Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23864 LG5 69250784 69254528 PREDICTED: transcription factor DYT1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, anther wall tapetum development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, anther wall tapetum development, regulation of transcription, DNA-templated, anther wall tapetum development, anther wall tapetum development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, anther wall tapetum development, anther wall tapetum development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, anther wall tapetum development, regulation of transcription, DNA-templated, anther wall tapetum development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein dimerization activity, sequence-specific DNA binding, sequence-specific DNA binding
SNP Position Effect Amino acid change
C/G 69251033 downstream_gene_variant
T/C 69251147 downstream_gene_variant
T/A 69251338 missense_variant p.Glu266Val
T/C 69251425 synonymous_variant p.Gly262Gly
C/T 69251426 missense_variant p.Gly262Glu
T/C 69251432 missense_variant p.Asn260Ser
T/C 69251634 downstream_gene_variant
A/T 69251691 downstream_gene_variant
A/G 69251730 downstream_gene_variant
T/C 69251790 downstream_gene_variant
G/A 69251838 downstream_gene_variant
C/T 69252062 downstream_gene_variant
C/A 69252466 downstream_gene_variant
G/A 69252562 downstream_gene_variant
A/G 69252585 downstream_gene_variant
A/C 69252608 downstream_gene_variant
C/T 69252640 downstream_gene_variant
T/C 69252651 downstream_gene_variant
C/G 69252668 downstream_gene_variant
G/C 69252808 downstream_gene_variant
C/A 69252809 downstream_gene_variant
G/A 69252830 downstream_gene_variant
C/T 69252858 downstream_gene_variant
G/A 69252872 downstream_gene_variant
C/G 69252885 downstream_gene_variant
A/G 69252886 downstream_gene_variant
A/T 69253006 downstream_gene_variant
A/G 69253049 downstream_gene_variant
T/A 69253056 downstream_gene_variant
G/A 69253080 downstream_gene_variant
T/C 69253157 downstream_gene_variant
A/C 69253276 downstream_gene_variant
G/T 69253282 downstream_gene_variant
C/A 69253293 downstream_gene_variant
T/C 69253360 downstream_gene_variant
C/T 69253431 downstream_gene_variant
C/T 69253456 downstream_gene_variant
T/A 69253457 downstream_gene_variant
C/G 69253590 downstream_gene_variant
G/A 69253603 downstream_gene_variant
C/T 69253690 missense_variant p.Ala198Thr
G/C 69253706 synonymous_variant p.Leu192Leu
G/A 69253824 missense_variant p.Ala153Val
A/T 69254153 downstream_gene_variant
T/A 69254271 missense_variant p.Arg69Trp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23864.1
MLSLHIPFPKTHPAPSQMEYEDEDWLCVTMEEFSLATENGSSKQGIGRKRNYDDGTREFKSKNLETERRRREKLSSRLLMLRAIVPIITNMNKATIIEDAITYIEKLQDKVQSLSQELHQMETTSEETGNTTDEIDAAQDMKDLGIQEEVRVAQIDGNKLWVKIIIQKRKGRFRKLMEALNNFSIELIDTNLTTTKGAFLISSCIQMNRGTIIVDAITYIEKLQDEVQSLSQQLHQMEATSEETTETKIDEIEAVEDMKNWGIQEEVTVAQIDENKFWVKIIIEKKRGSFSKLMETLNYFGIELMDTNLTTTKGAFLITSCIQGKNGERLEINQIKDLLQDIINDM*


CDS Sequence:
>Vu_23864.1
ATGCTCAGTTTACACATCCCTTTCCCCAAAACCCATCCTGCACCCTCACAAATGGAGTATGAAGATGAAGATTGGTTATGTGTAACTATGGAAGAGTTTTCTCTTGCTACTGAAAATGGTTCTAGCAAGCAAGGGATAGGTCGGAAGAGAAACTATGATGATGGCACCAGAGAGTTCAAATCAAAGAACCTAGAAACGGAAAGAAGGAGGAGGGAGAAGCTCAGTAGCAGACTCTTGATGCTTCGTGCTATAGTGCCTATCATCACAAATATGAACAAAGCCACAATTATTGAAGATGCTATCACCTACATTGAGAAGCTTCAAGACAAAGTCCAGAGTCTCAGTCAAGAGCTTCACCAAATGGAAACAACTTCAGAGGAAACAGGAAACACAACAGATGAAATTGATGCTGCACAAGATATGAAGGATTTGGGAATACAGGAAGAAGTTAGGGTGGCACAAATAGACGGAAATAAACTCTGGGTTAAGATCATCATTCAGAAGAGAAAAGGAAGATTCAGAAAATTGATGGAAGCTCTCAATAATTTCAGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAGCATTTCTTATTTCAAGCTGTATACAGATGAATAGAGGAACAATTATTGTAGATGCTATCACCTACATTGAGAAGCTTCAAGATGAAGTTCAGAGTCTCAGCCAACAACTTCACCAAATGGAAGCAACTTCAGAGGAAACAACTGAGACAAAAATAGATGAAATTGAAGCTGTGGAAGATATGAAGAATTGGGGAATACAGGAAGAGGTCACTGTGGCACAAATAGATGAGAATAAGTTCTGGGTCAAGATCATCATTGAGAAAAAGAGAGGAAGCTTCAGCAAGCTGATGGAGACACTCAATTACTTCGGCATTGAGCTCATGGACACTAACCTGACTACCACAAAAGGAGCATTTCTGATTACAAGCTGCATACAGGGAAAAAATGGAGAAAGACTTGAAATTAATCAAATCAAGGATTTGTTGCAAGATATTATCAATGACATGTAG


Promoter Sequence:
>Vu_23864::LG5:69254528-69256528(-)
TCACACCTAAAATAATAGATCTAATAAATATAAAATCATATTATATAATGACTTTTTTTTTCTGTGGAAGATATGAAAAACTTGGCATGCCTAAATACATCCATTATTGCATGCACAATTAAGAGGATGTGACGTGAGTGAGGCTAAGTTCGAATTTAAAAAATCGACAATGATATTGATAATATTTTTTTACAATATTTTAACACTATTTACATGTCATTCTGTAATTGATCCAAAATTACTCTACAATCAATAATAATAATAATCATAAACATCAACATAGACCAAACACAGAATGACACGTAAATAGTATTAAAATGTTGTAAAAAAAATATTATCAAAAGTATTATTATCAAGCATTTAGGTCAAATTCTTGGTGCTGGCTTTTTCACACTCTCATTACAGCAGTCATCTAATGGAATTCTGGCCATAAGTAGATTCTACGGTCATGCTTTGCTTCAATAAAGGGAAAAAAAAATCTTTACACCTACCATTTGATAATCTTAACTAGACAAGTTTGTCAAATGTATTGCTATTGGAAAAGTTAGTTATATTTTGTTCCTCGTTGCTGGTATATCTTATTAGTGTTAATTCCAACTTTATCAATTCATCCATAGTATAAAGGATTTGATTTAATTGTTAAAATAATTAATATGTGAGCCTTTTTACCTTATGTTTTTCATTCTTCCCTCCAATAATTGATTTTAATACCCTACACATCTACATTAACTATTCTATCGTGTCCACACCTGAACAAGATCGTGTTTTTACACACTCTTCACAATGTTACTAGAAAATAAAACATCATTATAAGAAATAAACTGCTTATTCGGAATAATTAGTAAGAAAAAATAATTCTCCAAAAAAAAAATTATTTTTGTGTATCTAAACTTGTAATTTGTGATTTGTTTTTACAGTATTTTTGTTTCAAAGAATTTTTTTACATCATTTTTTTATTTCTTTATAAGTAATTCTTATTAAATGGACATAATTTACTTTAGCCATTAACTATCGGTTCAATTAATAGAAGAACGAGACATAACTGTTGAGGTAGATTTTAAACTACTTTTTGAAAACCCTTGAAAAATATGAATCTTTAATGCGTGCAAATTTTTGGAACAGAATTGTTGTGTTAAATAAAGGTGTAGACATTTATTTATAGATAAATAATAAATTTTATTAAAACCTACTAGTACCCCACATGTGTATATTATACTCTTTAGATCGTTTCATCATATGGTGAGGAATTAAAGTGTGGAGTATAGTTCGTTATTTAGAGAGGTTAAATTAACAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCCAATATAATTTTCTCAAAAACATTTTTTTATAAGGGTTTGTTATTTTTCTAAGGTAGAAATGCAGCCCAATACCATCAATATATATGGAATGAGGATAGCAATAAATACAAAAGTTAGAATCAATAAAGTACTAATCTTCAAAACATCAAATTCTACTTTGCTTTGGGTTTATACTCAACTGTGCTATTTCATTTTCATTCAGCAAGCCCAATTTCAAAGGGCCTTACAAATCACACCTAAAAAACATACCCAGATTTATTTTCTCTTTGGTAGAACATAAAAATTATTTATTTTAAACCCAATTGCAGCATTTGGATTCAACCGGAGTACAAATAAGGAGAAAATGTCTCTGAGGTAAATTTACCAATCTCATTAGATAATATGTTTTTCTTTTGAGACCTTTATCAGACTATAATCAATGAAAAAACATTACGAACACCTTCAATGTGATTTGTAGTGGCATTTTCACGCTGTTAGAAAGATTGTAGAAAAAAAAAATCAGTTAGAAAGATTCTAACAAGCAGAAAACACATTTGAACAGCCTATCACAAACATATGTGTCATAAGAAACATACCAGAACTAACTTGGGACCACACAGAAAGAAGACCCTCAAAACATGCATCAATGTACTTTCTATCTCTTCT


Gene Sequence:
>Vu_23864(-)
GTTGTTTCTCTGACATGATGCCTCTATGAAAACCACTTATATAGCCACCAACCATGCTCAGTTTACACATCCCTTTCCCCAAAACCCATCCTGCACCCTCACAAATGGAGTATGAAGATGAAGATTGGTTATGTGTAACTATGGAAGAGTTTTCTCTTGCTACTGAAAATGGTTCTAGCAAGCAAGGGATAGGTCGGAAGAGAAACTATGATGATGGCACCAGAGAGTTCAAATCAAAGAACCTAGAAACGGAAAGAAGGAGGAGGGAGAAGCTCAGTAGCAGACTCTTGATGCTTCGTGCTATAGTGCCTATCATCACAAATGCAATTATCTACACTCTTCACTTTCTTATATGATTCTTCTTCTTTATCTGATTCTTCGTTCAATTCTAGGGATGCAATGTAATATGATTATAAACTCTAATTTTGGTTTTAGATGAACAAAGCCACAATTATTGAAGATGCTATCACCTACATTGAGAAGCTTCAAGACAAAGTCCAGAGTCTCAGTCAAGAGCTTCACCAAATGGAAACAACTTCAGAGGAAACAGGAAACACAACAGATGAAATTGATGCTGCACAAGATATGAAGGATTTGGGAATACAGGTCATACACTAGTTGGTTGAAAAAAAATGAATAATCTATGCAACTATTAATTGTTAATGTTGTTGTGCTGGTTTCTCTGCAGGAAGAAGTTAGGGTGGCACAAATAGACGGAAATAAACTCTGGGTTAAGATCATCATTCAGAAGAGAAAAGGAAGATTCAGAAAATTGATGGAAGCTCTCAATAATTTCAGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAGCATTTCTTATTTCAAGCTGTATACAGGTGATAAGATAAGACGCAAACTTGCTTATTTTTATTTTCAATGAATATGATTTCAGCATACGAGGATGAACTTGGGTTCATCTGTAAATATTCCACATGTACCTTCCAAATCTTAACCATGATATAATATTCACTTCAATTATTTAACTGTTATTTCCATATTGTTCAGGACAGAGATGGTGAAAAACTTGAAATTCAACAAACCAAGGATTTGTTGCAAGACATTATCAATGGCATATAGGGCTAGTTTAATTTATTGGTTGGAACTGTTCAATGATCACTTACATCTGTATTAAGCAACATAAAACATTCAATATAGATTATAAAATTTCTTGTTGATCTCCTACTTTCTTATTTATAATATCAATTTGAAGAAAAAAACTCATTTTAACCATTAAAAACTAACTAAATGAATAATATTTTTACAGCAGAAAATAAAAATTGATCACAGCATGTGTTAGTATATAATAACAATTTAGTTTTTTTTATTCATTAATGATATCTCTACAATCACTCTCAGCAATGAAAATCTCTACATATTTTTTTCCCTTTATTATATTAAAATCCATTCTATCCATGATTGCATTATTAGTAAAAGTGTATAGCCAGCCATATTTTTTGTCAAAACTAAATGACACTATCCGAATGAATGTGTTATATAGTATTGTCTTAAATGTACACAAGTTTTTCAAAGTTTTAAGGATTAAAATAAATAAAATTCAAATAAAAATTAATATATAAAATCATTATATTTCAAGAGACTAAATATATTTCAATTGAAACAAAAACAACTACAGTTTCGTATGAGTTAATATGTCATATATTAAACAAGACGTTTTGCTCTAAAGAAACCAGCAAACTTAACTGTGCTGTGGCACTCTCAGTCAGACAACAAGGTCACCTACCAAAGGACTTAAAAAACACTGGGATATGGAAAGTTTATTTGAGGAGTGTAACATGAAAGTTTTTTTTTTCTTCTTTTTACTATGTTCTGTGTCCACCAATGCTCCATAGTACAAATAGGTAGTCACTCAAAAATTTAGATGACATGGTTGTGTGAGTTTTTTTTTTTAATACATTTAATTTCTCTTATCTTATATGCATTTGTTTCTCCATAACATTCACATTTAAGCTGTTAACCATAAATACTTATTTTTTATAGTACTATCTTTGCATATATGATTGATATGTATAAATGAAATAATAGTAAGTAGGAAATAAGGATATCAATAAAAAATTAATTAAATTTATCTTAAATTTTTTAAAAAAATTAATTTATTAAAAATGCATAAATGAAACCCTATTAAAAAATGTAAATGTTGTGGGAGGAAATTTTGAAGAAATGACTGAAGATTTATTTTTGAGAGCTTTTTATCAAAATATAAATCAAAGAAAGAAGTTAGATAGAACTTCAATGTGATTTCTAACTGCATATATTACAATAAAATATCCAAAGTTCATAGTCTCATTCTGTTAAGAAGATTCCAACAAGCAGAAAACACATTTAACCAGCAAAACACATATATTTCTCTCTTGTCATAAGAAACATACATGAATTAAGTAGGGACCACAGAAAAGACCCTCAAAACAAGCATTAATGTGCTTTCTCTATCTGGCATGATGCCTCTGTGAGAAACACTTATATAGTCACAAACAAAATATTAATCTACAAAACCTTTGGAACAAATCTCTTTTATACCTGTCTCTGCTTCATTCCTTAAGACCTGTTTTCTCAAAAAATGGAGCATGAAGATGAAGATTGGTTGTGTTATACTATGGAAGAGAATGATTGTAGCAGACAAAGGATGAGTAGGAAGAGGAACTACGATGATAACACAAAAGAGTTCAAATCAAAAAACCTTGAGGTTGAAAGAAGGAGGAGGGAGAAGCTCAGTAGGAGGCTTTTGATGCTGCGGTCTATAAACCCTATCATTACAAATGCAACTATCTAAGCCCTCATTTCCTTACTTCTTGCTTCTTTGTCTAACAGTTCATTCAATACTCAATTTCATTGTTTGATTTCCAATTTATTAGAATATAGGCTCATTATAGACTCTAAATTTTATTTTAGATGAATAGAGGAACAATTATTGTAGATGCTATCACCTACATTGAGAAGCTTCAAGATGAAGTTCAGAGTCTCAGCCAACAACTTCACCAAATGGAAGCAACTTCAGAGGAAACAACTGAGACAAAAATAGATGAAATTGAAGCTGTGGAAGATATGAAGAATTGGGGAATACAGGTCAGTTATAACTAAGATAGTTCCTTAGAAGAATGAATAGCTTAACTACCAATGTTAGCACTCTTATTTTCTGCAGGAAGAGGTCACTGTGGCACAAATAGATGAGAATAAGTTCTGGGTCAAGATCATCATTGAGAAAAAGAGAGGAAGCTTCAGCAAGCTGATGGAGACACTCAATTACTTCGGCATTGAGCTCATGGACACTAACCTGACTACCACAAAAGGAGCATTTCTGATTACAAGCTGCATACAGGTGATTCTGAGAATGATAATAAGACTTTTTTACTACAGTTATTTATCAAATTCATAAGAGACTTAAGATGAAATGTGATTTATCTTTTCACTATTATGAATATGTAGTTGTTCATGCTTACTTCACAAACTTGACAATATGATAATATAATATTCACTTTGATGATTGTTCAGGGAAAAAATGGAGAAAGACTTGAAATTAATCAAATCAAGGATTTGTTGCAAGATATTATCAATGACATGTAGAGAAGTTGCAATGGACTTTTATCAATTGCATAGAAAGAATCTGAAAAGGACTTTTTATTTTTCTATATAATGATTACACTATTACTGGAAATAAGATATATATTTCTTTTTGTTATATGAATGAATAATGCACATCC