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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23851 LG5 69172418 69175401 PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 69172539 missense_variant p.Ala41Val
C/T 69172566 missense_variant p.Ala50Val
C/T 69172719 missense_variant p.Ala101Val
A/C 69172852 synonymous_variant p.Thr145Thr
G/A 69173393 missense_variant p.Glu326Lys
C/A 69173961 missense_variant p.Ser433Tyr
C/T 69175110 synonymous_variant p.Asn574Asn
A/G 69175173 synonymous_variant p.Val595Val
A/T 69175183 missense_variant p.Ile599Leu
T/C 69175241 missense_variant p.Ile618Thr
T/C 69175338 synonymous_variant p.Ser650Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23851.1
MLPAFLILLSNLYMSFGAGLDTITVSQLMSDPETLTSNDGAFKLGFFSPANTTNRYVGVWYLTESNVIWVANRARPLEDSSGVVTISNDRNLVVLNGKKQAVWSSNVSNIESNTTVQLQNTGNIVLLDSLTGKTIWESFKQPTDTFLPNMIISSNQVTGKKDKKTSWKNPSDPAVGIFSASLERLSLPEVFVWNQTQPYWRSGPWNGQVFIGLPRMYTSAYLNGFSLAREDDGTVSMVYSLPNHSFFGTMALSSEGRLVYSSWMNRRQVGKRVIYYSNCDIYGFCGAYGSCDPDKVPICSCLRGFEPKNREEWDTQNWTSGCVRKEALKCERSEASTGDGFEKLQMSKVPDFALQSSVSIDTCRTECLNKCSCTAYAYDAGIGCMSWKGELIDIVRFSSGGLDLYIRQAPSELSNYCPFSFLRQFIVLILVGVPDISKNGKITIIGAEHKGKPSRKKNCRFEWRAGTNPAKKSVLDWQKRFNIIEGVSRALNPKISDFGMAKIFGGSEDEANTRRVVGTYGYMSPEYAMQGLFSEKSDVFSYGVFLLEIVSGRKNSSFGNEEESLSLLGYAWKLWNEGEIESLIDPEIFNPENVEHVLRCIHIGLLCVQELAKERPTMAIVLSMLNSEIVNFPPPRQPAFIQRHTELEGESSQRSHESNSINSVTVTSVHGR*


CDS Sequence:
>Vu_23851.1
ATGTTACCCGCTTTTCTCATTCTGTTGTCGAACTTGTACATGAGTTTTGGAGCTGGCTTAGACACCATTACAGTGTCTCAATTGATGTCAGACCCTGAAACCTTGACCTCTAATGACGGCGCATTCAAGCTAGGATTCTTCAGCCCTGCAAACACAACAAATCGGTATGTAGGGGTTTGGTATCTCACTGAATCCAATGTCATATGGGTGGCCAACAGAGCCCGACCGCTAGAGGATTCTTCAGGGGTTGTCACCATATCCAATGACAGAAACCTTGTAGTACTAAATGGAAAAAAGCAAGCTGTTTGGTCATCAAATGTCTCAAATATTGAGTCCAATACAACTGTGCAACTTCAAAATACTGGAAACATTGTCTTGCTGGATAGCCTCACAGGCAAGACAATTTGGGAGAGTTTCAAACAACCCACTGACACATTCCTGCCAAACATGATAATCAGCAGCAACCAAGTGACGGGGAAGAAAGACAAAAAGACTTCATGGAAAAACCCTTCTGATCCGGCCGTTGGAATCTTCTCCGCCAGCCTCGAACGTCTAAGTCTTCCTGAAGTGTTTGTCTGGAATCAAACACAGCCGTATTGGCGCTCGGGTCCATGGAACGGTCAGGTTTTTATTGGTTTGCCAAGGATGTATACTTCTGCATATCTGAATGGATTCAGTTTAGCAAGGGAAGATGATGGAACTGTCAGTATGGTCTATAGTTTGCCAAATCATTCTTTCTTTGGAACCATGGCCTTGAGTTCAGAAGGCAGGCTAGTTTACAGCTCCTGGATGAACAGACGTCAAGTTGGGAAGCGGGTCATTTACTACAGTAACTGTGATATTTATGGCTTCTGCGGCGCTTATGGAAGTTGTGATCCCGATAAGGTGCCAATATGCAGCTGTTTGAGAGGGTTTGAGCCGAAAAACCGCGAGGAATGGGATACGCAAAACTGGACAAGTGGATGTGTGAGAAAGGAAGCACTCAAGTGCGAGAGGAGTGAAGCCAGCACAGGAGACGGGTTTGAGAAATTGCAGATGTCTAAGGTGCCAGATTTTGCACTCCAATCATCTGTTTCTATTGATACATGCAGAACAGAGTGCCTGAACAAATGCTCCTGTACAGCATATGCATATGATGCTGGCATTGGCTGTATGTCTTGGAAGGGCGAGTTAATTGACATCGTAAGGTTCTCAAGTGGAGGACTCGATCTTTACATCCGCCAAGCTCCTTCAGAACTCAGTAATTATTGTCCCTTTTCTTTCCTCCGTCAATTCATTGTGTTGATTTTGGTTGGTGTCCCTGATATCAGCAAGAACGGAAAGATCACCATCATTGGTGCTGAGCATAAGGGAAAACCATCCAGAAAAAAGAATTGCAGGTTTGAGTGGAGAGCTGGAACAAATCCAGCCAAAAAGTCAGTTTTAGATTGGCAGAAAAGATTTAATATAATTGAAGGAGTCTCAAGAGCCCTGAATCCAAAAATATCAGATTTTGGAATGGCCAAAATCTTTGGGGGCAGCGAAGATGAGGCCAATACTAGAAGGGTTGTTGGAACATATGGCTACATGTCTCCTGAATATGCGATGCAAGGACTATTTTCAGAGAAATCAGATGTGTTTAGTTATGGAGTTTTTCTGTTAGAGATCGTTAGTGGCAGAAAAAATTCAAGTTTTGGAAACGAAGAGGAGTCACTGAGCCTCTTAGGATATGCATGGAAACTATGGAACGAAGGGGAGATTGAATCTCTGATTGATCCAGAAATATTTAATCCAGAGAATGTTGAACACGTATTGAGATGCATACACATTGGACTTCTTTGTGTGCAAGAATTAGCGAAGGAGAGGCCTACTATGGCCATTGTGTTGTCAATGCTAAACAGTGAGATTGTTAATTTTCCTCCTCCTCGACAACCAGCGTTCATCCAAAGACACACCGAGTTAGAAGGAGAATCGTCTCAGCGGAGTCACGAATCAAATTCCATCAACAGTGTCACTGTAACAAGCGTGCATGGCAGATAG


Promoter Sequence:
>Vu_23851::LG5:69170418-69172418(+)
TTCAACTTGACGGATGCAAACCACCTCTATGCAAACTTCGATTTCACTATAAGATCATACAACCCAAATTCTAGAGTCTCCATATACTATGACAGTGTCGAGGTGTCAGTGCGTTATGAGGACCAAACTCTTGCCACCAATGCTGTTCAGCCATTCTTCCAGTCACATAAAAATGTCACCAGGCTGCACGTGGGCCTGACGGCCCAAACAGTGGCCCTGTATGAGTCCGTGCCTAAGGACCTTAAGCTTGAGAAATCCTCAGGGGATATTGAGTTAGATGTGTTGGTGAGGGCAAGGATAAGGTTCAAAGTTGGGTCGTGGAAATCCAAGCATCGAGTTTTGAGGATATTTTGTTCTCCTGTCTTGCTGCATTTCTCTAAAGCCAAGAGTTTCCAAAGGGTCCCTTGTGAAGTAGAACTCTAAACAACCAAATCCTTTTCGATCTATTAATTATGATTTGTTTTCTACTTTTTCTGTCCTTCTTACTGCCTCATTGCTAATTGATGTTATCATTCTTTGTCAGTGTTTTTGTATTTTTTTTGTCTTGGCTTGTTAATTGGTTTTGGTTTTCCTGTATGTTGAAGAAATGGTTAAAAAAGGGAAAATTGGCTGTAATTCATCCAATTGATGCAAATGTTGTAACTTGTGAGCATTGCCTGTGTCGTCCTTCAAAGTTTATACTATTATTAATGGCGTACTGCCAGATGAGACTTTGACCACATTGGATTTCTGCTTTTGTCTATATTTCCATTTTCATTTTCATTTTTTTTAATGCAACGGTGAAATTGGATTAAAAGAAAGTATTATTTTATTTGCAGAATTTAACTTTTGATCAATGCTTATGCTTATGTTACTAATATTTAGTTGAGAAAGTAGATCCTCCTATGGTGAGGTTTGCTTTTTCTTTGGGATAATGCTCCCATTAACTTTTGGTCAATCCATATGTTACTGAGCTTTAGTGGAGAAATTGATCCTCCTATGGCGAGGTTTGCTTTTCCGTGGGGACAAATTCAAATACAGTGTTTGAGTGTGTGAGTGAAGCATTAAATGTAAGCAGTTAGTCCTACGTTCTTTTGAGTGGATATGAGGAGTGGATTTGAGGAGATTTGAAGATAAATTTTTTTATCATTTATTTGAGTGAATTTGGAGGTAAATGAAAATAAATTTGGAAATTAATCTTTTTAATTTGTTACGTCAATACAATTCTATATTAATTCTCACAAATTTTATTTCCAAATTCACTCTCATTTACCTCCAAATTCACTCAAATAAACGACAAAAAAATTTATTTTCAAATCCTCTCAAATTCACTCCCTCAAATCCACTCAAAGGAAGAGGACTACTGGTCAGAATCTTGAGGTACGACTTCTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATTCCAACTCCAAACTTACTTTTCTTCAAAACGATTTAGCTCCATCAATCATCACACCAAAATACATATACACATTCACAGTACCTTTCTATTACCCAAATTCCAGGTAACTGCAACTAGGTATATTTCTTTTTACTTTTTTCCTAAAAATGTAAATAATTGTTACTTTTTAGAGTTTAATTACGTTTTAAATACACTATTTGCAATTAAAGCTTTTGTAAGTATATAGGCTACTTCTTTTGACAAAAGTTCTCTTTTAATGAGAATTTAAATGAATTTAAGTTTCATATTAATTATAAATAAAAAAGTTAAAGAACTTATAATGAGTGTTAAAGAACGTATAATGAGAAAGATTCAAAAGTTTAAATGTAAATTTTGACTTAAATTTCATCACAAATTACATTTAATAAAAAAATAAAATAAGATTCATTAAAATTATTCAAAATACTGTATGTTTAAAAGTTAGTTAACTCTAATTGTCTTATAGGTCTAAAATTTATTCACAAATGGTGCATGAATATCAAGAGTGCATGATACACTGGCAATTGGTACAGGTTATGCGATTCGTAAGAAACA


Gene Sequence:
>Vu_23851(+)
ATGTTACCCGCTTTTCTCATTCTGTTGTCGAACTTGTACATGAGTTTTGGAGCTGGCTTAGACACCATTACAGTGTCTCAATTGATGTCAGACCCTGAAACCTTGACCTCTAATGACGGCGCATTCAAGCTAGGATTCTTCAGCCCTGCAAACACAACAAATCGGTATGTAGGGGTTTGGTATCTCACTGAATCCAATGTCATATGGGTGGCCAACAGAGCCCGACCGCTAGAGGATTCTTCAGGGGTTGTCACCATATCCAATGACAGAAACCTTGTAGTACTAAATGGAAAAAAGCAAGCTGTTTGGTCATCAAATGTCTCAAATATTGAGTCCAATACAACTGTGCAACTTCAAAATACTGGAAACATTGTCTTGCTGGATAGCCTCACAGGCAAGACAATTTGGGAGAGTTTCAAACAACCCACTGACACATTCCTGCCAAACATGATAATCAGCAGCAACCAAGTGACGGGGAAGAAAGACAAAAAGACTTCATGGAAAAACCCTTCTGATCCGGCCGTTGGAATCTTCTCCGCCAGCCTCGAACGTCTAAGTCTTCCTGAAGTGTTTGTCTGGAATCAAACACAGCCGTATTGGCGCTCGGGTCCATGGAACGGTCAGGTTTTTATTGGTTTGCCAAGGATGTATACTTCTGCATATCTGAATGGATTCAGTTTAGCAAGGGAAGATGATGGAACTGTCAGTATGGTCTATAGTTTGCCAAATCATTCTTTCTTTGGAACCATGGCCTTGAGTTCAGAAGGCAGGCTAGTTTACAGCTCCTGGATGAACAGACGTCAAGTTGGGAAGCGGGTCATTTACTACAGTAACTGTGATATTTATGGCTTCTGCGGCGCTTATGGAAGTTGTGATCCCGATAAGGTGCCAATATGCAGCTGTTTGAGAGGGTTTGAGCCGAAAAACCGCGAGGAATGGGATACGCAAAACTGGACAAGTGGATGTGTGAGAAAGGAAGCACTCAAGTGCGAGAGGAGTGAAGCCAGCACAGGAGACGGGTTTGAGAAATTGCAGATGTCTAAGGTGCCAGATTTTGCACTCCAATCATCTGTTTCTATTGATACATGCAGAACAGAGTGCCTGAACAAATGCTCCTGTACAGCATATGCATATGATGCTGGCATTGGCTGTATGTCTTGGAAGGGCGAGTTAATTGACATCGTAAGGTTCTCAAGTGGAGGACTCGATCTTTACATCCGCCAAGCTCCTTCAGAACTCAGTAAGTACATACAAGTTTTGTTTCTCTAATTTGTTTAAAATCAGATCTTTATAAATAATTCATTCAATTTTTAGTCTAATATCCAGATTCTATTGTGGATGTGTTAATTGCTGAACAATACAGATGGGGGGAGAAACATGACATCAATCATTGTAGTTACAGTGATAGTGGGAGCATTTCTTTTTGCTACTTGTGTATATTTTTTATGGAGATGGACTTCTAAGCGTTCTGGTATGTTTGCTTGTTCAGTTATTGTCCCTTTTCTTTCCTCCGTCAATTCATTGTGTTGATTTTGGTTGGTGTCCCTGATATCAGCAAGAACGGAAAGATCACCATCATTGGTGCTGAGCATAAGGGAAAACCATCCAGAAAAAAGAATTGCAGGTTTGAGTGGAGAGCTGGAACAAGTTAAAATCCAGGACGTGCCAGTATTTAATTTTGAAAACATTGCAACTTCAACAAATCACTTCAATTTAGCTAATAAGCTAGGCGAAGGTGGTTTTGGTTCGGTGTACGAGGTAACTGTCATGTGACGTTTGATTTTATCAATACTATGTGCAATCTGAAGTTTTCCTTAACATTTTCTTCTAGGGAGAATTAAAAAATGGGCAAAAAGTAGCAGTAAAACGACTTTCAAGAGCATCTAGGCAGGGGACAGAAGAATTTATAAATGAAGTGACAGTAATTTCAAAACTTCAACACCGTAATCTTGTAAGACTCCTAGGTTGCTGTATTGAAGGAGGGGAGAGGATGTTGATATTTGAGTACATGCCGAATAAGAGTTTGGACTTTTATCTGTTTGGTTAGTCCACCTTTATTTCGACAAATATGAAAAAAATGATTTTGCTTCCTGAAGATTACCTCACTTTCTATTGTTTCTGCAGATCCAGCCAAAAAGTCAGTTTTAGATTGGCAGAAAAGATTTAATATAATTGAAGGAGTCTCAAGAGGTTTGCTTTATCTCCATAGAGATTCTAGACTGAGGATAATACACAGAGACCTGAAGCCAAGTAATATCCTGTTGGATGCAGCCCTGAATCCAAAAATATCAGATTTTGGAATGGCCAAAATCTTTGGGGGCAGCGAAGATGAGGCCAATACTAGAAGGGTTGTTGGAACATAGTGAGTGTTCCTTCTTTTCATTCAAAGTCATATTTTGCCATAAATAACTGCTAACTTCATTTTGAAATTAAAATACAGTGGCTACATGTCTCCTGAATATGCGATGCAAGGACTATTTTCAGAGAAATCAGATGTGTTTAGTTATGGAGTTTTTCTGTTAGAGATCGTTAGTGGCAGAAAAAATTCAAGTTTTGGAAACGAAGAGGAGTCACTGAGCCTCTTAGGATATGTAAGCCTTTTGTTTGGTTGTTTCTTTTGGCACTATTTACAACAAAAAACAATGGTAGAATTTATTTGTGTTTTGCTTGTTAAGGCATGGAAACTATGGAACGAAGGGGAGATTGAATCTCTGATTGATCCAGAAATATTTAATCCAGAGAATGTTGAACACGTATTGAGATGCATACACATTGGACTTCTTTGTGTGCAAGAATTAGCGAAGGAGAGGCCTACTATGGCCATTGTGTTGTCAATGCTAAACAGTGAGATTGTTAATTTTCCTCCTCCTCGACAACCAGCGTTCATCCAAAGACACACCGAGTTAGAAGGAGAATCGTCTCAGCGGAGTCACGAATCAAATTCCATCAACAGTGTCACTGTAACAAGCGTGCATGGCAGATAG

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This project is funded by the Department of Biotechnology
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