGEEAEDDDLPPPITKTNPPPAPTNPHPESASSDSETESESETESETESTPAKAVKPLATKPMDQAQKPKALPSPAPPKPAVKRAAENSNAHVAKKKKKSGDSSSSPAASDEEMEEGKKSGDQMKKFQRLWSEEDELAILKGLAEFTSKTGNDPLKFAGGNAFHDFLKKSLHVEVTSNQLKEKARRLKKKYEIAAVRGNSADGLIFAKPHDQKTFELSKKVWGSEQDGGVANGAVEKPKANGNAAKSPKKKETGSRNVASAKKTKPEPKQETVPATRMEFKESEKMHIDQKTVNCEVSMFLHALSHFKEGLGVCGLDEEDVKKGLELIGESKRTELRAKWKKLQRTELELFANRSELIGEQTKLIVEALRSSNH*


CDS Sequence:
>Vu_23871.1
ATGAGCTGGCAATATATTAATCTCAATTCTAATACCTTTTACGGTTTTATTCCTGAAAATTATGGCTTTCTTCATTCCTTGCTTATTCTTTCGTTGTCTGGTAATGATGTTACAACAGCAGTCCCTTCGGAAATCGGAAGTTGCTCTGATATTGAAAGTCTTGAGCTTGGATCAAACACTATAGTAGGTCGCATTCCTGCCGATCTATCTCGTCTTACCTTTTTAAGAGTGCTTGACTTTGGTGGAAACAATCTAACTGGAGATTTACCTAAGGAAATCTCCAAATGCTTGGGGCTAACAACTTTGCTAGTAGATTACAACCATATTTCCAAGGATGGGGAGAAGCAGAAGCGTCCTTCCCCTCTGGATGAGCCACCCACGGCTTCTTCTTCAGATTCCGAGGAAGAAGAAACGCAAAAACCATCTTCTCTGCGGCATGGAAACGAAGAGGAAGAAGCTTCGTCGGGAGAAGATGAAGAATCCTCTGGAGAAGAGGCAGAAGATGACGATCTTCCACCACCCATCACCAAAACCAACCCTCCACCCGCTCCCACGAACCCTCATCCCGAATCCGCATCTTCTGATTCCGAAACAGAATCCGAATCAGAGACCGAGTCGGAAACTGAATCCACTCCTGCGAAGGCGGTAAAGCCTCTCGCGACAAAGCCCATGGACCAGGCCCAAAAGCCCAAGGCCCTACCTTCTCCGGCGCCACCCAAACCGGCTGTGAAACGCGCCGCCGAGAACAGCAACGCCCACGTCGCGAAGAAAAAGAAGAAATCCGGCGATTCTTCTTCTTCCCCTGCCGCTTCCGACGAAGAGATGGAGGAAGGGAAGAAGTCCGGCGATCAAATGAAGAAGTTTCAGAGGCTGTGGAGCGAGGAGGACGAACTCGCCATTCTCAAGGGCTTGGCCGAGTTCACCTCCAAAACAGGGAACGACCCTCTTAAGTTTGCGGGTGGCAATGCTTTCCATGATTTCTTGAAGAAGTCGCTGCATGTGGAAGTTACCAGCAACCAGCTGAAGGAGAAGGCTCGGAGACTAAAGAAGAAGTATGAGATCGCTGCAGTGAGAGGGAATAGCGCTGATGGCCTTATATTTGCAAAGCCGCACGATCAGAAAACGTTTGAATTGTCGAAAAAGGTTTGGGGAAGTGAGCAAGATGGTGGAGTGGCCAATGGGGCAGTGGAAAAGCCCAAGGCTAACGGGAATGCTGCTAAGAGTCCGAAGAAGAAGGAAACCGGTAGCAGGAATGTGGCTTCTGCCAAGAAAACTAAACCTGAACCGAAACAGGAGACGGTGCCAGCGACGCGCATGGAGTTCAAGGAATCTGAAAAGATGCATATCGATCAAAAGACTGTTAATTGTGAAGTGAGTATGTTTTTGCATGCATTGTCCCACTTTAAAGAGGGTCTGGGTGTTTGTGGGTTGGACGAGGAGGATGTGAAGAAGGGGTTGGAATTGATTGGTGAATCGAAGAGGACAGAGTTGAGGGCAAAGTGGAAGAAATTACAACGTACTGAATTGGAACTTTTTGCTAATCGCTCAGAACTGATTGGGGAGCAAACTAAATTGATAGTTGAGGCACTTCGGTCGTCCAACCATTAG


Promoter Sequence:
>Vu_23871::LG5:69296529-69298529(-)
CGTTCAACCCACTGACATTATCAGTTAAATATTTTTATTGCTTAACTATTATGTGAAAAAATATTGAATAATCACTTATTACATTGATGTTGTGTGTGATTATTGTCTGATAAATCGTGTTTTTAAAGTTTTGTAATTTTCTTAATTGAAATAAACATGCTTACTTTTTCAAAAATGCTTTTGTGTGAAAATATCTCTAATGGAAATTTCGAAGTCAGTCAGAGATACTTTTATTTTTTATGGAACATTTAAAATTATACCTTATTATTATCATATATTTTATCATTTAATCTATTGTCGTTTTTAGGGATGTACTTTTTACTATATTTATTTACACTAACTATTTAATCTAGTTAGAAAAATATATTTTAAATCTCAGTATTTTTACTTTTCTCGAAAATATTGAAAATCGTATCTAGGTAAAAATTTATTATTATGTGAGCTAGACTATATTTATTAGAGTTTTTAGATTTTTACTCAATCTGAATACAAGATAATTAAAAATCAATTAAATAAAGGTTAGACATTAGGTTATGTTTTTTCTTTCTTTTTCTCTGTCTCTCACAAACACATTTGTTCTGATTGTTTTCTTTTTAAACGTATTCTCTATTATTGTTGTTCTCCAATGGATTTTAATATATTTATGAAACATGTTACTATTTTAAGAATATTTGTATAAATTTTAATCAAATAAACAACATTACAACACTCGGCATTCTTATTAATTCTCAAATTACTCTCCCTTGTGTGTATAATTGAAATCAAACAAGTAAACAAAAACCCAAATATATATGTAGAGAGAGACTGTGTAAAAAGATTACAAATTCATACATAGTGTATACAATTATAGATATACGATGACGAAATAAAACCAATGAAAGATGTGAATATTTTAAAAATATTTTTAATCAAGTATAAATTTTAGCTAGAATAAAATAAATATCTATATATATAATACACTTCTTATATTATAAATCTGGATTCTTATTTATTTATTTTTGGTTTTTGTTCATATATTTAATTTTTAACTACTTATTCCTTTTCCTTCTATTACTTTTATATATATAAATTTAAATGTATATCGAGATTTTCAATAATTAAAAATAATCTTATTATTCCATGTAGGATAAATATGATTGTGGTTTTTTTGAATTATATTGATTATAATATAATGGGTTAAATATGTTTTTAGTCTCTATATTATCAAGCGATTTTGGGTTTAGTTCCTCTTCCAAAGTAAGATACATTTTAGTCATCTTTCTTAGGGAAACTTTGATGTTAGTCATCTAAAACTAACACCGTTAAAAACCAGTTGATGTAGCTAACGGTAGACTCACACGATTTTTTTTTTGTGCTGAGTCAGTGTTTCTCACCTTTTCTCCCTCTCTCTCTCTCCTTCGTCTCTTCCTTCCATCTTCCACTCAATTCGAAGGAGAGAGACTGTAAAGGCCAGTCTGACAGCTACCGATCAATGGAGAAAGACATCCGCCCATGGCCAGGCCGCCGTGTTCATCATTCAACTTCGTTGCCAGAGCACGACCTCCGAACTCCAGTCCCTCACGAGCATCGTCGCCGAAGGCAGAAGTGACTGGAGGCCTCTCGCCCGTGTGAGCGCTGATGACGGCGGAATCCACTGTTGGCGACCTCATAGAGGTGGCTCTGTGACAGTACATGAAGGAAGGTCACTGGTTGCCCTTCGGTCTCTGAACTTTTATTCGTTGTGGGGTCTGGAGATCTCAACAAAAAATCGTTGCTTCGCTTTAGTCAAAGTGGACTTTTCATTGGTCGATACTGCTACAGGAAAGTGCTCCAATTCAGGGTTGTGGGTTCATGATGTGCTAGCCTCCCTATCAACCATAAGGGAATCCTTTCAAGCTAACTACGCTTGACTTGAGCAAACCGAATTTTTTTGGAGAACTACCGCTTGAGCTCTCGGGATTGCCTAATTTGCAAGTTACAATGAGTTATCTGGTGATGTGCCTGAAGGATTTAGTAGTTTG


Gene Sequence:
>Vu_23871(-)
ATGAGCTGGCAATATATTAATCTCAATTCTAATACCTTTTACGGTTTTATTCCTGAAAATTATGGCTTTCTTCATTCCTTGCTTATTCTTTCGTTGTCTGGTAATGATGTTACAACAGCAGTCCCTTCGGAAATCGGAAGTTGCTCTGATATTGAAAGTCTTGAGCTTGGATCAAACACTATAGTAGGTCGCATTCCTGCCGATCTATCTCGTCTTACCTTTTTAAGAGTGCTTGACTTTGGTGGAAACAATCTAACTGGAGATTTACCTAAGGAAATCTCCAAATGCTTGGGGCTAACAACTTTGCTAGTAGATTACAACCATATTTCCAAGGATGGGGAGGTTGGGTGGAAGATGGGAAGGAAGAGACGAGGGAGAGAGATGGAGAAAAGATGAGAAACACTTACTCAGCGTAAGAAAAAAAAATCGTGTCAGTCTATTGTTAGCTACATCAGTTGATTTTTAACAGTGTTAATTTTGGAGGACTAAAATCAAAGTTTATTTAAGGAGGAGGACTAAAATGTACCTTACTTTGAATAGGGAACTAAAACCAAAATCGTTTAATAGTATAAGGACTATAAAACATATTTAATCTTAATATAATATGTAGAAATAATAAATTTAATAATTGAAATATTGAGAAGTAGTGAGAGAAAGATTTCAATGGTCTTTTTGAATAAAGTAAAATATGGCCAACTTTTATTGGTGTGCTGAACGGTTGACCTTTTCCTTTCACTTATACCCTTTTCACCCTTTCTTTCTATTTGTCATTTATATATATATATATATATATATATATAAAGTTCCATTATCAGTTTTATTTACTTTTATATTTCTCATTGTTGTTTTCAAAACCCTAATCAGACTTTCACTAACCCTAATTCTTCCTGTCCATGGCGCAGAAGCAGAAGCGTCCTTCCCCTCTGGATGAGCCACCCACGGCTTCTTCTTCAGATTCCGAGGAAGAAGAAACGCAAAAACCATCTTCTCTGCGGCATGGAAACGAAGAGGAAGAAGCTTCGTCGGGAGAAGATGAAGAATCCTCTGGAGAAGAGGCAGAAGATGACGATCTTCCACCACCCATCACCAAAACCAACCCTCCACCCGCTCCCACGAACCCTCATCCCGAATCCGCATCTTCTGATTCCGAAACAGAATCCGAATCAGAGACCGAGTCGGAAACTGAATCCACTCCTGCGAAGGCGGTAAAGCCTCTCGCGACAAAGCCCATGGACCAGGCCCAAAAGCCCAAGGCCCTACCTTCTCCGGCGCCACCCAAACCGGCTGTGAAACGCGCCGCCGAGAACAGCAACGCCCACGTCGCGAAGAAAAAGAAGAAATCCGGCGATTCTTCTTCTTCCCCTGCCGCTTCCGACGAAGAGATGGAGGAAGGGAAGAAGTCCGGCGATCAAATGAAGAAGTTTCAGAGGCTGTGGAGCGAGGAGGACGAACTCGCCATTCTCAAGGGCTTGGCCGAGTTCACCTCCAAAACAGGGAACGACCCTCTTAAGTTTGCGGGTGGCAATGCTTTCCATGATTTCTTGAAGAAGTCGCTGCATGTGGAAGTTACCAGCAACCAGCTGAAGGAGAAGGCTCGGAGACTAAAGAAGAAGTATGAGATCGCTGCAGTGAGAGGGAATAGCGCTGATGGCCTTATATTTGCAAAGCCGCACGATCAGAAAACGTTTGAATTGTCGAAAAAGGTTTGGGGAAGTGAGCAAGATGGTGGAGTGGCCAATGGGGCAGTGGAAAAGCCCAAGGCTAACGGGAATGCTGCTAAGAGTCCGAAGAAGAAGGAAACCGGTAGCAGGAATGTGGCTTCTGCCAAGAAAACTAAACCTGAACCGAAACAGGAGACGGTGCCAGCGACGCGCATGGAGTTCAAGGAATCTGAAAAGATGCATATCGATCAAAAGACTGTTAATTGTGAAGTGAGTATGTTTTTGCATGCATTGTCCCACTTTAAAGAGGGTCTGGGTGTTTGTGGGTTGGACGAGGAGGATGTGAAGAAGGGGTTGGAATTGATTGGTGAATCGAAGAGGACAGAGTTGAGGGCAAAGTGGAAGAAATTACAACGTACTGAATTGGAACTTTTTGCTAATCGCTCAGAACTGATTGGGGAGCAAACTAAATTGATAGTTGAGGCACTTCGGTCGTCCAACCATTAG