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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23708 LG5 67919349 67921422 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 67919523 intron_variant
A/T 67919543 intron_variant
C/A 67919555 intron_variant
G/T 67919880 missense_variant p.Lys84Asn
G/A 67920064 missense_variant p.Val146Ile
A/C 67920073 missense_variant p.Ile149Leu
C/A 67920249 missense_variant p.Asn207Lys
C/A 67920384 synonymous_variant p.Ser252Ser
C/A 67920505 missense_variant p.His293Asn
A/C 67920506 missense_variant p.His293Pro
A/G 67920660 intron_variant
C/A 67920751 intron_variant
A/G 67920784 intron_variant
A/T 67921186 splice_region_variant&intron_variant
T/A 67921253 synonymous_variant p.Gly346Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23708.1
MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYTSGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNTKNQNLEAQQNPTSLPQITAPSSSSSSSEKSSPKELIPTKVFSIGFSNVTDVVPNSPTTSVNQTYFQTHNESSMLPPPPAAAAAQTGGFFFPVQHHGQGVPPSTVASQGFCFSELSNVVQLQSPPQHNVGPCTSLLLSEIVGHGGAASKKDLEQDKSLKIMHQPSLFNFCVTPTTTAPTTASAVPPITTSTTTVLSPVIAQVQGMGDPAAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLHSLQHGACYYLVRTLDLLLLQ*


CDS Sequence:
>Vu_23708.1
ATGGCTTCTTCTAACAGACACTGGCCGAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCAACTGGTTGCCACAGAAGCCCTTACACTTCAGGTACGGGTTGTGAAGAGAGAAGTCCGGAGCCAAAGCCAAGGTGGAATCCAAAACCTGAGCAAATTCGGATTCTGGAAGCTATATTCAACTCAGGAATGGTGAATCCTCCTAGGGATGAAATAAGAAAGATAAGGGCACAGTTACAAGAGTATGGCCAAGTGGGTGATGCAAACGTATTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGCCATCTCCAAAACACGAAAAACCAGAACCTTGAAGCTCAACAAAACCCCACATCTCTCCCTCAAATCACTGCACCATCATCCTCGTCTTCCTCATCTGAGAAATCCTCTCCAAAAGAATTAATACCTACCAAGGTATTTTCCATCGGATTCTCTAACGTCACCGATGTGGTACCTAATTCTCCGACTACTTCTGTGAACCAGACCTATTTTCAGACTCACAACGAGTCTTCCATGCTTCCACCCCCACCTGCTGCTGCTGCCGCACAAACTGGGGGTTTCTTCTTCCCAGTGCAACATCATGGGCAGGGAGTACCACCTAGTACGGTGGCATCTCAAGGGTTTTGCTTCTCGGAGCTGTCCAATGTTGTTCAACTTCAGTCACCTCCTCAACACAACGTTGGTCCTTGCACCAGTCTCTTGCTCAGTGAAATCGTAGGCCACGGTGGTGCTGCTTCAAAGAAAGATCTGGAACAAGACAAGAGTCTGAAAATAATGCACCAGCCCTCACTGTTTAATTTCTGTGTCACTCCCACAACAACAGCTCCTACTACTGCCTCAGCTGTACCTCCAATCACTACCTCAACCACCACTGTTCTATCCCCCGTCATTGCTCAAGTTCAAGGCATGGGAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGTCCTTTCAATGTGCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCACGCCACTGGTCAACCTGTGCTAACAAACCAATGGGGTGTCACTCTTCATTCACTCCAGCATGGTGCATGTTATTATTTGGTGCGCACATTAGACCTGCTTCTGTTGCAATAA


Promoter Sequence:
>Vu_23708::LG5:67917349-67919349(+)
TAGACTGTTTAAGATGAGGACGTATATGAGAAGACAGTGATAATTGGATAACAGGAAATGCATTACTGTTGCTAAACTATCAGAAAGCACTGAACCCCTGATATAGTTTTGCGTATTGAAAGCCGTTATTGTAGAATTGTGAATGGTCTTGTCTAGACCGGATGAGTGAAGTAATTTAATTATTTCTTTACAAATGTTTTCATACATTAATTTTATTATCTTTGTTTATAAACCTGTTTTAATATGTCAATTTGTTCTCTCACACTCGTGTAAGTTTAATCGATTTGTTTTTTTTTAATTTATAATATCAAGTCATAGATTTTACTTATTTTTCTAGACATTTTATAAGTTTTAGATCCATTCAGTTTGGATGTGTCTTTCAATTTTGGTTTTATTAATTATATCTTGAACAAGGTTTCTGATATCTTGTTAAAAACGGACCACCTCAAATTCAATCTTAAATGGCTGATTAGTTTTATAAACGAAATGAATTATGTCTGATACATATATCAGAAACGAGTTTATTATAATACCTTCCTTTTCTAATTAAATGGAATTATCTCTTGTTCTTATATTTCAAACTTATTCTTATTTAAAAAAGAGGGGTATGTATAAGATTCTTTCTCCAAAATTTTCAAGTCATTGTTCATTTTTGTTCCTCCTAAATCAAGAACTAGACTTTCTGAAATTTAGTTCCGAAAGTGTTTGTTTTTAAATTAAATTTGAAAGAAAATTCAGAAATAGTTCAATTACAAAGTGATTAATCTTCTGTAGAATAGAATCAATATTTTAGAAACTAAATTTATAAAAGTTAAAAGTCACTTCTGGATATTTATTTTTTTCAGAATTAAATAGGAGCAATGAAGAGTATAAAAAAACTCAAAGAGAAATTCTTAATAGTTTGAATTGATAATTAATGTAGTAATTTGTTGGATGAAGTTGGGTTGGATGTTGTTCTGGGTGTGTAATCGAAGAGTTGGAAAAGAATTCATATAATTGAAAAAAAAATGTAAAAATGACGATAAATATGGTCCCTCGAGTCAATCCAAAGCTCTTGATCCATTGTTTGGCAAGAATAAGCGTAAAAGGTTGCAATTACTAAGCCACCACCGCTTTCCAATCAAAGAGAAGATGGTATAAGGTTCTTGACTTTGAAACAGCGAATTTATTTCCACAACAACCTCTTCCATTAGAATAATCCAACACTTATTTCTTCCCCCAGTCATTATTAATACACTGCTAGCACTCCCAAGTCACCAACACTCTCCTTTCCTTTCCCCCAAAGAAATGTGGTAAAAGAAAGAGACAAAGTGATCAGAAGCCCACCCTTCCCCTTACCCTTCTCTCTCACTCATGAAAGCCCTAGCATTAAGACCCTTTTCCCTGTCATCTCTCAGACAACAAGATTCCTAATTAAGTCCCCAGCATCTATTCCTTTCCATGTTCCATTTGCTTCTCGTCCGGGGGAATTTCCTTGTACTTTAAAGAACCTCCACACTCACTAAACCCTTTTTTTCTTCACACTATTAATGCAAAAGTTCTTTCTATGCAAAAGCTACCTATATAGCAGGGGATGGGATACATGGTACTCGTCATTCCCTTTTATTTATTTCCCTTTCCTTTCTAGTTCATCTTTCTCACACCCGATTCCTCTTTCCCTTTCCTCCTTTTTTATATATTTTCTTTAATACCCTTTTTTCTTTCATTTTATTGTGTTAACTTCCGATATATGTGAATAATTTTGTACCTTTTCTTTGTACTAGATCCCAACCTCTTATATTAACATTATCATAACATCGGTGAGATGCACAGTTACACACAGGCTAGGGTAGGTGAAGACCCTATATAAGAAGCCACGTTGTGTTGGCCCTTTGAGTTCAGTTCAGACCCAAAAGCAACACCAACAAAAACTACTGCTGCCTCTGGATTTTTTTTTCTCTTCTTGTTGGCCGTTTTTCATATCTAATAACTTTCACTTCAGTATTTTTCCACCATCATCA


Gene Sequence:
>Vu_23708(+)
ATGGCTTCTTCTAACAGACACTGGCCGAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCAACTGGTTGCCACAGAAGCCCTTACACTTCAGGTTTGCCACACTTTCAAAACCCTTTCCCATTCTGAACCCAAAGTTCAATCACTTTACCTATCATAATACCCTCTTACGTTACAACATTTACAACCCAGAAATATATGTATCATGCACTTCGCTTTTACTTCCAAGTTGATTTTCATATTCTTTATATACATAAAATATTGGTAGATATCATGATTTACATTGTTATTTAATTTTATGTGTAAATTTCTTAACATTATGTGTTTTATTTTCCCTATTCTTTTTGTTTGTTTCTTTCTTTACCACTACAGGTACGGGTTGTGAAGAGAGAAGTCCGGAGCCAAAGCCAAGGTGGAATCCAAAACCTGAGCAAATTCGGATTCTGGAAGCTATATTCAACTCAGGAATGGTGAATCCTCCTAGGGATGAAATAAGAAAGATAAGGGCACAGTTACAAGAGTATGGCCAAGTGGGTGATGCAAACGTATTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGCCATCTCCAAAACACGAAAAACCAGAACCTTGAAGCTCAACAAAACCCCACATCTCTCCCTCAAATCACTGCACCATCATCCTCGTCTTCCTCATCTGAGAAATCCTCTCCAAAAGAATTAATACCTACCAAGGTATTTTCCATCGGATTCTCTAACGTCACCGATGTGGTACCTAATTCTCCGACTACTTCTGTGAACCAGACCTATTTTCAGACTCACAACGAGTCTTCCATGCTTCCACCCCCACCTGCTGCTGCTGCCGCACAAACTGGGGGTTTCTTCTTCCCAGTGCAACATCATGGGCAGGGAGTACCACCTAGTACGGTGGCATCTCAAGGGTTTTGCTTCTCGGAGCTGTCCAATGTTGTTCAACTTCAGTCACCTCCTCAACACAACGTTGGTCCTTGCACCAGTCTCTTGCTCAGTGAAATCGTAGGCCACGGTGGTGCTGCTTCAAAGAAAGATCTGGAACAAGACAAGAGTCTGAAAATAATGCACCAGCCCTCACTGTTTAATTTCTGTGTCACTCCCACAACAACAGCTCCTACTACTGCCTCAGCTGTACCTCCAATCACTACCTCAACCACCACTGTTCTATCCCCCGTCATTGCTCAAGTTCAAGGTAATTTTATTTAGAATTTTTCATTCTCTTTGGATATATTTCTTTTAATACAGTATGAAAAAATTATTTTTATGTTTTCAAAAATTAGTTTAAAACACGAAAAATTAATGAAAAAAAAAGGTATCAGAAAGAGAACATAACATTACTACAAGTTAGTTCATTATTAAATTTGGTTTGCATTACGATTTGCAGAAATGACTTGAACAATTCATTTTTCCCCATGCCCTGAACCACTGGGTAACAAATATACAGTGTGACATTCTTAATGGAGCTTGGTTGCTTGTTACTTTCAATATATATAAAAGAATAGTTATGGATGACAGGATGAGTAGTGTGTACCACAGGAGTAAGAAGAGTATCTTTTGTAAAATGTTTTATATAAAAGGAGAAAAAAAGAGGAAAATACAGAATAAATGGATTGATAAGATAAAAAAATATATGTAAGTTTTAAAATGATTAGGTTGAAGATGATGGGTAGCATGGATTTTGGGTCACGTGTGCATGGCTTTAATTGGCCTTAGCCTATAGTTGACTTGTGGTAGCTTGTGTTTCGACTTGCACATGAGAGATATCTGTGTGTATCACAGGCATGGGAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGTCCTTTCAATGTGCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCACGCCACTGGTCAACCTGTGCTAACAAACCAATGGGGTGTCACTCTTCATTCACTCCAGCATGGTGCATGTTATTATTTGGTGCGCACATTAGACCTGCTTCTGTTGCAATAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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