Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23758	LG5	68410556	68412613	PREDICTED: L-type lectin-domain containing receptor kinase VII.1-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, defense response to bacterium, protein phosphorylation, defense response to bacterium, defense response to oomycetes, defense response to oomycetes, defense response to oomycetes, defense response to bacterium, protein phosphorylation
Cellular Component	is active in	plasma membrane
Cellular Component	located in	chloroplast, chloroplast, plasma membrane
Molecular Function	enables	kinase activity, protein kinase activity, transmembrane receptor protein serine/threonine kinase activity, protein kinase activity, transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, protein kinase activity, transmembrane receptor protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
T/C	68410556	stop_lost&splice_region_variant	p.Ter686Trpext*?
C/T	68410639	missense_variant	p.Ala659Thr
G/T	68410656	missense_variant	p.Ser653Tyr
G/A	68410718	synonymous_variant	p.Ile632Ile
C/A	68410885	missense_variant	p.Ala577Ser
T/C	68410979	synonymous_variant	p.Leu545Leu
G/A	68411576	synonymous_variant	p.Ile346Ile
T/A	68411646	missense_variant	p.Glu323Val
G/C	68411679	missense_variant	p.Ala312Gly
C/T	68411680	missense_variant	p.Ala312Thr
C/T	68411755	missense_variant	p.Val287Ile
A/T	68411825	missense_variant	p.Asn263Lys
T/A	68411965	missense_variant	p.Arg217Trp
C/A	68411969	synonymous_variant	p.Val215Val
C/A	68411978	missense_variant	p.Met212Ile
T/A	68411980	missense_variant	p.Met212Leu
G/A	68411982	missense_variant	p.Thr211Ile
C/G	68411990	missense_variant	p.Met208Ile
C/T	68412110	synonymous_variant	p.Lys168Lys
A/T	68412350	synonymous_variant	p.Ser88Ser
G/A	68412392	synonymous_variant	p.Thr74Thr
G/A	68412501	missense_variant	p.Ser38Phe
A/G	68412584	synonymous_variant	p.His10His
C/A	68412609	missense_variant	p.Ser2Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23758.1

MSRHKLKHAHPLAQLLMILLFFNSTCAIDFVFNGFNSSEVLLFGNATIDSRILTLTHHQTFSIGRALYKEKIPTKKPNSSFVYPFSTSFIFAMAPYEDTLPGHGLVFIFTPVTGIQGTSSAQHLGLFNLTNNGNSNNHVLGVEFDVFMNQEFDDINANHVGIDINSLKSSVSNDSGYWQDDGDRSFKELTLNSGENYQVWIDYEDSRMNVTMAPVGRKRPSRPLLNVSLNLSEVFEDEMFVGFTSATGQLVESHKILGWSFSNENISLSDELITTGLPSFVLPKDSVFKSKGFVAGFTVGAFLVICVLVLLALVLIERKRLRERKRQEMEDWELEFWPHRMVYEEIEAATKGFSEENVIGVGGNGKVYKGVLRGGVEIAVKRISHENDGLREFLAEVSSLGRLKQRNLVGLRGWCKKDVGSFLLVYDYMENGSLDKRVFDCDERKMLSYEDRIRIIKDVAFAVLYLHEGWEAKVLHRDIKASNVLLDKDMNGRLGDFGLARMHSHGQVASTTKLVGTVGYMAPEVFKTGRASTQTDVYMFGILILEVLCGRRPLEEGKSPLVEWVWQLMVQGQLVFALDERLRTKGEFSEQEVERLMHLGLLCAYPEPKVRPTMRQVMNVLEGKNDEDDSEIENMDSYLLQQLKSRDILSEYSQYFNYASHPTFQDIGNSSSMSLTWSESVVEGR*

CDS Sequence:
>Vu_23758.1

ATGAGCAGACACAAGCTGAAACACGCACATCCTCTTGCACAACTTCTTATGATTCTTCTCTTTTTCAACTCCACATGTGCCATTGATTTCGTCTTCAACGGCTTCAACTCCTCTGAAGTATTGCTCTTTGGAAACGCCACCATCGATTCTCGAATTCTAACACTAACACATCATCAAACTTTCTCCATCGGTCGTGCCTTGTACAAGGAAAAAATTCCCACCAAGAAACCAAACTCTTCTTTTGTCTACCCTTTCTCCACCTCTTTCATATTTGCCATGGCACCTTATGAAGACACTCTTCCGGGACATGGCTTGGTTTTCATCTTTACACCTGTCACGGGCATCCAAGGCACAAGTTCTGCACAACACCTTGGTCTGTTCAACCTCACCAACAACGGAAACTCAAACAACCATGTGCTTGGTGTCGAGTTCGATGTGTTCATGAACCAAGAGTTCGATGACATCAACGCCAATCATGTGGGGATTGACATAAACTCTCTCAAGTCTTCTGTTTCCAATGATTCTGGATATTGGCAAGATGACGGTGACAGGTCTTTTAAGGAATTGACGCTTAACAGCGGTGAGAATTACCAAGTTTGGATTGACTACGAAGATTCTAGGATGAATGTTACCATGGCACCGGTGGGTAGGAAAAGGCCTAGTAGGCCTTTGTTGAATGTTTCTCTCAACTTATCTGAGGTTTTTGAGGATGAAATGTTTGTTGGGTTTACTAGTGCCACTGGTCAATTAGTTGAGAGTCACAAGATCTTGGGGTGGAGTTTCAGCAATGAGAATATTTCGTTGAGTGATGAACTTATTACTACCGGACTACCGTCTTTTGTTCTTCCAAAGGACTCAGTTTTTAAGTCCAAGGGGTTTGTTGCAGGTTTTACTGTTGGAGCTTTCTTAGTTATTTGTGTCTTGGTTTTGTTGGCACTGGTTTTGATTGAGAGGAAGCGTTTGAGAGAAAGGAAGAGGCAGGAAATGGAAGATTGGGAATTGGAGTTTTGGCCACACAGAATGGTGTATGAGGAAATCGAGGCAGCAACAAAGGGGTTCTCTGAGGAGAATGTGATTGGGGTTGGAGGGAATGGGAAAGTCTACAAGGGTGTTCTAAGAGGAGGGGTGGAGATTGCTGTGAAGCGCATTTCTCATGAAAACGATGGCCTGCGAGAATTTCTTGCTGAAGTTTCAAGCCTTGGGAGACTGAAGCAAAGGAATTTGGTGGGATTGAGAGGTTGGTGCAAGAAAGATGTTGGGAGTTTCTTGTTAGTCTACGACTACATGGAAAATGGTAGCTTGGACAAGAGGGTGTTTGATTGTGATGAGAGGAAGATGTTGAGTTATGAGGATAGGATAAGGATTATCAAAGATGTGGCTTTTGCAGTTTTGTACTTGCACGAGGGGTGGGAAGCTAAGGTTCTGCATAGGGACATCAAGGCAAGCAATGTTTTGCTTGATAAGGATATGAATGGAAGGCTAGGGGATTTTGGGTTAGCCAGAATGCACAGCCATGGTCAAGTTGCTAGCACCACAAAATTGGTTGGAACAGTGGGGTACATGGCTCCCGAAGTGTTCAAGACTGGAAGAGCTTCCACTCAGACAGATGTTTACATGTTTGGCATCTTGATTTTAGAGGTTTTGTGTGGAAGGAGACCTCTAGAAGAAGGTAAGTCACCTTTGGTGGAGTGGGTTTGGCAACTAATGGTACAAGGGCAACTTGTTTTTGCACTTGATGAAAGATTAAGGACTAAGGGAGAGTTCAGTGAGCAAGAAGTGGAGAGGTTAATGCATTTGGGTTTGCTGTGTGCCTACCCTGAACCAAAGGTCAGGCCCACAATGAGACAAGTGATGAATGTTCTGGAGGGGAAGAACGATGAAGATGATTCAGAAATCGAGAATATGGATAGTTATTTGCTCCAACAATTGAAATCAAGGGATATATTGTCTGAGTATTCCCAATACTTTAATTATGCCTCACACCCAACTTTTCAAGATATTGGTAACTCTTCCTCAATGTCTCTCACTTGGTCCGAATCTGTGGTTGAGGGTAGGTGA

Promoter Sequence:
>Vu_23758::LG5:68412613-68414613(-)

GCATATTGAAAGGGGGAAAATAAAATTATTAATTAATTAATTAAATAACTTATAATGACATTTAATAATTATTATCCCTTTAACAGAGAGGAAATAGAACAGAGGAGAGAAATGTGAGGGTATGCAAAATTTGAGAAACCGTGGTTAGTGTGACAGAATTCCGGTGACTAGTTCGTATTTGCTGTTTTAATAAATCCTTATAAACAAATACAATAGAGTTATTTCTAAGTTATTTTACTGTTATTAATAACTGTGTTATAGCAACAAATAATACGGTGAATTATACCTAAAAGCATATTTAATCATATTTTAATATTTTGTTATCATCGATATAAAATTTATCTTACATTCAAAAATTATTTTCTGAAATGATATTTGAAATAATTTAGATGAAAAAATAAATAAAAGTGGAAGCTACAGATGTCTTAAACAGAACATCAAGCAGGAGTATTCTCATTTGAATATCACTTTCTCATCCCAAAAGCAAGAACTTTCTTAAAAAGTAGCCACACTGGAAAATTAATTTCCTAGGTCGTAAAGAATATAAGAATACATGTCAAAGTTTGTAACAAATATGAGATTATTATATTTCAATGAAATAATTTTTAATTCCTGAAACAAACATCATCACATTATGCATAATATATATAGTAATAATAAAAAATCACTTTTTCTTTTATTTTATTATTCTTACGTGGTATAGTGTGGCATAGTGAGAAGATGACAGCCACATTGAAGGAGACATTCATAAATTGATAAATTGGCATGAATAGGAGAGAGAGAAGAATCGCCAACAACTTGTTTGCTCAATAGTACAAATAATAGACACTTTTATTAATTTAGCTCCAATATTTTTATTTTTAACTTTTAATACTTTCAATTAATTAAAAAATATTATTTATATAATGTGTAAAAAAATTAATTGACTATTTTAGCTGCCGACTTCCTTAAGCTTTATCCACATGTCATGCCACAAACTTTCAAAGGGATAAAAGATATTCGTTAGTTCTCACTGTAAATGTCCTCACGCTGCTCTTCCTTCTCAGAGTGCATTTTAATGACCTAAGAAAAATAATACGAAAAATATTATTCTATTTCACTAAAAAAAGGTGAGATTTAAAGAAAATGGTTTCATGTGATTTGTAGGTGAACTTGTCTACGCCACAATATAAATAAATATGTTTTAACGTGTTATTTATACATAATTAATTACAAAACAATGATAATTGATTATGCGTGAGGATAATTAAACTATGGATATTTTTATCACAATAATAATTTTCTTTGAATAAATAAATAATTTATAATATTGAATTAAATTATTTTATCTTTTGTTTATGTCAATTCCTTCCATTTTTTTAATATATTTTTTTCCTTCTCTATTCTCGCATTTTCTTATTTATGAGTTAAATCTATAAATACCTTTAAAAAAACAAACCTTTTTCTTTATAATCAGATTCTTCTTATTTATAAAAACGTTTTAATTTTAATGTTAAACCTAATTCCTTCAAAGAATCAACCCTCTTATTTTTATCATGGGAGATGAAGTAGGGATATGGTTGTCTTTCATTTGATTTGGTCTAAAGAAGAAAATTTGGATTACTTCTTCAGTTTTAACACCGATTCAGTCGTACGGTTTGAAATATATGAATACGGAGTAATGATATATGTCTTAAGAAGTAGAAGAATTTGGATTTAGAATTCTTGGTTTGGGATCTTTTCTTTCTTTATTGTCATTTGTCAAAATTAATAACATTAATTTTAATTAACTACTAAATGTTGCGATCAATGAGTTCAAATAGTTGACTACAGAATTTTCCAACGCCACCCTGTTCGTCTAATCTAATCCCATGTTTTCATACATTCTCAAGGTGCTGTCTTTCTCTCTCTCTCTTCTCTCTCTCACAATCACACCTGCTTCAGTTTAAGTGTTCAAAACTTAATCACTCTTCTGTCTTTCCATTCATGACACGAGCCTGTGCTTCTTCATGCTAAAAAAC

Gene Sequence:

>Vu_23758(-)