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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23799 LG5 68750276 68750924 PREDICTED: disease resistance-like protein CSA1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 68750504 missense_variant p.Phe77Ile
C/T 68750748 intron_variant
C/T 68750756 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23799.1
MQRLPKMMTKIGGPVCDVFINHRGIDTKRNVAGLLYDNLTRIGVRAFLDSMNMKPGDRLFQHIDRGILGCKVGVAVFSPRYCDSYFCLHELALLMESNKRVVPIFYDVKPSQLTVKDNGTCPPADLQRFAFALEDAKNTVGLTFNSLNGDWSELLRNASEAVIMNLLEVKEERKYAKKQR*


CDS Sequence:
>Vu_23799.1
ATGCAGCGTTTACCCAAGATGATGACTAAAATCGGTGGTCCGGTATGCGACGTCTTCATCAACCACCGTGGGATCGACACCAAGAGGAACGTTGCCGGGCTGTTGTACGATAATCTTACGAGGATTGGAGTGAGGGCATTCTTGGACAGCATGAACATGAAACCCGGGGACAGGCTTTTCCAACACATTGATAGAGGCATTCTGGGTTGCAAGGTTGGTGTTGCCGTCTTCTCTCCTCGCTACTGTGACTCCTATTTCTGCCTCCACGAGCTCGCTCTTCTCATGGAGTCCAACAAAAGGGTCGTTCCCATTTTCTACGACGTCAAACCCTCGCAACTTACGGTCAAGGACAACGGAACCTGCCCTCCCGCGGACCTTCAGAGGTTCGCCTTTGCACTTGAAGACGCAAAGAACACCGTGGGATTGACGTTTAATTCTTTGAACGGGGATTGGTCGGAGTTGCTGAGGAATGCTTCGGAAGCGGTGATCATGAACTTGTTGGAGGTAAAGGAAGAAAGGAAGTACGCGAAGAAGCAGCGTTGA


Promoter Sequence:
>Vu_23799::LG5:68748276-68750276(+)
ACACAAATACTTAATACAAAACCACTAACCTAAACTCCTAATAATTGGGACCCGCAACACCTCACCAGCTAGTTAATTGTTATATATATTAATTCAAACTTTAATCGTCCATGAAATTTACAATGATATAAAAAACCAATTCAGTTATTTAGGAAATCACACTGATTTACGACTGTTAACCTAATGCAACTGTGTAATCGGCAACAGCTTTGATGAATCGTCACTTGACCGTTTGAATCGAGTAAAGCTTTGACATTTAAGCTTGTAAAAATCTCACTTTTAAAGAAAGACATTCATGAATTTAATTATTATTTTTTTTGTGTGTGGAAGCGCACAGAAAATGAGATTAAGGAGAAATTTCGAAGGAACTGGAAAGAGATAGAGATGCTGTCTGCTTTCAAAACTTTATTGTTTTTTCAAATACAAACCTTCTTTTTAATTAATTGTTTATAGTTTTTCTGTATCAAAAACCTCCTTATCCATCGCAAATCTTAATTACGTTATATATACATCTTAAAGCGTGCAGTTCATCGTCTTGCTTTCTGATAGCTCTTTGAAAATGGCATTTATTGTCTGAAGTACAATTAAAAACTTTCCAGTTTATAAAAATTCATCATTTTTGTATTTTCAGTAACAACAACCAAACTTTAGGTAGAGTGGGAACGAGATAAAGTTTATTATATTTGAATAATAAAAGTAGAGATAATAAAACATCGAGTAAAGTATAATAAGTTGATATTATAATAGTGTTAACAAAAACTGACGTTGATTAATTGGGAGCAGCATCCTCATATATGTCACCTTGGTCCAACGGACATACGTCCGTTCACACGTATTTTAAAGCCATCTACGAAATAATAATACATTGTGCTTAATAACATAATTAACCTCAGTACCTAAATGCGTATTTTTTTATAATGAACTTCAAACTTAAATAAATACAAAACAACCGAGTCCTACGTGTCGTGGTTTGATCCCAAATATGAATACTTGACCACAGTAGTGTTCGACTGCCACATTATATTCATTTCAAACGTTCTGCTGTCAGTTAGAAATAAAAGATGTGAAATTAAGTTAACACCCATTTATATATTTACAGACTTCTTGTATGGATTATTTCAAGACAATTCTTTGATACTCTATAGTATCACGACTACAGAATGTAAAACCAAAGTTAAGTAATGTTTATACGCACACCAAGAAATTAATTACTCTTTTTACCTTTTAATAATAAAAGTTTAACATATAGAACTTAGAGGGATATTTTTTTATTCTAACGTATAGGAATGGTATACCCAAATAAAACTTTAACACAGTGATGATGAAATTGTTTTGGATTACATTTATTCTATTTCTTTTAAAAAATAAACATATATAAAAACTATTTGCCGTGATTACAATGTAATAACTTTTTCATAAAATTTTATATCTTACACTTTTAACCAGTTAATAAAATAGAAATTAATAATTATACTTACTTGATAAAGGAGTAACTAATTTTTGTGATTAATTAAAAGGGTCCTCGAGGAAACAACCCCTAAATTTCCCTCAAATTAGTGTAAAGGAATGACCACGTCAGCGAATCAGTGTAGCCGATCGCCGATAAACAGAACACGTATTTTTTTTTTATACAATAATAAAGAGAGAAAAACTACGGATACGTACTTACGTGTTTGAAGGAACAATTAGTTCCTAATATGGATTCCCGAGGGTCCGAAAATTCAAATGCTTTTACTCTTTTTGTTCAATTACCTAGTATTTTCCATTAGTCCAACATAAGCCCTTTTCTCCCAAATTTACACACACACTCTCTCGATCGATATATGTATATATAGACTTTACACCCATCTTTGTCTCTCAGATCTTCCCTGAGTTAAAATCTCTCCCCACAAAGTACACAACAAATTAAAGTCTGTAGCAAAGAAAGAAAAGTTTTGTAGCAAGAAAACCCAACAAAACAAATTATAATCGGTAATTAAGTTAGGCTGAGGAAGGAGCCA


Gene Sequence:
>Vu_23799(+)
ATGCAGCGTTTACCCAAGATGATGACTAAAATCGGTGGTCCGGTATGCGACGTCTTCATCAACCACCGTGGGATCGACACCAAGAGGAACGTTGCCGGGCTGTTGTACGATAATCTTACGAGGATTGGAGTGAGGGCATTCTTGGACAGCATGAACATGAAACCCGGGGACAGGCTTTTCCAACACATTGATAGAGGCATTCTGGGTTGCAAGGTTGGTGTTGCCGTCTTCTCTCCTCGCTACTGTGACTCCTATTTCTGCCTCCACGAGCTCGCTCTTCTCATGGAGTCCAACAAAAGGGTCGTTCCCATTTTCTACGACGTCAAACCCTCGCAACTTACGGTCAAGGACAACGGAACCTGCCCTCCCGCGGACCTTCAGAGGTTCGCCTTTGCACTTGAAGACGCAAAGAACACCGTGGGATTGACGTTTAATTCTTTGAACGGGTAAATATACATACATTCACACATCTCTCTTTTTCCTCTTTGGGTTAATGGGTCATGATTTATATTACATGAAGTTGGGTTTTGATTGATTTGGTTTTGTTTTCAGGGATTGGTCGGAGTTGCTGAGGAATGCTTCGGAAGCGGTGATCATGAACTTGTTGGAGGTAAAGGAAGAAAGGAAGTACGCGAAGAAGCAGCGTTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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