Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23742 LG5 68231504 68233975 PREDICTED: trichohyalin isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of vernalization response, positive regulation of vernalization response
Cellular Component   located in   nucleus
SNP Position Effect Amino acid change
G/A 68231518 synonymous_variant p.Glu5Glu
A/T 68231711 missense_variant p.Asn70Tyr
T/A 68231837 missense_variant p.Leu112Ile
G/T 68232521 missense_variant p.Asp255Tyr
G/A 68232584 intron_variant
C/A 68232792 missense_variant p.Leu317Ile
A/T 68232799 missense_variant p.Asn319Ile
A/C 68233050 missense_variant p.Ile403Leu
G/C 68233586 missense_variant p.Met581Ile
T/C 68233589 synonymous_variant p.Asp582Asp
G/T 68233590 missense_variant p.Gly583Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23742.1
MESKEQDKNLGPDYSVAENPEVIPPSSVHCMEETDAMLKISVPSCEILTLRKEELHLKYDISSHSKSRENLTNVENCRSQGLEVDVENAGSLLQKETQGGYSELGCNSKANLCDDNDIDSRVRATKSSSDTGQVMVNCLLPKDCIVEDASGGQSSRNNIKQLEREESRDDMKQTLSRTRSMSPSAEIKNTNKRPKIICDFFAKGWCIRGSSCSFLHIKDTVDKTDQEAEADLVTAHQKRKLKVEEGVKDNVQRIRMNEQEQTPSWHPSQEKQNFTLRDNLFPENRFAFSSTSNYFNLNQDGMTTLRNQHIYKGHASTLLNHSPNSSLVTQFPSSSMSLSHRISSQSACSLPFSSSLGAGTQKILSTDKEYLTFKSTFSGSGREDFRLVSSSSVPSYPTGYKSKICSYDWEPSVPFRPSFFITPMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNVLASSQAPIYGDSAVIGKYTSSVNDDKSSVSSHNKLYENEPNKNSVPHEKNTETEITSGTCVNYQNGKIGTGQNTLGVADSTKKEREMTEHDARRHGEGSGHKTKRGDRDKKNHEIDVDFQMDGTMQKEPKALKMLRAALVDHVKELLKPVWHEGRLSKDAHIMIVRKSVDKVVSTIEPHQIATIDTAKQYVSSSRAKIAKLVNGYVNKYGKS*


CDS Sequence:
>Vu_23742.1
ATGGAGTCTAAGGAGCAAGACAAAAACTTGGGGCCAGATTATTCTGTGGCTGAAAACCCTGAAGTAATTCCACCATCTAGTGTGCATTGCATGGAAGAGACTGATGCCATGCTCAAAATATCTGTTCCTTCATGTGAGATACTGACATTGAGAAAGGAAGAGCTTCACCTGAAATATGACATTTCAAGTCATTCGAAATCTAGAGAAAATCTGACTAATGTTGAAAATTGTAGAAGTCAAGGACTAGAAGTTGATGTTGAAAATGCTGGATCCCTTCTACAGAAGGAAACACAGGGTGGATACAGTGAGTTAGGTTGCAATAGCAAGGCTAATTTATGTGATGATAATGATATTGATTCCAGGGTCAGGGCCACCAAGTCATCTAGTGATACTGGACAAGTTATGGTCAATTGCCTGCTTCCAAAAGATTGTATTGTTGAGGATGCTAGTGGTGGTCAGAGTTCTAGGAACAATATCAAGCAGTTAGAGAGGGAGGAGTCAAGGGATGATATGAAGCAAACACTGTCAAGGACTAGAAGTATGTCTCCCAGTGCTGAGATTAAAAACACAAACAAACGACCAAAAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGTGGATAAGACAGATCAGGAGGCTGAAGCTGACTTAGTTACTGCTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTAAGGACAATGTTCAGAGAATAAGGATGAATGAGCAAGAACAAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTACGCTGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTATTTCAACCTAAATCAGGATGGAATGACTACTCTTCGGAACCAACATATATACAAAGGACATGCTTCCACTCTTTTGAACCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCATCTTCAAGTATGTCACTCTCTCACCGGATTTCTTCTCAATCAGCATGCTCATTGCCTTTTAGTTCATCTTTGGGGGCTGGTACCCAAAAGATTTTGAGCACTGATAAAGAATATCTCACATTTAAGTCCACTTTCTCTGGTTCAGGGCGGGAGGATTTTCGTCTAGTTAGTTCTTCCAGCGTTCCATCTTATCCCACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCTTCCTTTTTTATTACTCCCATGAATGTATCATCTCCTGGAGATCTTTATGATCCTCTTCGCGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACGTACTGGCTTCATCACAGGCTCCGATTTATGGTGATTCTGCTGTGATTGGGAAATACACGTCCAGTGTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAACTTTATGAAAATGAGCCAAACAAAAACTCTGTTCCTCATGAAAAGAATACTGAAACAGAGATAACGTCAGGAACTTGTGTAAACTATCAAAATGGTAAAATTGGCACGGGACAAAATACCTTAGGTGTTGCAGATAGTACAAAAAAGGAGAGAGAAATGACTGAGCATGATGCTAGACGACATGGTGAAGGATCAGGGCACAAAACAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATAGATGTTGACTTTCAGATGGATGGCACCATGCAGAAGGAACCAAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCATGTAAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTTAGCAAGGATGCACATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCCCATCAGATTGCTACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGCAAAAATTGCAAAGCTGGTCAATGGATATGTCAACAAATATGGCAAATCTTGA


Promoter Sequence:
>Vu_23742::LG5:68229504-68231504(+)
ATCACGGAGGATGACTGCGATTCTGAAATTTTGTACGTAGAATAGAGACGTAAATTCTTAAAACTTGGAAGAATTACTAAATTTCAGAACATAGGTGGGTGCCACTGGAAATACTGCTGAGTGTGGGTGGGTGGGTGTTGGTGACGCTGTGGGTGTCACAGAGAAGTGTGGTATTAGAATGCTTGACCTGCCAATTGATTTGAACCCATTATTGGAATTGTACCCATAACTAGAATCATGGTTATCAAACTCTCTGAGTTAACTCGTAAACTCAGCTTACGTTCCCAGACATGGCTTCCGAGTTAACTCGGAAGTAAACTCGTTTTCTGCGTAAACTTGATAGATTCAACTATGAAATCAGAAGGATCGTGTAAAATTGCGAGTTTGGAGTGATTCTGCGAGCTTGAAAGTTATATATTTAATGAAGTGCATCAAAATTAATGACAATAATTCAAGTATTTATGTTTTACAATATTTATTTTTATGAATAATATAACTATAAATTTTATTTATTTAAAGTTATATAATTTTGTAGACTTGTTTGAATTAAGATATTATTTATATAATTTTTTTCATCTGTAAGTAAACTCTTACGTGTTTACGAGTCGAGTTTACTCGCCTCTTACGAGTTTACGTAAATTCTTGAATTTGATAACCTTGATTAGAATGCTTGACCTGCCATTCAATAACTGCTCCACAAACTGCCCAATTTGGCCAAACATCAGAGATCTGTTATAGTTATTAGTTACTCTTCTATTGATCTTGCTGAGCTAATGGCTGGTACTTTTTAGCTGTATTGAGTGTGATGTTTCTAAAAAAACCCTCACTCAAGCTTCTCACGAACTAACCCAATGCTTGTTCTTCAGAAATTCCTGGTGTTGTGCTAGCAACATCTCAAACTCTCTTAAACATAATCTTCAAGCCAACAACGTTTTGGTGCAAGGTGCTTATAATGGGTTTGCGACACACCACTTCAGGGAAATCTTTTCAACCACTCAATTTTCAGGTTTTCTATGTCATTAATTTGGACACACCCTTCCTCAAGTTTTTGAACCAGTGCACCACTGCTCCTTCAATACACAAAATCTAGTGACACTTAGAATTCTGGTTTGGTATTTGGGATTTTAATGAATTTCTCAGCCATACCCAATCATCCAATGGGCTAATTCTTGTTAAGAAGTTGACTTTCAGTTTAATTCAACCCCACAAAACCGATTTATAAGTTGATTTTTGCACTCACTTATATATTCTAAATTAGATTTATCTTTAGTCAATGTAAGACTTCCAACACACCTCCCTCATGCTGAGATATATACATATTATGTATGAAACTAGACATTAATGGATGGTCTGATAGTAGGTGAAACAATATGTCCAACAAATAACAAATTCCACTAGGATAGACTCTCAAAATGACTATGATTCCAAGTTAAGAAGTGGACTTTAAACCTAACTCAATCCCACAAAACTGGTTTGTAAGATGAGATTTGCACCCACTTATATACTTTAAATTAGTCTTATCTCTGTCCATAAATTCCCATCAAAATTAGTTCAGTTTCACTAAATAGGAATCCCAAAATAACTAAGGTCTATGCATGAGAAAGAAAGAATGTCAATGCATGGATCATTTTCAAGAGAAATGTGGTAACTACCTGCCGAGTTGGCATTGGGTAGAATCAGAGAGGGGATTCTGTTGTAACGGGTTTATCACCTTTTTAGAGGAGAGCACAGGGTGGACAGGGCTGGGATTTTCAAGAGAAAAATCGGCAGTCTTAAATTGTCCAGAATATTTCTTCATTTCTTTTTCTTTATGCCTCATTCTTGATTTACTTTTTATCGTCGATTCTAAATTTGGGCCAAGTTATGGAGTGTGAATAGTCCTGGGTTTTTTGGGAGTCTGGGCACTCTTGAATCGCGCAGTATATTTTGTTTCCTTTCTTTTCCTCTATGCATTTTTTGATTTAACTTTTTATCTTCCATTCTAGATTTGAGCCTACAAA


Gene Sequence:
>Vu_23742(+)
ATGGAGTCTAAGGAGCAAGACAAAAACTTGGGGCCAGATTATTCTGTGGCTGAAAACCCTGAAGTAATTCCACCATCTAGTGTGCATTGCATGGAAGAGACTGATGCCATGCTCAAAATATCTGTTCCTTCATGTGAGATACTGACATTGAGAAAGGAAGAGCTTCACCTGAAATATGACATTTCAAGTCATTCGAAATCTAGAGAAAATCTGACTAATGTTGAAAATTGTAGAAGTCAAGGACTAGAAGTTGATGTTGAAAATGCTGGATCCCTTCTACAGAAGGAAACACAGGGTGGATACAGTGAGTTAGGTTGCAATAGCAAGGCTAATTTATGTGATGATAATGATATTGATTCCAGGGTCAGGGCCACCAAGTCATCTAGTGATACTGGACAAGTTATGGTCAATTGCCTGCTTCCAAAAGATTGTATTGTTGAGGATGCTAGTGGTGGTCAGAGTTCTAGGAACAATATCAAGCAGTTAGAGAGGGAGGAGTCAAGGGATGATATGAAGCAAACACTGTCAAGGTCTGGTCATTTTAGTTCAGTATGCTCTTTTACATTGTAATATTACCAAACTTCAATTCATTCAGGATGATGTCTCTTCTGAAAGTAGTTTTCTGTCTTTTTCCAGTGTGTTTAAATTGGTCCACATGCTAACCATTAGGTTTTACTGATAACTCCTCCTAATAGCAGGACTAGAAGTATGTCTCCCAGTGCTGAGATTAAAAACACAAACAAACGACCAAAAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGTGGATAAGACAGATCAGGAGGCTGAAGCTGACTTAGTTACTGCTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTATATCATATAACTCGTTTGGTCAAGTTATTCAGGAAATTTGTTCTGTAATCATATTTCTAACGAAGGTATTGTACTGGAACAGGTGTTAAGGACAATGTTCAGAGAATAAGGATGGTTAGCACTCTAGATTCATTTAATACTTAACTTGATAGCATATCTTTGCATTCTTCTGAGTTTCCTTTAAATATGAGCACGCAGAATGAGCAAGAACAAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTACGCTGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTATTTCAACCTAAATCAGGATGGAATGACTACTCTTCGGAACCAACATATATACAAAGGACATGCTTCCACTCTTTTGAACCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCATCTTCAAGTATGTCACTCTCTCACCGGATTTCTTCTCAATCAGCATGCTCATTGCCTTTTAGTTCATCTTTGGGGGCTGGTACCCAAAAGATTTTGAGCACTGATAAAGAATATCTCACATTTAAGTCCACTTTCTCTGGTTCAGGGCGGGAGGATTTTCGTCTAGTTAGTTCTTCCAGCGTTCCATCTTATCCCACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCTTCCTTTTTTATTACTCCCATGAATGTATCATCTCCTGGAGATCTTTATGATCCTCTTCGCGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACGTACTGGCTTCATCACAGGCTCCGATTTATGGTGATTCTGCTGTGATTGGGAAATACACGTCCAGTGTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAACTTTATGAAAATGAGCCAAACAAAAACTCTGTTCCTCATGAAAAGAATACTGAAACAGAGATAACGTCAGGAACTTGTGTAAACTATCAAAATGGTAAAATTGGCACGGGACAAAATACCTTAGGTGTTGCAGATAGTACAAAAAAGGAGAGAGAAATGACTGAGCATGATGCTAGACGACATGGTGAAGGATCAGGGCACAAAACAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATAGATGTTGACTTTCAGATGGATGGCACCATGCAGAAGGAACCAAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCATGTAAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTTAGCAAGGATGCACATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCCCATCAGATTGCTACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGCAAAAATTGCAAAGCTGGTCAATGTAAGCCTCTTTTCTTTTCTTGCAGTTATAGTGATTTTCCAATATGTATGTACATGGATATTATTGTTTCATTGTGATGTTCTTCATTTAATAGAAATATCTTTGATTTGCAGGGATATGTCAACAAATATGGCAAATCTTGA