Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23755	LG5	68384633	68387498	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	68384994	synonymous_variant	p.Asp422Asp
A/G	68385607	synonymous_variant	p.His249His
G/A	68385772	intron_variant
T/A	68385840	intron_variant
T/C	68385848	intron_variant
G/A	68386132	synonymous_variant	p.Tyr175Tyr
C/A,*	68386163	missense_variant	p.Gly165Val
A/G	68386183	synonymous_variant	p.Phe158Phe
G/C	68386228	synonymous_variant	p.Val143Val
C/T	68386369	synonymous_variant	p.Leu96Leu
T/C	68386374	missense_variant	p.Lys95Glu
C/T	68386420	synonymous_variant	p.Arg79Arg
T/A	68386576	missense_variant	p.Leu27Phe
C/T	68386650	missense_variant	p.Glu3Lys
T/A	68386704	5_prime_UTR_premature_start_codon_gain_variant
C/G	68386961	splice_region_variant&intron_variant
C/T	68387346	5_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23755.2

MGEDSNSWIRRTKFSHTVCHRLDSSRLGHVPIGIQSEQKSSPASEVQRHPITNKQRSSSPLPVTFLSEAFREARHDQKRFSTPNPQRENRTTGKKLNKDSPETKESSSKFPSRSPSKKVKSKHSKDAAWTKFLDNGGSKITAVETAEEWNIDMSQLFFGLKFAHGAHSRLYHGVYKDESVAVKLIMEPEDDESGDLASRLEKQFVREVTLLSRLHHQNVIKFSAACRKPPVYCIITEYLSEGSLRAYLHKLEHQTISLQKLLTFALDIARGMEYIHSQGVIHRDLKPENILIGEGCRLKIADFGIACEEASCDILADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILSEMLTGTIPYEDMNPIQAAFAVVNKNSRPVIPSDCPAAMRALVEQCWSLQPDKRPEFWQIVKILEQFQSSLARDGTLTLLPNPCWDNKKGLLHWIQKLGPVHQNSGPVPKPKFT*

>Vu_23755.1

CDS Sequence:
>Vu_23755.2

ATGGGCGAAGATAGTAATTCTTGGATTAGGAGGACAAAGTTTTCACACACAGTGTGCCATCGTTTGGATTCATCTAGATTAGGTCATGTTCCTATCGGCATTCAGTCAGAGCAAAAATCAAGCCCTGCCTCAGAGGTTCAGAGGCACCCCATAACGAACAAGCAGAGATCTTCGTCACCATTGCCCGTGACTTTTCTTTCTGAGGCCTTCAGGGAAGCTAGACATGATCAGAAGAGGTTCTCCACACCGAATCCCCAGAGAGAAAATAGGACTACGGGGAAGAAGTTGAACAAGGATTCTCCGGAGACTAAGGAATCAAGTTCAAAGTTTCCTTCCCGTAGTCCAAGTAAGAAGGTGAAGTCAAAGCACAGCAAGGATGCAGCATGGACCAAGTTTTTGGATAATGGTGGAAGCAAGATTACTGCTGTCGAAACAGCCGAAGAGTGGAATATTGACATGTCTCAGCTGTTTTTTGGCCTAAAGTTTGCTCATGGAGCACATAGCCGACTTTACCATGGTGTATACAAGGATGAATCAGTTGCAGTTAAACTCATTATGGAACCCGAAGACGACGAAAGTGGAGATTTGGCTTCTCGATTAGAAAAACAGTTCGTTAGAGAAGTTACTCTCTTATCTCGTCTTCACCATCAAAATGTTATAAAGTTCTCAGCAGCGTGCAGAAAGCCACCTGTTTATTGTATCATCACAGAATATCTTTCGGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGCACCAAACTATTTCTCTACAAAAGCTTTTAACTTTTGCCCTTGACATTGCTCGGGGTATGGAATATATACATTCTCAAGGTGTGATTCATCGAGACCTTAAGCCAGAGAATATCCTCATAGGCGAAGGTTGTCGCCTTAAAATTGCTGATTTTGGCATTGCATGCGAGGAAGCCTCTTGTGACATACTGGCCGATGACCCAGGCACATACCGTTGGATGGCACCCGAGATGATCAAACGTAAATCCTATGGAAGAAAGGTTGATGTGTACAGTTTTGGGCTTATCTTATCGGAGATGTTGACTGGAACTATTCCATACGAGGATATGAATCCAATACAGGCTGCTTTTGCCGTTGTAAACAAGAATTCAAGGCCAGTTATTCCATCAGACTGTCCAGCTGCTATGAGAGCTTTGGTTGAGCAGTGTTGGAGCTTGCAACCAGATAAGAGGCCTGAGTTCTGGCAGATTGTGAAGATATTAGAGCAATTTCAATCTTCACTTGCTCGTGATGGAACCCTTACTCTGCTGCCGAACCCTTGTTGGGATAATAAAAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGCCCTGTGCATCAAAATAGTGGCCCTGTGCCTAAACCCAAGTTCACATGA

>Vu_23755.1

Promoter Sequence:
>Vu_23755::LG5:68387498-68389498(-)

AAACCTATGACCAAATTGAAAAAATTTAACAATAACCAAAGTATTTAAACCTATTAATAGAAATACGGGACCAAATATTTACTGCTAAAATAGAAAAGACCCACCATAGCTCAAAATATTTATCTGTTTATTCGGCTCAAGATTCAATCAATATCACCCTCCCAAATTTGGCAACTTCTTGCTGTACTTCCGTAGTATCAGTTTGTACTTCCATAAAATTTTGTATTTCAAATTATTAAATTTCGAATATATTTTTCATTTTATATTTTAAAATGTATAATTTAAAATATAATTTTTTGTATTTCAAAATACACAAAAATCATAATTACGTATTTCAAATAAAAATGTACTATGAATTATATGATTTAAAATATATTTTTATTTTTCTATTTAAAATATAAAATCTAAAATACAAACAATTATATTGTAAATTATACATTTGAGAATACGTAGATTTGTGAGACTGCAATAAGAAGCTGCCCCAAATTTTGGTGGGTTTTGTAAGCCAGGCCCAACTTCACAGTATTTCTTTGTTTTACAAATTGCACCAACCAAATAGAGCTGATCTTCTTATTATTTTTTATGACCTGACAAATGAAATAAATAAAAAATTCATTGAAATACAAAAAACAAAAATATGTTATAGATTACACATCTTGGAATACCAATATTTGTGGGTCTGCAGCAAGAATCTGCCCCAAATTTGTTTGGGCTTTTGTATGCAAGGCCCACCTACAGAGTTTTTTTTTTTTCATTTTGTATCAACCAAACAAAGGATGGACTCCTTTATTATTTCTTTTTATGGTCAGAAAAACGAAATCAATAAAAAAAAATCAATCAAACATGTCCTCATTGATTCTTTCATATTTGCAGTTGTATCCTCTTGAACTAAATCAATTTAAAGTGACCCAGTCTCTGTATAAAATATATAAAATGTTTTAAATGAATACTGAATATATAAATCAAATTCTAGATTTACAACAATCATATTATATTACAATGCAAGGTATGTTTATCCGCTGACATTTAAAAAAAAGATATTAAAATTCACTATGTAAAAAAAAAAACTGAAAAGAAGCGTTTTATTAAATAAAAACTATTAAAATTATTCTTGTTAACATTTTCCTAAAAATAATCATTGTAATCTATACAACTTGATATAAAAATCTGATAACTCTTTATGAATTTAGTTAATAACAAATTTCTTTATACTGTTTTTAATGAATCTATTATGGTAACGTATTCCATTCAAAGCAATTTATTGATGCATGAATTTAATATGAGTTGGGCCTGTGAATATGTATTTCCTAAACTGAAATGAAAGAGAGAATCAATGAGATATTATTTTTTGGTTGGAACTCGAAAGCAAACTGAAATGGTGCATGATGCACGATGCAGATGCAGTCTAAGGCATCCGTGCGAACCGTACCTTAAAACCTTTGCTCCATTAGATGCCTTAAGTATACTAAAAAGTAGATGGGAGTGTGAATTTAGCAACAGTAACTGCGAAGTGTTGCTAAAAATAAATAGGAAAGGCTTACACGTAACCACGCATCCGTACGAATTCCCTTAACAGTGACACTTGGATTCCTCCACTCACCACATTTCAACCATTTTTTCTCTCTTTCTCTTCTCCATCATTCATTCTCATTCATTCCAAAACCAAAACAGAACAAACAAATTTATGTCCCTCTCAGTCTTCTTTGACTTTCTCCTGTGGTCCCCACACCCCACCACCCCACTATAACCTAACCCATCACACTATGTCTCTCCACACATGCATCACTGTTCATATTTTCAGAACACATCTATTCAAAACCATTCTTATTCATGAAATGGTTGATGTTTTTGTGTTATGTAAAAAACCAAATAATTATAAAATTATGATGTCATAATTCCTCGACGGTGACAAGGAGGAGATGAATGAGGTTTGGAATTGTAAAACCGACAGACACACACTACAACCTTGAAATGAAATCTATGGTCTATTTTCTCCGGGT

Gene Sequence:

>Vu_23755(-)

ATCTTACGTAACGTATGACAAGATCCTTCTATGACCCTACTAAATATTACTTCTAATTTCTAAAATTGAAAATTTAACGAAAAAAAAAGAAAGATATGCTCTGTAGTTTACACCTGTCTTTCTCTTTCCTTACGGAAAAAAAAATGGTATTAGGTGCACCATTTCTCTCCATCCTTGCAAACGTAAAAAGGCAAACAGAAACTCCATTTCCGCTTTAGCACCTATTTCATCTTCTCACCTCGGTGAAAGCCCTTCAGGTAATGCATGCTTTATTATTATTCTATATCTTTCTTTTGCTTAAACTTTTCTTCTTTTTCTTTTTCTTAAATCTCGTTTACCCTTATCTGCTATTAGTTTCATATCGCTGTGATTCTTTTACGGATTTTCCCTTGGGGAGGTAATCAAGGCTGTTTCTTTGTTATCAACACAAATGACTTATTTTCTTTTACTTTTTGTATATTTCATGCTTTCTGTGATCATTTTACCTTTTTCTTGGATGGATGGATTGATTTGTTGAGATATTTGTGTGGATTTTTTGCAGGCTTTTACGGAAGGTGGGTTTTGGCTAAAGGGGGTGCTTGGATGTTGAGTTTATGGATGCTCATGTTCTTTTGTTGAATAATATCTTGTTTTGCCTCTGTCTTCAGCTTTTAATGGAACCAATCCTGCCCTCTTTTTTTCAAATGTAAAGATCGGGTTTTTGGTTATTCCTCCCCTCATTCTGGTCAAAGGGTCTCAACCTGGTTTTGAGATTTCTCAGGTAGGGGTGGAGGAGTTTCAGTTTTGTAAGTACAAGATCTTGATAAAAAAGGTTTTTGTAGAAAGGAAAAGTTGAGAATAAGATGGGCGAAGATAGTAATTCTTGGATTAGGAGGACAAAGTTTTCACACACAGTGTGCCATCGTTTGGATTCATCTAGATTAGGTCATGTTCCTATCGGCATTCAGTCAGAGCAAAAATCAAGCCCTGCCTCAGAGGTTCAGAGGCACCCCATAACGAACAAGCAGAGATCTTCGTCACCATTGCCCGTGACTTTTCTTTCTGAGGCCTTCAGGGAAGCTAGACATGATCAGAAGAGGTTCTCCACACCGAATCCCCAGAGAGAAAATAGGACTACGGGGAAGAAGTTGAACAAGGATTCTCCGGAGACTAAGGAATCAAGTTCAAAGTTTCCTTCCCGTAGTCCAAGTAAGAAGGTGAAGTCAAAGCACAGCAAGGATGCAGCATGGACCAAGTTTTTGGATAATGGTGGAAGCAAGATTACTGCTGTCGAAACAGCCGAAGAGTGGAATATTGACATGTCTCAGCTGTTTTTTGGCCTAAAGTTTGCTCATGGAGCACATAGCCGACTTTACCATGGTGTATACAAGGATGAATCAGTTGCAGTTAAACTCATTATGGAACCCGAAGACGACGAAAGTGGAGATTTGGCTTCTCGATTAGAAAAACAGTTCGTTAGAGAAGTTACTCTCTTATCTCGTCTTCACCATCAAAATGTTATAAAGGTGATGGCATTTTGTTTCTTATTTTGTATATGCTATTTACAAAGTATAAATGCATAGTCCTGATGCTGTCTTCAATGCCTTTTGAGTAAGGTAAGTGTATCTGTTGTTCTGCTCTGATTACCATGTTCAATTTGAACCTTTAATCATGTTGAAATATCAAGTTTTAAAAGTATGCATACTACCAGTTCATATTCATCTTTTCTCATTTATTTGGGTTTAATCGTGTTCATAGTATGATGTCGGGATTATTTACGAGGATGCTGATCTGTACCTGTTTCCTGGTGTGTTTTGATGTGAGTACAGTTCTCAGCAGCGTGCAGAAAGCCACCTGTTTATTGTATCATCACAGAATATCTTTCGGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGCACCAAACTATTTCTCTACAAAAGCTTTTAACTTTTGCCCTTGACATTGCTCGGGGTATGGAATATATACATTCTCAAGGTGTGATTCATCGAGACCTTAAGCCAGAGAATATCCTCATAGGCGAAGGTTGTCGCCTTAAAATTGCTGATTTTGGCATTGCATGCGAGGAAGCCTCTTGTGACATACTGGCCGATGACCCAGGCACATACCGTTGGATGGCACCCGAGATGATCAAACGTAAATCCTATGGAAGAAAGGTTGATGTGTACAGTTTTGGGCTTATCTTATCGGAGATGTTGACTGGAACTATTCCATACGAGGATATGAATCCAATACAGGCTGCTTTTGCCGTTGTAAACAAGGTATGACTCCTTTGTAATTGAAGTCATCAAGCTTTGTAATCAACATCTCAGTCCTTGCCTAATGTTTGTGTTATGTGGTGTTGTGATTGTTCAGAATTCAAGGCCAGTTATTCCATCAGACTGTCCAGCTGCTATGAGAGCTTTGGTTGAGCAGTGTTGGAGCTTGCAACCAGATAAGAGGCCTGAGTTCTGGCAGATTGTGAAGATATTAGAGCAATTTCAATCTTCACTTGCTCGTGATGGAACCCTTACTCTGCTGCCGAACCCTTGTTGGGATAATAAAAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGCCCTGTGCATCAAAATAGTGGCCCTGTGCCTAAACCCAAGTTCACATGAATCTTTCAAGTGTCCTGGCTTTTATCTACACCAGGTCCGTTGTAATTATAAATCAAAGGTTTGTTTTTGAAGTTCTCTGAATGTAGTCACGTTATGACATTCATGTGATAGTAAATTGATTTTTAGGCTTGCACATAAAGGTGAGTTTTTTTTTCTTTCTTTTTACCTGTGTGCCTACACAACTTATGAAACTCTTGCTTCGTTTGTCAATCTAGAGACTTCATACCAAGAAATCTTC